Wall clock time and date at job start Tue Mar 31 2020 11:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 N 1.46502 * 109.46547 * 179.97438 * 16 14 13 18 18 C 1.34783 * 119.99598 * 179.97438 * 17 16 14 19 19 O 1.21540 * 120.00217 * 0.02562 * 18 17 16 20 20 C 1.47914 * 119.99582 * 180.02562 * 18 17 16 21 21 C 1.39625 * 119.99775 * 359.72697 * 20 18 17 22 22 C 1.37727 * 120.00493 * 179.76501 * 21 20 18 23 23 C 1.39675 * 119.99165 * 0.53357 * 22 21 20 24 24 C 1.43203 * 120.00251 * 179.70387 * 23 22 21 25 25 N 9.80966 * 109.64719 * 176.79241 * 14 1 2 26 26 C 1.39673 * 119.99159 * 359.71845 * 23 22 21 27 27 C 1.37730 * 119.99351 * 0.02562 * 26 23 22 28 28 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 29 29 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 30 30 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 32 32 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 33 33 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 34 34 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 35 35 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 36 36 H 1.09002 * 109.47036 * 60.00566 * 16 14 13 37 37 H 0.96994 * 120.00819 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.99394 * 0.02562 * 21 20 18 39 39 H 1.07998 * 120.00147 * 180.25547 * 22 21 20 40 40 H 1.07998 * 120.00260 * 179.97438 * 26 23 22 41 41 H 1.07999 * 119.99864 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 7 -1.3052 3.8650 2.5548 18 6 -1.8683 4.5103 3.5955 19 8 -1.2483 4.6500 4.6315 20 6 -3.2409 5.0485 3.4767 21 6 -3.9510 4.8930 2.2846 22 6 -5.2309 5.3899 2.1755 23 6 -5.8144 6.0591 3.2537 24 6 -7.1428 6.5813 3.1383 25 7 -8.1965 6.9957 3.0467 26 6 -5.1019 6.2191 4.4444 27 6 -3.8240 5.7175 4.5548 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9924 1.1425 -0.6140 34 1 2.2853 2.1184 1.9978 35 1 0.0905 2.6048 3.4843 36 1 0.7469 4.1463 2.8829 37 1 -1.8002 3.7532 1.7282 38 1 -3.4981 4.3794 1.4495 39 1 -5.7816 5.2659 1.2548 40 1 -5.5527 6.7369 5.2780 41 1 -3.2728 5.8416 5.4752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132325067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:26 Heat of formation + Delta-G solvation = -44.307813 kcal Electronic energy + Delta-G solvation = -24654.740260 eV Core-core repulsion = 20919.670344 eV Total energy + Delta-G solvation = -3735.069916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54770 -40.73066 -39.59376 -37.50082 -37.22992 -35.57573 -34.47596 -33.32850 -32.70490 -32.14392 -29.74288 -28.37701 -25.71238 -24.21955 -23.68580 -22.47160 -21.82221 -21.27611 -20.07195 -19.98731 -19.16071 -17.70674 -17.26186 -17.16127 -16.83574 -16.14985 -15.95132 -15.85264 -15.56999 -15.25369 -15.12627 -14.68556 -14.63862 -14.56859 -14.36377 -14.28216 -14.06917 -13.92654 -13.78470 -13.40092 -13.22504 -13.13749 -12.70298 -12.45497 -12.25119 -12.13502 -11.69051 -11.47643 -11.23024 -10.98816 -10.81522 -10.64397 -10.37051 -10.10054 -10.02092 -9.82187 -8.76453 -6.45344 -0.69178 0.29868 1.37631 1.43971 1.53226 1.53990 1.65470 1.69491 1.80509 2.14978 2.42517 2.57082 2.72027 2.85987 3.05141 3.57542 3.74847 3.83941 3.86607 4.18031 4.32492 4.34278 4.34409 4.38865 4.42422 4.55485 4.61566 4.88105 4.95687 5.03689 5.12688 5.14757 5.17448 5.21650 5.26890 5.31791 5.56951 5.61026 5.65145 5.67519 6.01563 6.35550 6.39831 6.52549 6.76528 7.05562 7.27302 7.37227 8.63024 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.002413 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.342665 B =11599.285545 C =12264.085851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C 0.248 3.752 4 H 0.032 0.968 5 C -0.605 4.605 6 H 0.040 0.960 7 C -0.013 4.013 8 N -0.937 5.937 9 Si 1.081 2.919 10 H -0.259 1.259 11 H -0.259 1.259 12 H -0.291 1.291 13 N -0.697 5.697 14 C 0.502 3.498 15 O -0.569 6.569 16 C 0.107 3.893 17 N -0.704 5.704 18 C 0.558 3.442 19 O -0.567 6.567 20 C -0.113 4.113 21 C -0.082 4.082 22 C -0.067 4.067 23 C -0.008 4.008 24 C 0.278 3.722 25 N -0.456 5.456 26 C -0.067 4.067 27 C -0.064 4.064 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.257 0.743 34 H 0.406 0.594 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.417 0.583 38 H 0.152 0.848 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.171 7.239 10.255 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.143 3.857 4 H 0.050 0.950 5 C -0.643 4.643 6 H 0.058 0.942 7 C -0.213 4.213 8 N -0.573 5.573 9 Si 0.904 3.096 10 H -0.185 1.185 11 H -0.183 1.183 12 H -0.218 1.218 13 N -0.346 5.346 14 C 0.288 3.712 15 O -0.449 6.449 16 C -0.021 4.021 17 N -0.359 5.359 18 C 0.346 3.654 19 O -0.447 6.447 20 C -0.117 4.117 21 C -0.101 4.101 22 C -0.088 4.088 23 C -0.012 4.012 24 C -0.037 4.037 25 N -0.132 5.132 26 C -0.087 4.087 27 C -0.083 4.083 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.240 0.760 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.257 0.743 38 H 0.170 0.830 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.809 7.296 8.643 24.567 hybrid contribution 1.325 0.424 1.557 2.088 sum -20.484 7.720 10.200 24.150 Atomic orbital electron populations 1.21781 0.94928 1.00635 1.01818 1.22172 0.95935 0.98230 1.01220 1.18935 0.93338 0.89861 0.83585 0.95038 1.22381 0.91774 1.46454 1.03699 0.94157 1.26884 0.97688 0.93718 1.02961 1.70935 1.05505 1.44793 1.36040 0.83542 0.74519 0.78484 0.73063 1.18466 1.18336 1.21801 1.46007 1.15429 1.55756 1.17416 1.20734 0.82094 0.78653 0.89735 1.90641 1.51438 1.60921 1.41918 1.21077 0.85343 1.00355 0.95296 1.45622 1.15825 1.56825 1.17662 1.18559 0.86677 0.77515 0.82660 1.90782 1.64732 1.59416 1.29819 1.20084 0.93227 1.01757 0.96631 1.21454 0.94068 0.97861 0.96705 1.21336 0.94501 0.94542 0.98375 1.16223 0.86535 1.01632 0.96802 1.25806 0.92637 0.92630 0.92600 1.81323 1.12897 1.10216 1.08724 1.21335 0.93161 0.97566 0.96619 1.21280 0.94415 0.94092 0.98492 0.92741 0.93682 0.92525 0.93192 0.92272 0.93378 0.75964 0.86924 0.87483 0.74270 0.83011 0.82127 0.82011 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.52 71.98 0.61 -3.87 16 2 C -0.14 -5.37 5.20 30.59 0.16 -5.21 16 3 C 0.25 10.63 1.81 44.24 0.08 10.71 16 4 H 0.03 1.50 6.07 -2.39 -0.01 1.48 16 5 C -0.60 -31.18 9.09 25.60 0.23 -30.95 16 6 H 0.04 2.21 7.95 -2.91 -0.02 2.19 16 7 C -0.01 -0.71 5.42 84.65 0.46 -0.25 16 8 N -0.94 -55.59 13.70 21.45 0.29 -55.29 16 9 Si 1.08 48.54 25.39 68.60 1.74 50.28 16 10 H -0.26 -10.72 6.73 99.48 0.67 -10.05 16 11 H -0.26 -10.90 6.38 99.48 0.63 -10.27 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 13 N -0.70 -23.81 5.03 -446.10 -2.24 -26.05 16 14 C 0.50 14.94 6.49 87.66 0.57 15.51 16 15 O -0.57 -19.36 12.81 -3.02 -0.04 -19.40 16 16 C 0.11 2.37 6.15 85.63 0.53 2.90 16 17 N -0.70 -14.25 5.48 -469.62 -2.57 -16.82 16 18 C 0.56 11.50 7.77 86.81 0.67 12.17 16 19 O -0.57 -15.21 16.33 -3.84 -0.06 -15.27 16 20 C -0.11 -1.66 5.88 -20.04 -0.12 -1.77 16 21 C -0.08 -0.87 9.52 22.48 0.21 -0.66 16 22 C -0.07 -0.58 9.73 22.50 0.22 -0.36 16 23 C -0.01 -0.08 5.73 -21.34 -0.12 -0.20 16 24 C 0.28 3.94 15.32 88.33 1.35 5.30 16 25 N -0.46 -9.10 18.54 19.01 0.35 -8.75 16 26 C -0.07 -0.57 9.73 22.50 0.22 -0.35 16 27 C -0.06 -0.77 9.58 22.49 0.22 -0.55 16 28 H 0.05 1.74 5.64 -2.39 -0.01 1.73 16 29 H 0.04 1.57 7.87 -2.38 -0.02 1.56 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 2.06 4.43 -2.39 -0.01 2.05 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.26 15.31 8.72 -92.71 -0.81 14.50 16 34 H 0.41 12.34 8.53 -92.71 -0.79 11.55 16 35 H 0.11 2.23 8.14 -2.39 -0.02 2.22 16 36 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.42 7.74 5.46 -92.71 -0.51 7.23 16 38 H 0.15 1.29 6.39 -2.91 -0.02 1.28 16 39 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 40 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 41 H 0.15 1.78 7.64 -2.91 -0.02 1.76 16 Total: -1.00 -69.13 350.81 2.43 -66.71 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.34 Total: 22.19 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 5.30 Total: 2.41 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -4.17 Total: -106.92 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.10 Total: -34.66 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 1.74 Total: 50.28 kcal Total: -69.13 2.43 -66.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132325067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.398 kcal (2) G-P(sol) polarization free energy of solvation -69.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds