Wall clock time and date at job start Tue Mar 31 2020 11:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47312 * 2 1 4 4 H 1.08999 * 109.47080 * 54.92791 * 3 2 1 5 5 C 1.50701 * 109.47411 * 174.92402 * 3 2 1 6 6 H 1.07996 * 120.00337 * 119.99733 * 5 3 2 7 7 C 1.37884 * 119.99924 * 300.00459 * 5 3 2 8 8 N 1.31516 * 119.99478 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99920 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47012 * 59.99819 * 9 7 5 11 11 H 1.48503 * 109.46780 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47130 * 299.99738 * 9 7 5 13 13 N 1.46900 * 109.47156 * 294.92236 * 3 2 1 14 14 C 1.46902 * 110.99761 * 154.12924 * 13 3 2 15 15 C 1.50706 * 109.46914 * 185.62216 * 14 13 3 16 16 C 1.38255 * 119.92433 * 90.00634 * 15 14 13 17 17 C 1.38237 * 120.14287 * 180.02562 * 16 15 14 18 18 C 1.38564 * 120.00136 * 359.97438 * 17 16 15 19 19 O 1.36001 * 120.06860 * 179.97438 * 18 17 16 20 20 C 1.42898 * 117.00456 * 359.97438 * 19 18 17 21 21 F 1.39900 * 109.47156 * 300.00495 * 20 19 18 22 22 F 1.39906 * 109.47021 * 60.00044 * 20 19 18 23 23 C 1.39149 * 119.85335 * 0.02562 * 18 17 16 24 24 O 1.35993 * 120.07053 * 179.97438 * 23 18 17 25 25 C 1.42902 * 117.00031 * 179.97438 * 24 23 18 26 26 C 1.38238 * 119.92688 * 269.72615 * 15 14 13 27 27 H 1.08994 * 109.47414 * 180.50607 * 1 2 3 28 28 H 1.09002 * 109.47109 * 300.50660 * 1 2 3 29 29 H 1.09008 * 109.46929 * 60.50371 * 1 2 3 30 30 H 1.09006 * 109.47289 * 239.99954 * 2 1 3 31 31 H 1.09002 * 109.47003 * 120.00170 * 2 1 3 32 32 H 0.97001 * 119.99139 * 180.02562 * 8 7 5 33 33 H 1.00897 * 111.00511 * 278.08335 * 13 3 2 34 34 H 1.08999 * 109.47535 * 305.62083 * 14 13 3 35 35 H 1.08998 * 109.47016 * 65.62937 * 14 13 3 36 36 H 1.08001 * 119.92513 * 0.02562 * 16 15 14 37 37 H 1.08009 * 119.99830 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47435 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.47298 * 300.00067 * 25 24 23 40 40 H 1.09001 * 109.46768 * 60.00112 * 25 24 23 41 41 H 1.09003 * 109.47199 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.00282 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9819 0.8411 5 6 3.5418 1.4444 0.1257 6 1 4.1481 1.8885 -0.6498 7 6 4.1418 0.8788 1.2309 8 7 3.4034 0.3383 2.1754 9 14 6.0033 0.8805 1.3863 10 1 6.4988 2.2804 1.3860 11 1 6.3945 0.2177 2.6564 12 1 6.5964 0.1453 0.2405 13 7 1.6530 2.0987 -1.2560 14 6 1.5540 3.5539 -1.0809 15 6 1.0235 4.1771 -2.3463 16 6 -0.3391 4.3372 -2.5176 17 6 -0.8306 4.9079 -3.6768 18 6 0.0428 5.3214 -4.6699 19 8 -0.4394 5.8825 -5.8110 20 6 -1.8581 6.0148 -5.9199 21 9 -2.4516 4.7503 -5.8428 22 9 -2.3330 6.8171 -4.8767 23 6 1.4141 5.1603 -4.4974 24 8 2.2752 5.5641 -5.4694 25 6 3.6692 5.3680 -5.2235 26 6 1.9006 4.5928 -3.3306 27 1 -0.3634 -1.0275 0.0091 28 1 -0.3633 0.5217 0.8854 29 1 -0.3633 0.5060 -0.8945 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8256 -0.0592 2.9531 33 1 2.2959 1.8668 -1.9983 34 1 0.8774 3.7753 -0.2555 35 1 2.5408 3.9614 -0.8612 36 1 -1.0208 4.0157 -1.7442 37 1 -1.8955 5.0322 -3.8080 38 1 -2.1078 6.4762 -6.8752 39 1 3.9608 5.9162 -4.3277 40 1 3.8669 4.3057 -5.0799 41 1 4.2432 5.7328 -6.0753 42 1 2.9647 4.4712 -3.1922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184085717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:55 Heat of formation + Delta-G solvation = -162.358925 kcal Electronic energy + Delta-G solvation = -26570.472070 eV Core-core repulsion = 22379.593887 eV Total energy + Delta-G solvation = -4190.878183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.48927 -47.48053 -40.47209 -38.36921 -37.47561 -35.84469 -32.80296 -31.43544 -30.19523 -29.84975 -27.49176 -26.79473 -25.93318 -24.05671 -22.53557 -22.40126 -21.10054 -19.51586 -19.21414 -18.27808 -18.04957 -17.31560 -16.62002 -16.39174 -15.82683 -15.52418 -14.88225 -14.57114 -14.53111 -14.20926 -14.05029 -13.97617 -13.85119 -13.75425 -13.47476 -13.01053 -12.84480 -12.59258 -12.22572 -12.00240 -11.85591 -11.73536 -11.40519 -11.24159 -11.16865 -10.96522 -10.84501 -10.75140 -10.66293 -10.17464 -9.61855 -9.53865 -9.10544 -8.65045 -8.41209 -7.86573 -7.29693 -6.03295 -4.16727 1.32520 1.49335 2.47358 3.22162 3.24653 3.30582 3.30958 3.32119 3.75422 4.13180 4.35723 4.48407 4.81669 4.93308 4.99508 5.14094 5.16280 5.22520 5.32733 5.47039 5.51058 5.59713 5.66649 6.10869 6.17856 6.32743 6.38343 6.40765 6.51895 6.59395 6.71356 6.79353 6.87418 7.11337 7.17697 7.40253 7.43923 7.55839 7.74175 8.05316 8.09638 8.28389 8.60285 8.95312 9.50955 10.96808 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.003305 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.171767 B = 8469.093100 C = 9648.669030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.548 4.548 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.681 5.681 14 C 0.102 3.898 15 C -0.043 4.043 16 C -0.101 4.101 17 C -0.153 4.153 18 C 0.059 3.941 19 O -0.313 6.313 20 C 0.410 3.590 21 F -0.200 7.200 22 F -0.201 7.201 23 C 0.113 3.887 24 O -0.312 6.312 25 C 0.026 3.974 26 C -0.171 4.171 27 H 0.024 0.976 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.090 0.910 32 H 0.262 0.738 33 H 0.328 0.672 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.178 0.822 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.422 11.512 -14.991 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.587 4.587 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.028 4.028 15 C -0.044 4.044 16 C -0.119 4.119 17 C -0.172 4.172 18 C 0.016 3.984 19 O -0.231 6.231 20 C 0.320 3.680 21 F -0.182 7.182 22 F -0.183 7.183 23 C 0.068 3.932 24 O -0.225 6.225 25 C -0.069 4.069 26 C -0.191 4.191 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.194 0.806 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.043 11.442 -14.994 20.505 hybrid contribution 1.973 0.014 0.563 2.051 sum -6.070 11.456 -14.432 19.400 Atomic orbital electron populations 1.21705 0.98974 0.98401 1.00424 1.21491 0.92142 0.99107 1.01656 1.19175 0.92847 0.91310 0.85925 0.94900 1.21813 0.92713 1.38585 1.05600 0.92966 1.24928 0.97910 0.94920 0.95680 1.69868 1.34927 1.38020 1.09356 0.86718 0.86036 0.78167 0.77417 1.20417 1.21195 1.20282 1.60932 1.55116 1.04778 1.10249 1.20768 0.99163 0.90478 0.92352 1.19966 0.92882 0.95397 0.96148 1.20797 0.95120 0.98974 0.97046 1.21313 0.99176 1.02310 0.94360 1.17965 0.90276 1.02780 0.87345 1.86656 1.20840 1.77402 1.38161 1.23325 0.77384 0.76364 0.90970 1.93101 1.84179 1.43847 1.97047 1.93091 1.88433 1.73762 1.63052 1.18095 0.86756 0.98968 0.89372 1.86107 1.16857 1.78894 1.40682 1.23076 0.79160 1.01828 1.02841 1.21050 1.00839 1.03955 0.93219 0.95663 0.94494 0.93257 0.95116 0.89147 0.92770 0.85558 0.90863 0.94357 0.85071 0.84671 0.80592 0.92583 0.92352 0.88355 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.79 37.16 0.36 -2.46 16 2 C -0.11 -2.49 5.45 -26.73 -0.15 -2.64 16 3 C 0.22 5.17 1.97 -68.86 -0.14 5.03 16 4 H 0.03 0.87 7.70 -51.93 -0.40 0.47 16 5 C -0.55 -14.34 8.48 -34.44 -0.29 -14.63 16 6 H 0.05 1.35 7.73 -52.49 -0.41 0.94 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.51 11.29 55.43 0.63 -23.89 16 9 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.87 5.67 -109.22 -0.62 -14.48 16 14 C 0.10 1.84 5.64 -4.97 -0.03 1.82 16 15 C -0.04 -0.69 5.44 -104.61 -0.57 -1.26 16 16 C -0.10 -1.51 9.69 -39.58 -0.38 -1.90 16 17 C -0.15 -2.19 8.26 -39.46 -0.33 -2.51 16 18 C 0.06 0.88 6.50 -39.12 -0.25 0.62 16 19 O -0.31 -4.02 10.22 -34.24 -0.35 -4.37 16 20 C 0.41 3.75 5.98 101.05 0.60 4.35 16 21 F -0.20 -2.17 15.59 2.25 0.04 -2.14 16 22 F -0.20 -2.11 15.58 2.25 0.04 -2.08 16 23 C 0.11 1.70 6.70 -39.12 -0.26 1.44 16 24 O -0.31 -4.34 10.28 -34.22 -0.35 -4.69 16 25 C 0.03 0.26 9.81 101.05 0.99 1.26 16 26 C -0.17 -2.56 8.69 -39.46 -0.34 -2.91 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.97 7.77 -51.92 -0.40 0.57 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 2.38 5.95 -51.93 -0.31 2.08 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.33 6.69 8.45 -39.29 -0.33 6.36 16 34 H 0.07 1.33 7.86 -51.93 -0.41 0.92 16 35 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 36 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 37 H 0.14 1.76 5.10 -52.48 -0.27 1.49 16 38 H 0.18 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 40 H 0.06 0.58 7.68 -51.93 -0.40 0.18 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.14 1.87 6.30 -52.49 -0.33 1.54 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -29.75 354.49 -6.92 -36.67 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.74 Total: 6.04 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -0.87 Total: -12.04 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.01 Total: -38.37 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.70 Total: -9.06 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.07 Total: -4.22 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.75 -6.92 -36.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184085717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.693 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds