Wall clock time and date at job start Tue Mar 31 2020 11:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 N 1.46496 * 109.46791 * 180.02562 * 16 14 13 18 18 C 1.35857 * 119.69525 * 269.71705 * 17 16 14 19 19 N 1.29845 * 123.36502 * 179.72707 * 18 17 16 20 20 C 1.35650 * 121.61414 * 0.56143 * 19 18 17 21 21 C 1.39643 * 121.64114 * 179.73341 * 20 19 18 22 22 C 1.37672 * 119.68386 * 180.02562 * 21 20 19 23 23 C 1.38884 * 120.81918 * 359.97438 * 22 21 20 24 24 C 1.37766 * 120.57272 * 359.97438 * 23 22 21 25 25 C 1.39343 * 119.51250 * 0.02562 * 24 23 22 26 26 C 1.35343 * 119.70101 * 89.99828 * 17 16 14 27 27 O 1.21731 * 121.29561 * 359.97438 * 26 17 16 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 35 35 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 36 36 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 37 37 H 1.07998 * 118.31905 * 0.02562 * 18 17 16 38 38 H 1.07999 * 120.16082 * 0.02562 * 21 20 19 39 39 H 1.07998 * 119.58859 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.71853 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.24610 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 7 -1.3221 3.8710 -2.5266 18 6 -2.3842 3.0971 -2.8712 19 7 -3.6168 3.4952 -2.7814 20 6 -3.9322 4.7383 -2.3394 21 6 -5.2574 5.1689 -2.2478 22 6 -5.5316 6.4395 -1.7941 23 6 -4.5058 7.3001 -1.4252 24 6 -3.1906 6.8979 -1.5057 25 6 -2.8917 5.6158 -1.9623 26 6 -1.5073 5.1321 -2.0714 27 8 -0.5646 5.8380 -1.7635 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0605 2.9503 34 1 2.2720 2.1232 -1.9977 35 1 0.7278 4.1531 -2.8677 36 1 0.0674 2.6131 -3.4685 37 1 -2.1937 2.0979 -3.2340 38 1 -6.0634 4.5085 -2.5315 39 1 -6.5570 6.7708 -1.7235 40 1 -4.7412 8.2930 -1.0713 41 1 -2.3972 7.5713 -1.2170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183950021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:08 Heat of formation + Delta-G solvation = -19.990390 kcal Electronic energy + Delta-G solvation = -25929.296687 eV Core-core repulsion = 22195.281254 eV Total energy + Delta-G solvation = -3734.015433 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68845 -39.32477 -38.30696 -37.44940 -35.24772 -34.21246 -32.50579 -31.54597 -31.07946 -30.12108 -28.51548 -26.73687 -24.88243 -24.06136 -22.99387 -22.02656 -20.69675 -19.49295 -18.99279 -18.79316 -17.67560 -17.21805 -16.16184 -15.73806 -15.44580 -15.16269 -15.13496 -14.87369 -14.83525 -14.16027 -14.06500 -13.93837 -13.37185 -13.23851 -12.81813 -12.73543 -12.31893 -12.13171 -11.96415 -11.82072 -11.47496 -11.31897 -11.02433 -10.89227 -10.45396 -10.34340 -10.25194 -10.24557 -10.05592 -9.71094 -9.29555 -9.15253 -9.11024 -8.55734 -8.13539 -7.96316 -6.17092 -4.26982 0.44340 0.71733 2.14267 2.27615 2.71902 3.13110 3.22169 3.29112 3.30282 3.79641 3.93154 4.00889 4.16684 4.32585 4.54841 4.64919 4.75668 4.88764 5.04946 5.14170 5.17316 5.19291 5.27336 5.39724 5.75363 5.90210 5.96754 6.18508 6.22293 6.30816 6.35030 6.48605 6.56591 6.64483 6.93138 7.10667 7.25949 7.32548 7.53130 7.63116 7.67762 7.77586 7.82849 8.11028 8.50571 8.69191 8.96089 9.40170 10.88242 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024945 B = 0.003069 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.179500 B = 9120.575767 C = 9504.984362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.486 3.514 15 O -0.536 6.536 16 C 0.069 3.931 17 N -0.526 5.526 18 C 0.394 3.606 19 N -0.531 5.531 20 C 0.157 3.843 21 C -0.115 4.115 22 C -0.077 4.077 23 C -0.145 4.145 24 C -0.040 4.040 25 C -0.193 4.193 26 C 0.552 3.448 27 O -0.505 6.505 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.024 0.976 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.390 0.610 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.199 0.801 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.655 7.416 -12.794 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.349 5.349 14 C 0.269 3.731 15 O -0.414 6.414 16 C -0.057 4.057 17 N -0.247 5.247 18 C 0.106 3.894 19 N -0.252 5.252 20 C 0.048 3.952 21 C -0.134 4.134 22 C -0.096 4.096 23 C -0.163 4.163 24 C -0.059 4.059 25 C -0.199 4.199 26 C 0.346 3.654 27 O -0.379 6.379 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.223 0.777 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.216 0.784 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.327 7.386 -11.870 20.018 hybrid contribution 1.994 0.324 0.100 2.022 sum -12.333 7.710 -11.770 18.711 Atomic orbital electron populations 1.21823 0.98363 0.98089 1.01001 1.21937 0.92534 0.99685 1.02455 1.18824 0.94361 0.89136 0.80678 0.93337 1.21208 0.90557 1.39190 1.06460 0.91998 1.24889 0.98704 0.94729 0.95342 1.69889 1.35214 1.37497 1.09286 0.86439 0.84710 0.77684 0.78227 1.20548 1.21046 1.19810 1.46446 1.14031 1.55532 1.18874 1.20380 0.83700 0.80032 0.89004 1.90736 1.51488 1.59334 1.39848 1.21945 0.83075 1.01590 0.99109 1.46166 1.08590 1.14091 1.55884 1.24722 0.81631 0.95753 0.87249 1.68666 1.16191 1.15962 1.24336 1.18837 0.93723 0.88691 0.93955 1.20831 0.94366 0.96441 1.01747 1.21265 0.99651 0.93092 0.95579 1.21151 0.92117 1.00545 1.02511 1.21032 0.97292 0.93726 0.93894 1.20577 0.92020 0.97768 1.09492 1.18371 0.89670 0.80585 0.76815 1.90874 1.43601 1.56013 1.47389 0.94608 0.93237 0.95696 0.88190 0.94873 0.92496 0.77726 0.85829 0.86111 0.78450 0.84429 0.85049 0.85115 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.52 37.16 0.32 -2.55 16 2 C -0.13 -2.95 5.45 -26.74 -0.15 -3.10 16 3 C 0.27 6.58 2.24 -69.09 -0.15 6.42 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.39 11.29 55.43 0.63 -23.77 16 9 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.70 -13.36 5.02 -54.94 -0.28 -13.63 16 14 C 0.49 8.83 6.46 -10.98 -0.07 8.76 16 15 O -0.54 -12.06 13.57 5.56 0.08 -11.98 16 16 C 0.07 0.87 5.85 -5.19 -0.03 0.84 16 17 N -0.53 -7.37 2.09 -120.14 -0.25 -7.62 16 18 C 0.39 4.73 11.41 -90.17 -1.03 3.70 16 19 N -0.53 -7.08 10.37 -12.01 -0.12 -7.21 16 20 C 0.16 2.16 6.63 -84.51 -0.56 1.60 16 21 C -0.11 -1.25 10.03 -39.26 -0.39 -1.65 16 22 C -0.08 -0.69 10.00 -39.55 -0.40 -1.09 16 23 C -0.14 -1.41 10.02 -39.51 -0.40 -1.81 16 24 C -0.04 -0.51 9.68 -39.34 -0.38 -0.89 16 25 C -0.19 -2.86 5.89 -104.77 -0.62 -3.48 16 26 C 0.55 9.17 7.66 -12.43 -0.10 9.08 16 27 O -0.51 -9.71 16.32 5.16 0.08 -9.63 16 28 H 0.03 0.70 5.65 -51.93 -0.29 0.41 16 29 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.39 6.19 8.54 -40.82 -0.35 5.84 16 35 H 0.12 1.51 7.46 -51.93 -0.39 1.12 16 36 H 0.12 0.91 7.99 -51.93 -0.41 0.50 16 37 H 0.20 1.55 7.99 -52.49 -0.42 1.13 16 38 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.14 1.68 7.83 -52.49 -0.41 1.27 16 LS Contribution 346.72 15.07 5.22 5.22 Total: -1.00 -34.29 346.72 -9.05 -43.34 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.04 Total: 6.51 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -4.35 Total: 3.43 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.03 Total: -52.23 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.16 Total: -21.61 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.29 -9.05 -43.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183950021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.347 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds