Wall clock time and date at job start Tue Mar 31 2020 10:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 C 1.50696 * 109.47470 * 120.00287 * 2 1 3 5 5 C 1.38284 * 119.93360 * 119.99662 * 4 2 1 6 6 C 1.38110 * 120.07119 * 180.02562 * 5 4 2 7 7 C 1.38870 * 119.93000 * 359.97438 * 6 5 4 8 8 N 1.40075 * 120.06968 * 179.97438 * 7 6 5 9 9 C 1.36137 * 124.92988 * 179.97438 * 8 7 6 10 10 C 1.35740 * 107.07304 * 180.02562 * 9 8 7 11 11 O 1.36074 * 127.25838 * 180.02562 * 10 9 8 12 12 C 1.41872 * 105.47720 * 359.97438 * 10 9 8 13 13 C 1.47378 * 126.44928 * 180.02562 * 12 10 9 14 14 O 1.21632 * 120.00168 * 359.97438 * 13 12 10 15 15 N 1.34776 * 119.99878 * 180.02562 * 13 12 10 16 16 C 1.36908 * 120.00123 * 179.97438 * 15 13 12 17 17 H 1.08011 * 119.99582 * 359.97438 * 16 15 13 18 18 C 1.39015 * 120.00440 * 179.97438 * 16 15 13 19 19 N 1.31384 * 119.99735 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00194 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47153 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47384 * 119.99774 * 20 18 16 23 23 H 1.48497 * 109.46858 * 239.99756 * 20 18 16 24 24 N 1.28452 * 124.92814 * 359.69350 * 8 7 6 25 25 C 1.38868 * 119.85990 * 0.27242 * 7 6 5 26 26 C 1.38114 * 119.93230 * 359.48598 * 25 7 6 27 27 H 1.09001 * 109.46865 * 60.00164 * 1 2 3 28 28 H 1.09003 * 109.46770 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46876 * 299.99619 * 1 2 3 30 30 H 1.09001 * 109.46971 * 240.00216 * 2 1 3 31 31 H 1.09001 * 109.47459 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47405 * 300.00149 * 3 2 1 33 33 H 1.09001 * 109.47051 * 60.00265 * 3 2 1 34 34 H 1.07998 * 119.96130 * 0.02562 * 5 4 2 35 35 H 1.08004 * 120.03482 * 180.02562 * 6 5 4 36 36 H 1.08005 * 126.45971 * 359.96714 * 9 8 7 37 37 H 0.96701 * 114.00240 * 90.02657 * 11 10 9 38 38 H 0.97000 * 120.00123 * 359.97438 * 15 13 12 39 39 H 0.97004 * 119.99798 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.03300 * 179.72741 * 25 7 6 41 41 H 1.07994 * 119.96758 * 180.21347 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8273 -1.8346 1.1018 6 6 3.2889 -2.4883 2.2275 7 6 2.9544 -2.0151 3.4895 8 7 3.4205 -2.6760 4.6332 9 6 3.1546 -2.2992 5.9140 10 6 3.7808 -3.1862 6.7286 11 8 3.7857 -3.1938 8.0893 12 6 4.4281 -4.1043 5.8621 13 6 5.2449 -5.2626 6.2659 14 8 5.4161 -5.5044 7.4456 15 7 5.8031 -6.0534 5.3281 16 6 6.5623 -7.1291 5.7032 17 1 6.7143 -7.3438 6.7508 18 6 7.1376 -7.9451 4.7359 19 7 6.9523 -7.6843 3.4616 20 14 8.1741 -9.4125 5.2478 21 1 8.2288 -9.4869 6.7300 22 1 7.5685 -10.6576 4.7112 23 1 9.5494 -9.2589 4.7093 24 7 4.1566 -3.7287 4.6256 25 6 2.1517 -0.8889 3.6153 26 6 1.6974 -0.2367 2.4857 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.0874 -2.2019 0.1200 35 1 3.9100 -3.3660 2.1264 36 1 2.5586 -1.4533 6.2236 37 1 3.0659 -3.7060 8.4824 38 1 5.6669 -5.8604 4.3873 39 1 7.3534 -8.2539 2.7866 40 1 1.8862 -0.5210 4.5954 41 1 1.0760 0.6412 2.5829 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162967737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:50 Heat of formation + Delta-G solvation = -2.421165 kcal Electronic energy + Delta-G solvation = -25009.636618 eV Core-core repulsion = 21276.383043 eV Total energy + Delta-G solvation = -3733.253575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.94377 -40.64711 -39.85791 -38.25679 -36.55866 -36.06789 -33.79324 -33.15219 -32.31600 -30.99380 -29.66457 -27.90753 -27.43072 -25.35786 -24.21958 -23.34933 -22.11996 -21.23299 -20.79382 -20.23550 -19.50817 -18.41213 -17.95956 -17.24914 -16.94646 -16.69611 -16.08921 -15.85638 -15.67790 -15.34701 -15.24031 -15.08770 -14.74355 -14.69004 -14.41589 -14.30508 -13.75733 -13.60161 -13.37811 -12.98525 -12.89209 -12.83241 -12.49481 -12.27594 -12.11394 -12.02055 -11.76057 -11.63288 -11.52031 -11.42279 -10.93470 -10.69080 -10.15167 -10.14254 -10.05856 -9.12112 -8.56827 -6.04039 -0.33963 0.29668 0.69458 1.09567 1.29096 1.39701 1.42257 1.56325 2.24816 2.37441 2.69063 2.84550 3.20691 3.27231 3.57011 3.69299 3.74592 3.86149 3.92929 4.14293 4.25648 4.32595 4.36880 4.44404 4.51087 4.57055 4.73978 4.89031 4.95560 4.96829 5.06118 5.06805 5.13935 5.23582 5.32469 5.33581 5.37313 5.46497 5.65677 5.67768 5.87189 6.00432 6.42717 6.73608 6.80184 6.98123 7.39969 7.93526 8.60863 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.003049 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.385487 B = 9182.010392 C =10769.088631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.072 4.072 5 C -0.101 4.101 6 C -0.126 4.126 7 C 0.104 3.896 8 N -0.227 5.227 9 C -0.019 4.019 10 C 0.026 3.974 11 O -0.463 6.463 12 C -0.030 4.030 13 C 0.503 3.497 14 O -0.617 6.617 15 N -0.544 5.544 16 C -0.339 4.339 17 H 0.089 0.911 18 C -0.012 4.012 19 N -0.911 5.911 20 Si 1.006 2.994 21 H -0.268 1.268 22 H -0.265 1.265 23 H -0.267 1.267 24 N -0.280 5.280 25 C -0.116 4.116 26 C -0.087 4.087 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.145 0.855 35 H 0.116 0.884 36 H 0.239 0.761 37 H 0.402 0.598 38 H 0.398 0.602 39 H 0.283 0.717 40 H 0.162 0.838 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.085 19.784 -9.483 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.073 4.073 5 C -0.119 4.119 6 C -0.146 4.146 7 C 0.014 3.986 8 N -0.010 5.010 9 C -0.160 4.160 10 C -0.030 4.030 11 O -0.270 6.270 12 C -0.190 4.190 13 C 0.290 3.710 14 O -0.503 6.503 15 N -0.178 5.178 16 C -0.468 4.468 17 H 0.107 0.893 18 C -0.213 4.213 19 N -0.551 5.551 20 Si 0.827 3.173 21 H -0.192 1.192 22 H -0.190 1.190 23 H -0.192 1.192 24 N -0.115 5.115 25 C -0.136 4.136 26 C -0.105 4.105 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.163 0.837 35 H 0.134 0.866 36 H 0.256 0.744 37 H 0.258 0.742 38 H 0.232 0.768 39 H 0.092 0.908 40 H 0.179 0.821 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.227 19.614 -10.069 26.795 hybrid contribution 0.340 -1.271 0.726 1.503 sum -14.887 18.343 -9.343 25.405 Atomic orbital electron populations 1.21870 0.93185 1.01999 1.03055 1.20198 0.96726 0.96395 0.94128 1.21872 1.00871 0.94345 1.03056 1.20328 0.96006 0.94634 0.96309 1.21171 0.97308 0.95373 0.98054 1.21022 1.01224 1.01094 0.91253 1.18068 1.01346 0.95865 0.83319 1.42581 1.34356 1.18114 1.05952 1.23395 1.05656 1.04658 0.82286 1.18294 1.02787 0.96639 0.85257 1.84812 1.55690 1.74215 1.12312 1.22757 1.05484 1.00252 0.90516 1.16931 0.84599 0.83819 0.85658 1.90580 1.66843 1.74775 1.18097 1.41873 1.43037 1.24248 1.08624 1.19923 1.27540 1.04512 0.94871 0.89292 1.26332 0.98582 1.01921 0.94473 1.69720 1.44315 1.40380 1.00681 0.84702 0.77511 0.76431 0.78614 1.19228 1.19034 1.19194 1.73682 1.12058 1.03200 1.22580 1.21168 0.97176 0.93011 1.02207 1.21161 0.99182 1.00146 0.90023 0.91127 0.93235 0.91507 0.89997 0.93299 0.91112 0.91519 0.83707 0.86635 0.74436 0.74158 0.76797 0.90771 0.82065 0.81613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.01 71.98 0.65 -0.52 16 2 C -0.06 -0.57 3.09 -11.54 -0.04 -0.60 16 3 C -0.14 -1.20 9.01 71.98 0.65 -0.55 16 4 C -0.07 -1.07 4.79 -19.84 -0.09 -1.17 16 5 C -0.10 -2.00 9.66 22.25 0.21 -1.78 16 6 C -0.13 -3.42 9.59 22.39 0.21 -3.21 16 7 C 0.10 2.74 6.66 38.13 0.25 3.00 16 8 N -0.23 -7.53 3.52 -186.82 -0.66 -8.19 16 9 C -0.02 -0.55 10.81 83.45 0.90 0.35 16 10 C 0.03 0.99 7.35 22.59 0.17 1.16 16 11 O -0.46 -16.70 13.20 -92.24 -1.22 -17.92 16 12 C -0.03 -1.41 7.13 42.42 0.30 -1.11 16 13 C 0.50 28.76 7.76 86.65 0.67 29.44 16 14 O -0.62 -38.28 16.10 -1.98 -0.03 -38.31 16 15 N -0.54 -32.12 5.28 -310.02 -1.64 -33.75 16 16 C -0.34 -20.62 9.68 84.09 0.81 -19.81 16 17 H 0.09 5.63 7.15 -2.90 -0.02 5.61 16 18 C -0.01 -0.67 5.50 84.95 0.47 -0.20 16 19 N -0.91 -51.82 13.05 21.68 0.28 -51.54 16 20 Si 1.01 44.04 29.55 68.60 2.03 46.07 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 N -0.28 -12.03 10.84 -48.06 -0.52 -12.55 16 25 C -0.12 -1.97 9.43 22.39 0.21 -1.76 16 26 C -0.09 -1.13 8.70 22.25 0.19 -0.94 16 27 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.43 7.38 -2.39 -0.02 0.42 16 30 H 0.08 0.82 7.87 -2.39 -0.02 0.80 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.45 7.38 -2.39 -0.02 0.43 16 34 H 0.15 2.37 7.94 -2.91 -0.02 2.35 16 35 H 0.12 3.76 7.64 -2.91 -0.02 3.74 16 36 H 0.24 3.86 6.96 -2.91 -0.02 3.84 16 37 H 0.40 10.71 9.07 -74.06 -0.67 10.04 16 38 H 0.40 23.23 7.61 -92.71 -0.71 22.53 16 39 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.16 1.75 6.65 -2.91 -0.02 1.73 16 41 H 0.17 1.06 7.09 -2.91 -0.02 1.04 16 Total: -1.00 -80.85 354.65 3.54 -77.31 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: -0.28 Total: 36.60 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.58 Total: 2.28 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -2.53 Total: -106.03 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -1.25 Total: -56.22 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -80.85 3.54 -77.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162967737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.887 kcal (2) G-P(sol) polarization free energy of solvation -80.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds