Wall clock time and date at job start Tue Mar 31 2020 11:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46936 * 2 1 4 4 H 1.09002 * 109.47008 * 55.01019 * 3 2 1 5 5 C 1.50704 * 109.46413 * 175.00198 * 3 2 1 6 6 H 1.07999 * 119.99779 * 120.00583 * 5 3 2 7 7 C 1.37874 * 120.00000 * 299.99996 * 5 3 2 8 8 N 1.31513 * 119.99853 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 120.00212 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.46763 * 90.00232 * 9 7 5 11 11 H 1.48503 * 109.47191 * 210.00098 * 9 7 5 12 12 H 1.48500 * 109.47235 * 330.00150 * 9 7 5 13 13 N 1.46492 * 109.47223 * 295.00300 * 3 2 1 14 14 C 1.34773 * 120.00279 * 85.00590 * 13 3 2 15 15 O 1.21620 * 119.99902 * 359.97438 * 14 13 3 16 16 C 1.47300 * 119.99975 * 179.97438 * 14 13 3 17 17 C 1.37215 * 128.57925 * 90.00311 * 16 14 13 18 18 C 1.50702 * 126.72449 * 0.02562 * 17 16 14 19 19 O 1.33500 * 106.54998 * 179.97438 * 17 16 14 20 20 N 1.20649 * 113.38364 * 359.71985 * 19 17 16 21 21 C 1.30839 * 112.10791 * 0.46643 * 20 19 17 22 22 C 1.48389 * 127.44074 * 179.83299 * 21 20 19 23 23 C 1.39289 * 119.72122 * 334.67784 * 22 21 20 24 24 C 1.38465 * 119.06613 * 179.72358 * 23 22 21 25 25 C 1.38741 * 118.49872 * 0.25575 * 24 23 22 26 26 C 1.38322 * 119.35794 * 359.97438 * 25 24 23 27 27 N 1.31700 * 120.89384 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.46415 * 299.99657 * 1 2 3 29 29 H 1.08996 * 109.47155 * 59.99559 * 1 2 3 30 30 H 1.08995 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46415 * 240.00343 * 2 1 3 32 32 H 1.08996 * 109.47155 * 120.00441 * 2 1 3 33 33 H 0.97003 * 120.00388 * 180.02562 * 8 7 5 34 34 H 0.97007 * 119.99757 * 264.99633 * 13 3 2 35 35 H 1.08999 * 109.46979 * 90.00621 * 18 17 16 36 36 H 1.08996 * 109.47093 * 210.00607 * 18 17 16 37 37 H 1.09003 * 109.46747 * 330.00317 * 18 17 16 38 38 H 1.08002 * 120.47137 * 0.02562 * 23 22 21 39 39 H 1.07994 * 120.74875 * 180.27396 * 24 23 22 40 40 H 1.08000 * 120.31709 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.54991 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 5.4540 0.8801 1.3361 9 14 3.0964 0.1087 2.5700 10 1 2.8756 -1.3274 2.2632 11 1 3.7938 0.2345 3.8751 12 1 1.7877 0.8071 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4352 2.6645 -1.3668 15 8 -0.3417 2.6320 -0.4316 16 6 0.0457 3.3236 -2.6252 17 6 -0.5784 2.7787 -3.7190 18 6 -1.0186 1.3469 -3.8851 19 8 -0.7204 3.7656 -4.6067 20 7 -0.2857 4.8228 -4.2209 21 6 0.2299 4.7351 -3.0216 22 6 0.8581 5.8204 -2.2281 23 6 1.4224 6.9145 -2.8798 24 6 1.9998 7.9221 -2.1259 25 6 1.9981 7.7988 -0.7440 26 6 1.4240 6.6822 -0.1635 27 7 0.8805 5.7388 -0.9045 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.8772 0.4816 2.1127 34 1 2.2720 2.1232 -1.9977 35 1 -2.0395 1.2360 -3.5199 36 1 -0.9783 1.0745 -4.9397 37 1 -0.3561 0.6949 -3.3158 38 1 1.4054 6.9784 -3.9578 39 1 2.4412 8.7847 -2.6028 40 1 2.4401 8.5675 -0.1275 41 1 1.4213 6.5828 0.9119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183791062.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:03 Heat of formation + Delta-G solvation = 40.484326 kcal Electronic energy + Delta-G solvation = -26519.925978 eV Core-core repulsion = 22788.532925 eV Total energy + Delta-G solvation = -3731.393053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.02187 -41.12795 -40.67932 -37.13151 -35.46078 -34.71457 -34.34725 -33.54715 -33.11952 -31.78245 -29.58160 -28.88381 -26.39185 -25.17067 -24.60621 -24.21432 -22.52434 -21.65198 -21.13140 -19.52840 -18.94454 -18.51986 -18.05191 -17.52101 -17.30082 -16.96981 -16.61633 -16.28387 -16.03315 -15.21642 -15.14565 -15.03282 -14.77963 -14.45754 -14.11045 -14.04796 -14.00679 -13.73977 -13.60375 -13.53669 -13.00722 -12.83218 -12.76878 -12.48245 -12.32633 -11.87235 -11.84566 -11.41322 -11.25693 -11.01704 -10.95269 -10.85443 -10.53439 -10.44396 -9.92005 -9.81626 -8.38517 -6.44271 -0.44346 0.21437 0.26435 0.98248 1.26522 1.35216 1.45549 1.49669 1.78279 2.25846 2.28499 2.60908 2.76821 2.97175 3.15642 3.65272 3.82742 3.85865 3.96044 4.00134 4.07274 4.19987 4.24835 4.33214 4.35863 4.48694 4.56638 4.61515 4.69625 4.73262 4.84782 5.03151 5.03976 5.07822 5.11646 5.14384 5.25286 5.39716 5.54901 5.61164 5.61636 6.12183 6.55503 6.79109 6.86250 7.00068 7.17119 7.36563 8.76907 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011713 B = 0.005383 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.980449 B = 5200.154051 C = 6840.067317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C 0.254 3.746 4 H 0.020 0.980 5 C -0.532 4.532 6 H 0.049 0.951 7 C 0.032 3.968 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.255 1.255 11 H -0.293 1.293 12 H -0.262 1.262 13 N -0.688 5.688 14 C 0.608 3.392 15 O -0.559 6.559 16 C -0.249 4.249 17 C 0.034 3.966 18 C -0.079 4.079 19 O 0.118 5.882 20 N -0.346 5.346 21 C 0.080 3.920 22 C 0.153 3.847 23 C -0.143 4.143 24 C -0.069 4.069 25 C -0.147 4.147 26 C 0.085 3.915 27 N -0.496 5.496 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.270 0.730 34 H 0.400 0.600 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.152 0.848 39 H 0.183 0.817 40 H 0.178 0.822 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 8.113 -11.424 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.175 4.175 3 C 0.150 3.850 4 H 0.038 0.962 5 C -0.570 4.570 6 H 0.067 0.933 7 C -0.168 4.168 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.180 1.180 11 H -0.220 1.220 12 H -0.186 1.186 13 N -0.336 5.336 14 C 0.393 3.607 15 O -0.438 6.438 16 C -0.258 4.258 17 C -0.029 4.029 18 C -0.136 4.136 19 O 0.051 5.949 20 N -0.049 5.049 21 C -0.080 4.080 22 C 0.017 3.983 23 C -0.164 4.164 24 C -0.094 4.094 25 C -0.167 4.167 26 C -0.074 4.074 27 N -0.206 5.206 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.234 0.766 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.111 0.889 38 H 0.170 0.830 39 H 0.200 0.800 40 H 0.196 0.804 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.335 8.277 -11.136 17.916 hybrid contribution 0.950 0.038 0.981 1.366 sum -10.385 8.315 -10.155 16.736 Atomic orbital electron populations 1.21799 0.94940 1.00938 1.01657 1.22203 0.96098 0.97860 1.01350 1.18817 0.93218 0.89857 0.83097 0.96236 1.21215 0.90241 1.38647 1.06942 0.93274 1.25525 0.95747 0.95798 0.99710 1.69978 1.10297 1.46091 1.30873 0.86040 0.79239 0.80161 0.78245 1.18006 1.22041 1.18617 1.45917 1.14798 1.55758 1.17119 1.16740 0.81863 0.76966 0.85171 1.90748 1.52692 1.60217 1.40123 1.22000 1.11352 0.94107 0.98300 1.25143 0.96436 0.94778 0.86575 1.20772 1.03866 0.81659 1.07283 1.84459 1.59353 1.12189 1.38888 1.73817 1.14239 1.04046 1.12770 1.22738 1.01213 0.92405 0.91659 1.18476 0.98206 0.92337 0.89319 1.22265 0.98149 0.93554 1.02412 1.22047 0.95103 0.98564 0.93726 1.22706 0.98455 0.99051 0.96468 1.23168 0.93621 0.89675 1.00916 1.67445 1.16775 1.30214 1.06177 0.94768 0.92472 0.91558 0.90781 0.93681 0.92046 0.76612 0.87023 0.85516 0.88874 0.83032 0.79978 0.80412 0.81504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.51 71.98 0.61 -4.46 16 2 C -0.14 -5.80 5.11 30.60 0.16 -5.65 16 3 C 0.25 12.28 1.83 44.25 0.08 12.36 16 4 H 0.02 1.08 6.64 -2.39 -0.02 1.06 16 5 C -0.53 -29.60 9.31 25.60 0.24 -29.36 16 6 H 0.05 2.95 7.98 -2.91 -0.02 2.93 16 7 C 0.03 1.82 5.45 84.65 0.46 2.28 16 8 N -0.93 -56.29 13.96 21.45 0.30 -55.99 16 9 Si 0.94 44.89 24.41 68.60 1.67 46.56 16 10 H -0.25 -11.31 6.83 99.48 0.68 -10.63 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.26 -12.56 6.53 99.48 0.65 -11.91 16 13 N -0.69 -28.90 5.02 -449.50 -2.26 -31.15 16 14 C 0.61 24.75 5.66 86.63 0.49 25.24 16 15 O -0.56 -26.28 14.24 -4.10 -0.06 -26.34 16 16 C -0.25 -8.61 6.24 -18.61 -0.12 -8.73 16 17 C 0.03 0.87 7.53 25.45 0.19 1.07 16 18 C -0.08 -1.28 10.32 71.24 0.74 -0.55 16 19 O 0.12 3.05 11.05 76.94 0.85 3.90 16 20 N -0.35 -10.38 11.99 -45.02 -0.54 -10.92 16 21 C 0.08 2.72 7.20 44.52 0.32 3.05 16 22 C 0.15 5.17 6.75 41.98 0.28 5.46 16 23 C -0.14 -3.62 9.77 22.58 0.22 -3.40 16 24 C -0.07 -1.31 10.17 22.44 0.23 -1.08 16 25 C -0.15 -2.99 10.11 22.41 0.23 -2.76 16 26 C 0.08 2.47 11.18 84.73 0.95 3.42 16 27 N -0.50 -18.44 9.78 -184.84 -1.81 -20.24 16 28 H 0.03 1.40 7.84 -2.39 -0.02 1.38 16 29 H 0.06 2.04 5.64 -2.39 -0.01 2.03 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.05 2.00 3.21 -2.39 -0.01 2.00 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.40 15.65 8.52 -92.70 -0.79 14.86 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 36 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.67 8.10 -2.39 -0.02 1.65 16 38 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 39 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 40 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -77.00 347.08 3.44 -73.55 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.21 Total: 23.76 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.08 Total: -3.12 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -4.30 Total: -118.30 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.79 Total: -22.44 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.67 Total: 46.56 kcal Total: -77.00 3.44 -73.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183791062.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.039 kcal (2) G-P(sol) polarization free energy of solvation -76.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds