Wall clock time and date at job start Tue Mar 31 2020 11:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46936 * 2 1 4 4 H 1.09002 * 109.47008 * 55.01019 * 3 2 1 5 5 C 1.50704 * 109.46413 * 175.00198 * 3 2 1 6 6 H 1.07999 * 119.99779 * 120.00583 * 5 3 2 7 7 C 1.37874 * 120.00000 * 299.99996 * 5 3 2 8 8 N 1.31513 * 119.99853 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 120.00212 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.46763 * 90.00232 * 9 7 5 11 11 H 1.48503 * 109.47191 * 210.00098 * 9 7 5 12 12 H 1.48500 * 109.47235 * 330.00150 * 9 7 5 13 13 N 1.46492 * 109.47223 * 295.00300 * 3 2 1 14 14 C 1.34773 * 120.00279 * 85.00590 * 13 3 2 15 15 O 1.21620 * 119.99902 * 359.97438 * 14 13 3 16 16 C 1.47300 * 119.99975 * 179.97438 * 14 13 3 17 17 C 1.37215 * 128.57925 * 90.00311 * 16 14 13 18 18 C 1.50702 * 126.72449 * 0.02562 * 17 16 14 19 19 O 1.33500 * 106.54998 * 179.97438 * 17 16 14 20 20 N 1.20649 * 113.38364 * 359.71985 * 19 17 16 21 21 C 1.30839 * 112.10791 * 0.46643 * 20 19 17 22 22 C 1.48389 * 127.44074 * 179.83299 * 21 20 19 23 23 C 1.39289 * 119.72122 * 334.67784 * 22 21 20 24 24 C 1.38465 * 119.06613 * 179.72358 * 23 22 21 25 25 C 1.38741 * 118.49872 * 0.25575 * 24 23 22 26 26 C 1.38322 * 119.35794 * 359.97438 * 25 24 23 27 27 N 1.31700 * 120.89384 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.46415 * 299.99657 * 1 2 3 29 29 H 1.08996 * 109.47155 * 59.99559 * 1 2 3 30 30 H 1.08995 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46415 * 240.00343 * 2 1 3 32 32 H 1.08996 * 109.47155 * 120.00441 * 2 1 3 33 33 H 0.97003 * 120.00388 * 180.02562 * 8 7 5 34 34 H 0.97007 * 119.99757 * 264.99633 * 13 3 2 35 35 H 1.08999 * 109.46979 * 90.00621 * 18 17 16 36 36 H 1.08996 * 109.47093 * 210.00607 * 18 17 16 37 37 H 1.09003 * 109.46747 * 330.00317 * 18 17 16 38 38 H 1.08002 * 120.47137 * 0.02562 * 23 22 21 39 39 H 1.07994 * 120.74875 * 180.27396 * 24 23 22 40 40 H 1.08000 * 120.31709 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.54991 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 5.4540 0.8801 1.3361 9 14 3.0964 0.1087 2.5700 10 1 2.8756 -1.3274 2.2632 11 1 3.7938 0.2345 3.8751 12 1 1.7877 0.8071 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4352 2.6645 -1.3668 15 8 -0.3417 2.6320 -0.4316 16 6 0.0457 3.3236 -2.6252 17 6 -0.5784 2.7787 -3.7190 18 6 -1.0186 1.3469 -3.8851 19 8 -0.7204 3.7656 -4.6067 20 7 -0.2857 4.8228 -4.2209 21 6 0.2299 4.7351 -3.0216 22 6 0.8581 5.8204 -2.2281 23 6 1.4224 6.9145 -2.8798 24 6 1.9998 7.9221 -2.1259 25 6 1.9981 7.7988 -0.7440 26 6 1.4240 6.6822 -0.1635 27 7 0.8805 5.7388 -0.9045 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.8772 0.4816 2.1127 34 1 2.2720 2.1232 -1.9977 35 1 -2.0395 1.2360 -3.5199 36 1 -0.9783 1.0745 -4.9397 37 1 -0.3561 0.6949 -3.3158 38 1 1.4054 6.9784 -3.9578 39 1 2.4412 8.7847 -2.6028 40 1 2.4401 8.5675 -0.1275 41 1 1.4213 6.5828 0.9119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183791062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:04 Heat of formation + Delta-G solvation = 64.304723 kcal Electronic energy + Delta-G solvation = -26518.893048 eV Core-core repulsion = 22788.532925 eV Total energy + Delta-G solvation = -3730.360123 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.84737 -40.08025 -39.04569 -35.34207 -34.26534 -33.59090 -32.53763 -32.30965 -31.46921 -30.71651 -28.10098 -27.48315 -25.11655 -23.95491 -23.40327 -22.55868 -21.09472 -20.27658 -19.54662 -17.95692 -17.76238 -17.31945 -16.53488 -16.09925 -15.93989 -15.61407 -15.33376 -14.78368 -14.30964 -14.04657 -13.91780 -13.49628 -13.34346 -13.30710 -13.09218 -12.98220 -12.65422 -12.30986 -11.94455 -11.86900 -11.80365 -11.34275 -11.07416 -10.91432 -10.73607 -10.62558 -9.93869 -9.92477 -9.68367 -9.46841 -9.35065 -9.26580 -9.14533 -8.86939 -8.74735 -8.05707 -6.20444 -4.22619 0.61475 1.20771 1.38296 2.14220 2.81706 3.09076 3.23214 3.35482 3.40973 3.47056 3.80595 4.06003 4.23410 4.31878 4.71105 4.76495 4.90576 4.96393 5.04951 5.12628 5.14765 5.21320 5.31278 5.42807 5.53647 5.61510 5.70932 5.84991 5.95942 5.97209 6.01135 6.06327 6.16698 6.55518 6.63881 6.69275 6.83347 6.94713 7.26775 7.30830 7.51968 7.91628 8.13564 8.15705 8.52741 8.76834 8.93726 9.40263 10.91684 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011713 B = 0.005383 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.980449 B = 5200.154051 C = 6840.067317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.245 3.755 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.079 3.921 8 N -0.893 5.893 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.689 5.689 14 C 0.595 3.405 15 O -0.525 6.525 16 C -0.203 4.203 17 C 0.001 3.999 18 C -0.076 4.076 19 O 0.105 5.895 20 N -0.343 5.343 21 C 0.092 3.908 22 C 0.190 3.810 23 C -0.142 4.142 24 C -0.077 4.077 25 C -0.163 4.163 26 C 0.113 3.887 27 N -0.445 5.445 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.267 0.733 34 H 0.393 0.607 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 8.013 -10.060 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.142 3.858 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.530 5.530 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.183 1.183 13 N -0.337 5.337 14 C 0.377 3.623 15 O -0.402 6.402 16 C -0.211 4.211 17 C -0.062 4.062 18 C -0.133 4.133 19 O 0.039 5.961 20 N -0.046 5.046 21 C -0.068 4.068 22 C 0.053 3.947 23 C -0.164 4.164 24 C -0.103 4.103 25 C -0.183 4.183 26 C -0.046 4.046 27 N -0.155 5.155 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.227 0.773 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.256 8.171 -9.733 16.331 hybrid contribution 0.582 -0.053 0.633 0.861 sum -9.674 8.118 -9.101 15.566 Atomic orbital electron populations 1.21901 0.96945 0.99075 1.02319 1.22304 0.94355 0.99939 1.01197 1.19172 0.95667 0.88361 0.82619 0.93092 1.21025 0.88556 1.39638 1.07807 0.90335 1.24816 0.94844 0.95172 0.97604 1.69869 1.08689 1.44577 1.29827 0.86925 0.81075 0.79954 0.80936 1.20219 1.22184 1.18343 1.46084 1.14108 1.55473 1.17996 1.16602 0.82902 0.78140 0.84646 1.90781 1.51822 1.59108 1.38472 1.22266 1.07642 0.93247 0.97972 1.24524 0.99607 0.93679 0.88348 1.20466 1.03345 0.84789 1.04720 1.84465 1.60005 1.12391 1.39269 1.73851 1.13983 1.03479 1.13286 1.22481 1.00931 0.92238 0.91162 1.18221 0.96219 0.90900 0.89364 1.22011 0.98796 0.94036 1.01516 1.21514 0.96618 0.98236 0.93951 1.22315 1.00476 0.99817 0.95700 1.22833 0.92601 0.88644 1.00498 1.67574 1.14793 1.28123 1.04992 0.92747 0.93060 0.94829 0.92231 0.92683 0.92321 0.77345 0.88776 0.89206 0.88472 0.84435 0.84322 0.84275 0.81930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.51 37.16 0.32 -2.50 16 2 C -0.14 -3.02 5.11 -26.73 -0.14 -3.16 16 3 C 0.24 5.79 1.83 -69.08 -0.13 5.67 16 4 H 0.05 1.35 6.64 -51.93 -0.34 1.00 16 5 C -0.53 -14.35 9.31 -34.44 -0.32 -14.67 16 6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 9 Si 0.88 21.58 24.41 -169.99 -4.15 17.43 16 10 H -0.28 -6.50 6.83 56.52 0.39 -6.12 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 13 N -0.69 -14.11 5.02 -56.05 -0.28 -14.39 16 14 C 0.59 11.85 5.66 -12.58 -0.07 11.78 16 15 O -0.52 -12.02 14.24 5.26 0.07 -11.94 16 16 C -0.20 -3.49 6.24 -102.69 -0.64 -4.13 16 17 C 0.00 0.02 7.53 -34.68 -0.26 -0.24 16 18 C -0.08 -0.73 10.32 36.01 0.37 -0.36 16 19 O 0.11 1.45 11.05 18.64 0.21 1.65 16 20 N -0.34 -5.25 11.99 34.60 0.41 -4.84 16 21 C 0.09 1.55 7.20 -80.21 -0.58 0.97 16 22 C 0.19 3.14 6.75 -82.95 -0.56 2.59 16 23 C -0.14 -1.87 9.77 -39.11 -0.38 -2.25 16 24 C -0.08 -0.83 10.17 -39.31 -0.40 -1.23 16 25 C -0.16 -1.80 10.11 -39.36 -0.40 -2.20 16 26 C 0.11 1.61 11.18 -17.58 -0.20 1.42 16 27 N -0.45 -7.94 9.78 -9.77 -0.10 -8.03 16 28 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 29 H 0.05 0.95 5.64 -51.93 -0.29 0.66 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.26 3.21 -51.93 -0.17 1.10 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 34 H 0.39 7.46 8.52 -40.82 -0.35 7.11 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -33.68 347.08 -6.27 -39.95 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.96 Total: 6.71 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.48 Total: -6.21 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.81 Total: -52.82 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.28 Total: -10.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.15 Total: 17.43 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.68 -6.27 -39.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183791062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.252 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds