Wall clock time and date at job start Tue Mar 31 2020 11:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 N 1.46496 * 109.46791 * 180.02562 * 16 14 13 18 18 C 1.35857 * 119.69525 * 269.71705 * 17 16 14 19 19 N 1.29845 * 123.36502 * 179.72707 * 18 17 16 20 20 C 1.35650 * 121.61414 * 0.56143 * 19 18 17 21 21 C 1.39643 * 121.64114 * 179.73341 * 20 19 18 22 22 C 1.37672 * 119.68386 * 180.02562 * 21 20 19 23 23 C 1.38884 * 120.81918 * 359.97438 * 22 21 20 24 24 C 1.37766 * 120.57272 * 359.97438 * 23 22 21 25 25 C 1.39343 * 119.51250 * 0.02562 * 24 23 22 26 26 C 1.35343 * 119.70101 * 89.99828 * 17 16 14 27 27 O 1.21731 * 121.29561 * 359.97438 * 26 17 16 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 35 35 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 36 36 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 37 37 H 1.07998 * 118.31905 * 0.02562 * 18 17 16 38 38 H 1.07999 * 120.16082 * 0.02562 * 21 20 19 39 39 H 1.07998 * 119.58859 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.71853 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.24610 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 7 -1.3221 3.8710 -2.5266 18 6 -2.3842 3.0971 -2.8712 19 7 -3.6168 3.4952 -2.7814 20 6 -3.9322 4.7383 -2.3394 21 6 -5.2574 5.1689 -2.2478 22 6 -5.5316 6.4395 -1.7941 23 6 -4.5058 7.3001 -1.4252 24 6 -3.1906 6.8979 -1.5057 25 6 -2.8917 5.6158 -1.9623 26 6 -1.5073 5.1321 -2.0714 27 8 -0.5646 5.8380 -1.7635 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0605 2.9503 34 1 2.2720 2.1232 -1.9977 35 1 0.7278 4.1531 -2.8677 36 1 0.0674 2.6131 -3.4685 37 1 -2.1937 2.0979 -3.2340 38 1 -6.0634 4.5085 -2.5315 39 1 -6.5570 6.7708 -1.7235 40 1 -4.7412 8.2930 -1.0713 41 1 -2.3972 7.5713 -1.2170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183950021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:07 Heat of formation + Delta-G solvation = -42.483113 kcal Electronic energy + Delta-G solvation = -25930.272045 eV Core-core repulsion = 22195.281254 eV Total energy + Delta-G solvation = -3734.990791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.74386 -40.71558 -39.44454 -38.53407 -36.97667 -35.30980 -34.35087 -32.93494 -32.37842 -31.04300 -29.87195 -28.43591 -25.83692 -25.31531 -24.64562 -22.97255 -22.28510 -21.21846 -19.94791 -19.79361 -19.21276 -18.35816 -17.80139 -17.16608 -16.64314 -16.60175 -16.35946 -16.09061 -15.97635 -15.69876 -15.01875 -14.84139 -14.78735 -14.58961 -14.39422 -14.20923 -13.61472 -13.30908 -13.16372 -13.08714 -12.95218 -12.88941 -12.72644 -12.69800 -12.17308 -12.06697 -11.58700 -11.50975 -11.41394 -11.07516 -11.04180 -10.64988 -10.51453 -10.16941 -9.68557 -9.11238 -8.17751 -6.35125 -0.47570 -0.21594 1.10354 1.25238 1.43383 1.44462 1.54431 1.70426 1.78869 2.34716 2.58859 2.96694 3.04422 3.12120 3.23676 3.65852 3.72245 3.92022 3.95571 4.09111 4.22481 4.25946 4.34063 4.49910 4.53513 4.58375 4.76407 4.89415 5.04381 5.06519 5.11956 5.25265 5.27995 5.38534 5.43253 5.51463 5.55292 5.58984 5.79265 5.81630 5.90656 6.16742 6.50884 6.73384 6.80494 6.90699 7.31650 7.51743 8.87358 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024945 B = 0.003069 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.179500 B = 9120.575767 C = 9504.984362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.011 1.011 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.283 1.283 11 H -0.284 1.284 12 H -0.257 1.257 13 N -0.696 5.696 14 C 0.483 3.517 15 O -0.584 6.584 16 C 0.081 3.919 17 N -0.527 5.527 18 C 0.386 3.614 19 N -0.539 5.539 20 C 0.134 3.866 21 C -0.119 4.119 22 C -0.063 4.063 23 C -0.134 4.134 24 C -0.063 4.063 25 C -0.225 4.225 26 C 0.538 3.462 27 O -0.551 6.551 28 H 0.052 0.948 29 H 0.015 0.985 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.264 0.736 34 H 0.409 0.591 35 H 0.130 0.870 36 H 0.185 0.815 37 H 0.242 0.758 38 H 0.157 0.843 39 H 0.175 0.825 40 H 0.164 0.836 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.817 7.374 -15.175 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.006 0.994 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.209 1.209 11 H -0.210 1.210 12 H -0.181 1.181 13 N -0.346 5.346 14 C 0.268 3.732 15 O -0.465 6.465 16 C -0.045 4.045 17 N -0.248 5.248 18 C 0.100 3.900 19 N -0.259 5.259 20 C 0.025 3.975 21 C -0.138 4.138 22 C -0.081 4.081 23 C -0.152 4.152 24 C -0.083 4.083 25 C -0.231 4.231 26 C 0.333 3.667 27 O -0.429 6.429 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.147 0.853 36 H 0.202 0.798 37 H 0.258 0.742 38 H 0.175 0.825 39 H 0.192 0.808 40 H 0.181 0.819 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.508 7.333 -14.317 22.344 hybrid contribution 2.206 0.412 0.873 2.407 sum -13.302 7.746 -13.444 20.437 Atomic orbital electron populations 1.21658 0.96830 0.99199 1.00141 1.21755 0.93808 0.98685 1.01577 1.18343 0.93534 0.89347 0.81131 0.99355 1.21604 0.91499 1.38734 1.06763 0.90819 1.25771 1.03246 0.94462 0.95097 1.70055 1.37052 1.38453 1.09835 0.85398 0.79268 0.77239 0.78756 1.20908 1.20954 1.18074 1.46144 1.15114 1.55569 1.17783 1.21307 0.82516 0.78948 0.90417 1.90725 1.52769 1.60845 1.42153 1.22059 0.82638 1.02602 0.97161 1.46230 1.09598 1.13502 1.55439 1.25587 0.80867 0.96835 0.86741 1.68674 1.16905 1.15869 1.24417 1.19198 0.94646 0.88853 0.94776 1.21217 0.93650 0.97619 1.01359 1.21768 1.01448 0.91899 0.93020 1.21570 0.90853 1.02014 1.00735 1.21194 0.98758 0.93285 0.95046 1.20748 0.91579 0.99144 1.11590 1.18856 0.90145 0.81351 0.76396 1.90823 1.44845 1.57431 1.49770 0.92952 0.96588 0.93410 0.91433 0.93167 0.92678 0.75536 0.85254 0.79808 0.74174 0.82508 0.80800 0.81880 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 8.52 71.98 0.61 -4.53 16 2 C -0.12 -5.61 5.45 30.59 0.17 -5.44 16 3 C 0.28 13.94 2.24 44.24 0.10 14.04 16 4 H -0.01 -0.70 7.58 -2.39 -0.02 -0.72 16 5 C -0.55 -28.43 8.73 25.60 0.22 -28.20 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.77 5.29 84.65 0.45 1.21 16 8 N -0.92 -52.40 11.29 21.45 0.24 -52.16 16 9 Si 0.97 41.91 29.54 68.60 2.03 43.94 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 13 N -0.70 -26.30 5.02 -446.11 -2.24 -28.54 16 14 C 0.48 17.39 6.46 87.66 0.57 17.96 16 15 O -0.58 -27.04 13.57 -3.03 -0.04 -27.08 16 16 C 0.08 1.89 5.85 85.64 0.50 2.39 16 17 N -0.53 -14.39 2.09 -651.90 -1.36 -15.76 16 18 C 0.39 8.60 11.41 180.19 2.06 10.66 16 19 N -0.54 -13.69 10.37 -191.92 -1.99 -15.68 16 20 C 0.13 3.59 6.63 39.63 0.26 3.85 16 21 C -0.12 -2.35 10.03 22.48 0.23 -2.12 16 22 C -0.06 -0.93 10.00 22.29 0.22 -0.70 16 23 C -0.13 -2.33 10.02 22.31 0.22 -2.11 16 24 C -0.06 -1.63 9.68 22.42 0.22 -1.42 16 25 C -0.23 -6.83 5.89 -19.96 -0.12 -6.95 16 26 C 0.54 18.44 7.66 86.47 0.66 19.10 16 27 O -0.55 -22.36 16.32 -4.45 -0.07 -22.43 16 28 H 0.05 2.02 5.65 -2.39 -0.01 2.00 16 29 H 0.01 0.74 7.85 -2.39 -0.02 0.72 16 30 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.07 3.65 5.95 -2.39 -0.01 3.63 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.41 12.28 8.54 -92.71 -0.79 11.49 16 35 H 0.13 2.98 7.46 -2.38 -0.02 2.97 16 36 H 0.18 1.92 7.99 -2.39 -0.02 1.90 16 37 H 0.24 2.89 7.99 -2.91 -0.02 2.87 16 38 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 40 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 41 H 0.13 3.37 7.83 -2.91 -0.02 3.34 16 Total: -1.00 -81.51 346.72 3.21 -78.30 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.28 Total: 21.68 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 6.37 Total: 17.73 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -5.35 Total: -112.14 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -0.11 Total: -49.52 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -81.51 3.21 -78.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183950021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.817 kcal (2) G-P(sol) polarization free energy of solvation -81.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds