Wall clock time and date at job start Tue Mar 31 2020 10:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47470 * 120.00287 * 2 1 3 5 5 C 1.38284 * 119.93360 * 119.99662 * 4 2 1 6 6 C 1.38110 * 120.07119 * 180.02562 * 5 4 2 7 7 C 1.38870 * 119.93000 * 359.97438 * 6 5 4 8 8 N 1.40075 * 120.06968 * 179.97438 * 7 6 5 9 9 C 1.36137 * 124.92988 * 179.97438 * 8 7 6 10 10 C 1.35740 * 107.07304 * 180.02562 * 9 8 7 11 11 O 1.36074 * 127.25838 * 180.02562 * 10 9 8 12 12 C 1.41872 * 105.47720 * 359.97438 * 10 9 8 13 13 C 1.47378 * 126.44928 * 180.02562 * 12 10 9 14 14 O 1.21632 * 120.00168 * 359.97438 * 13 12 10 15 15 N 1.34776 * 119.99878 * 180.02562 * 13 12 10 16 16 C 1.36908 * 120.00123 * 179.97438 * 15 13 12 17 17 H 1.08011 * 119.99582 * 359.97438 * 16 15 13 18 18 C 1.39015 * 120.00440 * 179.97438 * 16 15 13 19 19 N 1.31384 * 119.99735 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00194 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47153 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47384 * 119.99774 * 20 18 16 23 23 H 1.48497 * 109.46858 * 239.99756 * 20 18 16 24 24 N 1.28452 * 124.92814 * 359.69350 * 8 7 6 25 25 C 1.38868 * 119.85990 * 0.27242 * 7 6 5 26 26 C 1.38114 * 119.93230 * 359.48598 * 25 7 6 27 27 H 1.09001 * 109.46865 * 60.00164 * 1 2 3 28 28 H 1.09003 * 109.46770 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46876 * 299.99619 * 1 2 3 30 30 H 1.09001 * 109.46971 * 240.00216 * 2 1 3 31 31 H 1.09001 * 109.47459 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47405 * 300.00149 * 3 2 1 33 33 H 1.09001 * 109.47051 * 60.00265 * 3 2 1 34 34 H 1.07998 * 119.96130 * 0.02562 * 5 4 2 35 35 H 1.08004 * 120.03482 * 180.02562 * 6 5 4 36 36 H 1.08005 * 126.45971 * 359.96714 * 9 8 7 37 37 H 0.96701 * 114.00240 * 90.02657 * 11 10 9 38 38 H 0.97000 * 120.00123 * 359.97438 * 15 13 12 39 39 H 0.97004 * 119.99798 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.03300 * 179.72741 * 25 7 6 41 41 H 1.07994 * 119.96758 * 180.21347 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8273 -1.8346 1.1018 6 6 3.2889 -2.4883 2.2275 7 6 2.9544 -2.0151 3.4895 8 7 3.4205 -2.6760 4.6332 9 6 3.1546 -2.2992 5.9140 10 6 3.7808 -3.1862 6.7286 11 8 3.7857 -3.1938 8.0893 12 6 4.4281 -4.1043 5.8621 13 6 5.2449 -5.2626 6.2659 14 8 5.4161 -5.5044 7.4456 15 7 5.8031 -6.0534 5.3281 16 6 6.5623 -7.1291 5.7032 17 1 6.7143 -7.3438 6.7508 18 6 7.1376 -7.9451 4.7359 19 7 6.9523 -7.6843 3.4616 20 14 8.1741 -9.4125 5.2478 21 1 8.2288 -9.4869 6.7300 22 1 7.5685 -10.6576 4.7112 23 1 9.5494 -9.2589 4.7093 24 7 4.1566 -3.7287 4.6256 25 6 2.1517 -0.8889 3.6153 26 6 1.6974 -0.2367 2.4857 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.0874 -2.2019 0.1200 35 1 3.9100 -3.3660 2.1264 36 1 2.5586 -1.4533 6.2236 37 1 3.0659 -3.7060 8.4824 38 1 5.6669 -5.8604 4.3873 39 1 7.3534 -8.2539 2.7866 40 1 1.8862 -0.5210 4.5954 41 1 1.0760 0.6412 2.5829 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162967737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:51 Heat of formation + Delta-G solvation = 21.994558 kcal Electronic energy + Delta-G solvation = -25008.577873 eV Core-core repulsion = 21276.383043 eV Total energy + Delta-G solvation = -3732.194829 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.54014 -39.73944 -37.87350 -36.88016 -35.76331 -33.94039 -32.47866 -31.39514 -31.20549 -29.67668 -28.51884 -27.46932 -25.56395 -23.97199 -23.23828 -22.07980 -20.93734 -20.20226 -19.28652 -18.53852 -17.80887 -17.09099 -16.28043 -16.07834 -15.87658 -15.23931 -14.75924 -14.56132 -14.23075 -14.03751 -14.01990 -13.79328 -13.64956 -13.45290 -13.25766 -13.14416 -12.68875 -12.64858 -12.30287 -11.69532 -11.60782 -11.48655 -11.28966 -11.13731 -11.11919 -10.90481 -10.35308 -10.29933 -9.93823 -9.78253 -9.50420 -9.21842 -8.81655 -8.57543 -8.03553 -7.92221 -6.49148 -3.83574 0.70160 1.13661 2.24021 2.34859 2.53181 3.19617 3.25343 3.33242 3.57019 4.10987 4.29210 4.35153 4.37364 4.45551 4.62272 4.73943 4.86386 4.92230 5.04226 5.05726 5.09677 5.18036 5.28707 5.34284 5.39539 5.48588 5.49123 5.58029 5.65427 5.79770 5.81116 5.88150 5.90660 6.06047 6.16084 6.20651 6.38958 6.55710 6.69426 7.13183 7.48730 7.99152 8.01117 8.19907 8.59394 9.11031 9.50833 10.04330 10.67459 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.003049 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.385487 B = 9182.010392 C =10769.088631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.087 4.087 5 C -0.094 4.094 6 C -0.107 4.107 7 C 0.148 3.852 8 N -0.241 5.241 9 C -0.053 4.053 10 C 0.046 3.954 11 O -0.452 6.452 12 C 0.020 3.980 13 C 0.504 3.496 14 O -0.582 6.582 15 N -0.531 5.531 16 C -0.295 4.295 17 H 0.109 0.891 18 C 0.024 3.976 19 N -0.885 5.885 20 Si 0.934 3.066 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.280 1.280 24 N -0.265 5.265 25 C -0.132 4.132 26 C -0.093 4.093 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.132 0.868 35 H 0.145 0.855 36 H 0.183 0.817 37 H 0.385 0.615 38 H 0.400 0.600 39 H 0.274 0.726 40 H 0.131 0.869 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.967 16.943 -8.291 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.088 4.088 5 C -0.112 4.112 6 C -0.127 4.127 7 C 0.057 3.943 8 N -0.023 5.023 9 C -0.192 4.192 10 C -0.010 4.010 11 O -0.257 6.257 12 C -0.143 4.143 13 C 0.289 3.711 14 O -0.466 6.466 15 N -0.166 5.166 16 C -0.426 4.426 17 H 0.127 0.873 18 C -0.180 4.180 19 N -0.525 5.525 20 Si 0.761 3.239 21 H -0.189 1.189 22 H -0.206 1.206 23 H -0.206 1.206 24 N -0.098 5.098 25 C -0.152 4.152 26 C -0.111 4.111 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.163 0.837 36 H 0.200 0.800 37 H 0.239 0.761 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.096 16.775 -8.842 23.046 hybrid contribution -0.121 -0.648 0.562 0.866 sum -13.217 16.127 -8.280 22.435 Atomic orbital electron populations 1.21870 0.94249 1.02181 1.01914 1.20122 0.95980 0.96053 0.95283 1.21871 1.01435 0.95011 1.01915 1.19945 0.98070 0.95930 0.94818 1.20989 0.97017 0.94816 0.98411 1.21061 1.00556 1.01226 0.89873 1.17638 0.98450 0.93823 0.84400 1.42207 1.36342 1.19560 1.04215 1.22741 1.07492 1.04998 0.84003 1.18142 1.01808 0.96228 0.84800 1.84868 1.54270 1.73919 1.12640 1.23246 1.02945 0.99646 0.88452 1.16335 0.85262 0.83304 0.86225 1.90648 1.65631 1.73486 1.16831 1.41839 1.42260 1.23797 1.08694 1.19901 1.24883 1.02567 0.95218 0.87305 1.25402 0.98198 0.99632 0.94732 1.69648 1.43810 1.39251 0.99823 0.85726 0.78961 0.80032 0.79221 1.18929 1.20559 1.20551 1.73789 1.11185 1.01566 1.23237 1.20797 0.99323 0.95020 1.00078 1.20722 0.99797 0.99642 0.90967 0.92360 0.92385 0.92435 0.90231 0.92377 0.92360 0.92431 0.84994 0.83675 0.80039 0.76111 0.76534 0.91573 0.85069 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.01 37.16 0.33 -0.54 16 2 C -0.06 -0.38 3.09 -91.78 -0.28 -0.67 16 3 C -0.15 -0.88 9.01 37.16 0.33 -0.55 16 4 C -0.09 -0.78 4.79 -104.59 -0.50 -1.29 16 5 C -0.09 -0.98 9.66 -39.61 -0.38 -1.37 16 6 C -0.11 -1.44 9.59 -39.39 -0.38 -1.82 16 7 C 0.15 2.07 6.66 -83.62 -0.56 1.51 16 8 N -0.24 -4.07 3.52 -10.40 -0.04 -4.11 16 9 C -0.05 -0.82 10.81 -16.54 -0.18 -1.00 16 10 C 0.05 0.88 7.35 -39.09 -0.29 0.59 16 11 O -0.45 -8.15 13.20 -22.23 -0.29 -8.44 16 12 C 0.02 0.46 7.13 -82.67 -0.59 -0.13 16 13 C 0.50 13.48 7.76 -12.54 -0.10 13.38 16 14 O -0.58 -16.98 16.10 2.99 0.05 -16.94 16 15 N -0.53 -14.65 5.28 -11.97 -0.06 -14.72 16 16 C -0.30 -8.46 9.68 -15.00 -0.15 -8.61 16 17 H 0.11 3.22 7.15 -52.48 -0.38 2.84 16 18 C 0.02 0.65 5.50 -17.46 -0.10 0.56 16 19 N -0.89 -24.41 13.05 55.50 0.72 -23.69 16 20 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 24 N -0.27 -5.46 10.84 33.46 0.36 -5.10 16 25 C -0.13 -1.39 9.43 -39.39 -0.37 -1.76 16 26 C -0.09 -0.82 8.70 -39.61 -0.34 -1.16 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.33 7.38 -51.93 -0.38 -0.06 16 30 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.33 7.38 -51.93 -0.38 -0.05 16 34 H 0.13 1.13 7.94 -52.49 -0.42 0.71 16 35 H 0.15 2.17 7.64 -52.48 -0.40 1.76 16 36 H 0.18 1.97 6.96 -52.48 -0.37 1.60 16 37 H 0.38 5.12 9.07 45.56 0.41 5.53 16 38 H 0.40 10.85 7.61 -40.82 -0.31 10.54 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.13 1.11 6.65 -52.48 -0.35 0.76 16 41 H 0.13 0.83 7.09 -52.49 -0.37 0.46 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -34.34 354.65 -6.66 -40.99 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -4.18 Total: 13.51 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -3.54 Total: -2.85 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.99 Total: -47.61 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.25 Total: -25.38 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.34 -6.66 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162967737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.989 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds