Wall clock time and date at job start Tue Mar 31 2020 11:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47312 * 2 1 4 4 H 1.08999 * 109.47080 * 54.92791 * 3 2 1 5 5 C 1.50701 * 109.47411 * 174.92402 * 3 2 1 6 6 H 1.07996 * 120.00337 * 119.99733 * 5 3 2 7 7 C 1.37884 * 119.99924 * 300.00459 * 5 3 2 8 8 N 1.31516 * 119.99478 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99920 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47012 * 59.99819 * 9 7 5 11 11 H 1.48503 * 109.46780 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47130 * 299.99738 * 9 7 5 13 13 N 1.46900 * 109.47156 * 294.92236 * 3 2 1 14 14 C 1.46902 * 110.99761 * 154.12924 * 13 3 2 15 15 C 1.50706 * 109.46914 * 185.62216 * 14 13 3 16 16 C 1.38255 * 119.92433 * 90.00634 * 15 14 13 17 17 C 1.38237 * 120.14287 * 180.02562 * 16 15 14 18 18 C 1.38564 * 120.00136 * 359.97438 * 17 16 15 19 19 O 1.36001 * 120.06860 * 179.97438 * 18 17 16 20 20 C 1.42898 * 117.00456 * 359.97438 * 19 18 17 21 21 F 1.39900 * 109.47156 * 300.00495 * 20 19 18 22 22 F 1.39906 * 109.47021 * 60.00044 * 20 19 18 23 23 C 1.39149 * 119.85335 * 0.02562 * 18 17 16 24 24 O 1.35993 * 120.07053 * 179.97438 * 23 18 17 25 25 C 1.42902 * 117.00031 * 179.97438 * 24 23 18 26 26 C 1.38238 * 119.92688 * 269.72615 * 15 14 13 27 27 H 1.08994 * 109.47414 * 180.50607 * 1 2 3 28 28 H 1.09002 * 109.47109 * 300.50660 * 1 2 3 29 29 H 1.09008 * 109.46929 * 60.50371 * 1 2 3 30 30 H 1.09006 * 109.47289 * 239.99954 * 2 1 3 31 31 H 1.09002 * 109.47003 * 120.00170 * 2 1 3 32 32 H 0.97001 * 119.99139 * 180.02562 * 8 7 5 33 33 H 1.00897 * 111.00511 * 278.08335 * 13 3 2 34 34 H 1.08999 * 109.47535 * 305.62083 * 14 13 3 35 35 H 1.08998 * 109.47016 * 65.62937 * 14 13 3 36 36 H 1.08001 * 119.92513 * 0.02562 * 16 15 14 37 37 H 1.08009 * 119.99830 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47435 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.47298 * 300.00067 * 25 24 23 40 40 H 1.09001 * 109.46768 * 60.00112 * 25 24 23 41 41 H 1.09003 * 109.47199 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.00282 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9819 0.8411 5 6 3.5418 1.4444 0.1257 6 1 4.1481 1.8885 -0.6498 7 6 4.1418 0.8788 1.2309 8 7 3.4034 0.3383 2.1754 9 14 6.0033 0.8805 1.3863 10 1 6.4988 2.2804 1.3860 11 1 6.3945 0.2177 2.6564 12 1 6.5964 0.1453 0.2405 13 7 1.6530 2.0987 -1.2560 14 6 1.5540 3.5539 -1.0809 15 6 1.0235 4.1771 -2.3463 16 6 -0.3391 4.3372 -2.5176 17 6 -0.8306 4.9079 -3.6768 18 6 0.0428 5.3214 -4.6699 19 8 -0.4394 5.8825 -5.8110 20 6 -1.8581 6.0148 -5.9199 21 9 -2.4516 4.7503 -5.8428 22 9 -2.3330 6.8171 -4.8767 23 6 1.4141 5.1603 -4.4974 24 8 2.2752 5.5641 -5.4694 25 6 3.6692 5.3680 -5.2235 26 6 1.9006 4.5928 -3.3306 27 1 -0.3634 -1.0275 0.0091 28 1 -0.3633 0.5217 0.8854 29 1 -0.3633 0.5060 -0.8945 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8256 -0.0592 2.9531 33 1 2.2959 1.8668 -1.9983 34 1 0.8774 3.7753 -0.2555 35 1 2.5408 3.9614 -0.8612 36 1 -1.0208 4.0157 -1.7442 37 1 -1.8955 5.0322 -3.8080 38 1 -2.1078 6.4762 -6.8752 39 1 3.9608 5.9162 -4.3277 40 1 3.8669 4.3057 -5.0799 41 1 4.2432 5.7328 -6.0753 42 1 2.9647 4.4712 -3.1922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184085717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:54 Heat of formation + Delta-G solvation = -180.082267 kcal Electronic energy + Delta-G solvation = -26571.240612 eV Core-core repulsion = 22379.593887 eV Total energy + Delta-G solvation = -4191.646724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -50.26060 -48.26005 -41.54652 -39.34048 -38.76641 -37.45912 -34.53227 -33.20528 -31.36173 -31.16858 -28.75373 -28.00789 -27.13807 -25.52026 -24.21178 -23.48717 -22.33533 -21.38987 -20.15507 -19.14412 -18.83982 -18.80786 -18.16448 -17.37444 -16.86100 -16.74698 -16.53851 -15.99372 -15.65147 -15.43498 -15.39134 -15.03998 -14.82996 -14.77936 -14.58888 -14.46620 -14.13500 -13.98501 -13.46822 -13.30260 -13.15701 -13.07114 -12.87909 -12.79710 -12.72615 -12.53290 -12.32755 -12.11358 -11.97271 -11.93179 -11.50441 -11.34474 -11.01138 -10.45120 -9.80763 -9.09944 -8.94179 -8.04704 -6.26867 0.16515 0.33770 1.40231 1.41087 1.48218 1.65465 2.25866 2.40751 2.58176 2.59466 3.15623 3.53969 3.64137 3.74575 3.77654 3.96993 4.01883 4.12040 4.35468 4.37864 4.38788 4.46759 4.61345 4.72402 4.75487 4.78579 4.88183 4.95109 5.04088 5.15970 5.19510 5.43695 5.48499 5.52217 5.61627 5.65748 5.74780 5.78024 6.10404 6.19941 6.36614 6.39479 6.78769 7.00504 7.44578 8.91900 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.003305 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.171767 B = 8469.093100 C = 9648.669030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.222 3.778 4 H 0.003 0.997 5 C -0.561 4.561 6 H 0.052 0.948 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.673 5.673 14 C 0.110 3.890 15 C -0.056 4.056 16 C -0.105 4.105 17 C -0.154 4.154 18 C 0.056 3.944 19 O -0.322 6.322 20 C 0.404 3.596 21 F -0.211 7.211 22 F -0.210 7.210 23 C 0.105 3.895 24 O -0.323 6.323 25 C 0.018 3.982 26 C -0.171 4.171 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.057 0.943 30 H 0.027 0.973 31 H 0.061 0.939 32 H 0.262 0.738 33 H 0.329 0.671 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.235 0.765 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.125 0.875 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 12.302 -16.743 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.600 4.600 6 H 0.070 0.930 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.302 5.302 14 C -0.019 4.019 15 C -0.057 4.057 16 C -0.124 4.124 17 C -0.172 4.172 18 C 0.013 3.987 19 O -0.240 6.240 20 C 0.315 3.685 21 F -0.192 7.192 22 F -0.192 7.192 23 C 0.059 3.941 24 O -0.237 6.237 25 C -0.076 4.076 26 C -0.190 4.190 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.155 0.845 37 H 0.165 0.835 38 H 0.251 0.749 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.143 0.857 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.058 12.245 -16.765 22.269 hybrid contribution 1.943 -0.168 1.027 2.205 sum -6.114 12.076 -15.738 20.758 Atomic orbital electron populations 1.21564 0.96492 0.99683 1.00551 1.21359 0.94347 0.98383 0.99978 1.18951 0.91736 0.91531 0.86440 0.97895 1.22143 0.93980 1.38269 1.05609 0.92962 1.25656 1.02020 0.94741 0.95509 1.70002 1.36471 1.38710 1.09743 0.85749 0.81105 0.78242 0.77345 1.19910 1.21105 1.19729 1.60849 1.54573 1.06205 1.08541 1.20656 0.98586 0.89046 0.93649 1.19722 0.93507 0.96883 0.95598 1.20894 0.94854 0.99031 0.97610 1.21419 0.99782 1.02046 0.93972 1.18174 0.90513 1.02125 0.87935 1.86657 1.23218 1.76965 1.37207 1.24292 0.75553 0.75987 0.92684 1.93078 1.84164 1.44869 1.97137 1.93073 1.88341 1.73872 1.63905 1.18221 0.87386 0.98968 0.89512 1.86096 1.18309 1.78773 1.40481 1.23350 0.77596 1.02207 1.04462 1.21105 1.01160 1.03666 0.93080 0.93794 0.94951 0.92436 0.95451 0.92016 0.92897 0.85431 0.91391 0.95443 0.84497 0.83525 0.74929 0.92043 0.92288 0.85661 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 9.79 71.98 0.71 -4.37 16 2 C -0.10 -4.87 5.45 30.59 0.17 -4.70 16 3 C 0.22 10.85 1.97 44.17 0.09 10.94 16 4 H 0.00 0.17 7.70 -2.39 -0.02 0.15 16 5 C -0.56 -29.64 8.48 25.60 0.22 -29.42 16 6 H 0.05 2.70 7.73 -2.91 -0.02 2.67 16 7 C 0.02 1.13 5.29 84.66 0.45 1.58 16 8 N -0.91 -51.36 11.29 21.45 0.24 -51.12 16 9 Si 0.95 42.48 29.54 68.60 2.03 44.50 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.67 -27.51 5.67 -499.45 -2.83 -30.34 16 14 C 0.11 4.02 5.64 85.56 0.48 4.50 16 15 C -0.06 -1.78 5.44 -19.86 -0.11 -1.89 16 16 C -0.11 -3.10 9.69 22.27 0.22 -2.89 16 17 C -0.15 -4.22 8.26 22.35 0.18 -4.04 16 18 C 0.06 1.59 6.50 22.57 0.15 1.73 16 19 O -0.32 -7.66 10.22 -79.70 -0.81 -8.47 16 20 C 0.40 6.34 5.98 113.37 0.68 7.02 16 21 F -0.21 -4.15 15.59 44.97 0.70 -3.45 16 22 F -0.21 -3.98 15.58 44.97 0.70 -3.28 16 23 C 0.10 3.03 6.70 22.57 0.15 3.18 16 24 O -0.32 -8.51 10.28 -79.60 -0.82 -9.33 16 25 C 0.02 0.34 9.81 113.37 1.11 1.45 16 26 C -0.17 -5.01 8.69 22.35 0.19 -4.81 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.06 2.21 7.77 -2.38 -0.02 2.19 16 30 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.06 3.32 5.95 -2.39 -0.01 3.31 16 32 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.33 13.41 8.45 -89.70 -0.76 12.65 16 34 H 0.07 2.53 7.86 -2.39 -0.02 2.51 16 35 H 0.03 1.06 8.06 -2.39 -0.02 1.04 16 36 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 37 H 0.15 3.61 5.10 -2.91 -0.01 3.60 16 38 H 0.24 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 1.07 7.65 -2.39 -0.02 1.05 16 40 H 0.06 1.09 7.68 -2.39 -0.02 1.07 16 41 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.14 3.86 6.30 -2.91 -0.02 3.84 16 Total: -1.00 -63.95 354.49 4.18 -59.78 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.29 Total: 23.43 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 4.68 Total: -21.72 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -2.59 Total: -81.46 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -1.63 Total: -17.80 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 1.40 Total: -6.73 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -63.95 4.18 -59.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184085717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.304 kcal (2) G-P(sol) polarization free energy of solvation -63.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds