Wall clock time and date at job start Tue Mar 31 2020 11:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47168 * 2 1 4 4 H 1.09006 * 109.47457 * 185.16069 * 3 2 1 5 5 C 1.50703 * 109.47383 * 305.16653 * 3 2 1 6 6 H 1.08003 * 120.00230 * 119.99844 * 5 3 2 7 7 C 1.37881 * 119.99543 * 299.99761 * 5 3 2 8 8 N 1.31506 * 120.00172 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99619 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47299 * 59.99711 * 9 7 5 11 11 H 1.48493 * 109.46909 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46958 * 300.00082 * 9 7 5 13 13 N 1.46904 * 109.47085 * 65.16500 * 3 2 1 14 14 C 1.46900 * 111.00333 * 85.91922 * 13 3 2 15 15 C 1.50693 * 109.47604 * 174.74090 * 14 13 3 16 16 C 1.38195 * 119.97676 * 260.02515 * 15 14 13 17 17 C 1.38154 * 120.11413 * 179.97438 * 16 15 14 18 18 C 1.38796 * 120.05129 * 0.02562 * 17 16 15 19 19 O 1.35902 * 120.02432 * 180.02562 * 18 17 16 20 20 C 1.42895 * 117.00229 * 359.97438 * 19 18 17 21 21 C 1.38611 * 119.94688 * 359.74030 * 18 17 16 22 22 C 1.38662 * 119.89023 * 0.49116 * 21 18 17 23 23 O 1.35892 * 120.02554 * 179.78703 * 22 21 18 24 24 C 1.42892 * 117.00449 * 359.72493 * 23 22 21 25 25 F 1.39901 * 109.47324 * 59.99485 * 24 23 22 26 26 F 1.39901 * 109.47236 * 299.99838 * 24 23 22 27 27 H 1.08997 * 109.47208 * 174.84588 * 1 2 3 28 28 H 1.08993 * 109.46981 * 294.85210 * 1 2 3 29 29 H 1.09012 * 109.47043 * 54.84844 * 1 2 3 30 30 H 1.08997 * 109.47299 * 240.00362 * 2 1 3 31 31 H 1.09000 * 109.47355 * 120.00068 * 2 1 3 32 32 H 0.97003 * 119.99989 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99633 * 321.96761 * 13 3 2 34 34 H 1.08996 * 109.46722 * 54.73884 * 14 13 3 35 35 H 1.09000 * 109.47067 * 294.74345 * 14 13 3 36 36 H 1.07998 * 119.94165 * 359.97438 * 16 15 14 37 37 H 1.07997 * 119.97022 * 180.02562 * 17 16 15 38 38 H 1.08992 * 109.47644 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47204 * 300.00745 * 20 19 18 40 40 H 1.09005 * 109.46860 * 60.00110 * 20 19 18 41 41 H 1.08001 * 120.05665 * 180.25499 * 21 18 17 42 42 H 1.08995 * 109.47743 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4360 2.1890 -1.1615 6 1 0.8268 3.0629 -0.9837 7 6 1.6610 1.7561 -2.4511 8 7 2.4032 0.6923 -2.6676 9 14 0.9129 2.6818 -3.8909 10 1 1.4084 4.0816 -3.8906 11 1 1.3027 2.0194 -5.1614 12 1 -0.5667 2.6805 -3.7650 13 7 1.6548 2.0981 1.2569 14 6 2.6436 1.8370 2.3115 15 6 2.2847 2.6271 3.5435 16 6 2.9381 3.8136 3.8175 17 6 2.6110 4.5405 4.9459 18 6 1.6251 4.0802 5.8076 19 8 1.3033 4.7959 6.9171 20 6 2.0205 6.0126 7.1349 21 6 0.9648 2.8929 5.5324 22 6 1.2983 2.1627 4.4018 23 8 0.6558 0.9962 4.1317 24 6 -0.3484 0.5788 5.0587 25 9 -1.3507 1.5523 5.1301 26 9 0.2261 0.4075 6.3227 27 1 -0.3633 -1.0235 -0.0923 28 1 -0.3633 0.4319 0.9324 29 1 -0.3634 0.5917 -0.8403 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.5618 0.3880 -3.5749 33 1 0.7323 1.8101 1.5470 34 1 3.6326 2.1353 1.9639 35 1 2.6478 0.7735 2.5504 36 1 3.7058 4.1732 3.1484 37 1 3.1228 5.4676 5.1576 38 1 1.6673 6.4833 8.0523 39 1 3.0849 5.7958 7.2246 40 1 1.8565 6.6864 6.2939 41 1 0.1945 2.5352 6.1996 42 1 -0.7814 -0.3642 4.7252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184090973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:34 Heat of formation + Delta-G solvation = -157.906016 kcal Electronic energy + Delta-G solvation = -27190.935562 eV Core-core repulsion = 23000.250472 eV Total energy + Delta-G solvation = -4190.685090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.40582 -47.39079 -40.45073 -38.96303 -36.96416 -36.05682 -32.86898 -31.22716 -30.52321 -29.33999 -27.58247 -26.34222 -26.07768 -24.04522 -23.09298 -22.53224 -21.18328 -19.30589 -19.12262 -18.29111 -17.96211 -17.20451 -16.42784 -16.10318 -15.86049 -15.54655 -14.90890 -14.83897 -14.51973 -14.31267 -14.05573 -13.92582 -13.71273 -13.55261 -13.32726 -12.93336 -12.74008 -12.64268 -12.41892 -12.22500 -12.11532 -11.92856 -11.51139 -11.36439 -10.89325 -10.84967 -10.74299 -10.61986 -10.47315 -9.93189 -9.74906 -9.50989 -8.94696 -8.63893 -8.30015 -7.99118 -7.11807 -5.93252 -3.94439 1.34186 1.45973 2.53890 3.10544 3.36956 3.41038 3.44207 3.44696 3.72751 4.25619 4.48408 4.57529 4.76218 4.91999 4.98288 4.99557 5.08648 5.27982 5.31827 5.38202 5.41714 5.61478 5.69292 5.95271 6.15798 6.29515 6.33740 6.41208 6.42549 6.48870 6.62086 6.73718 6.95226 6.98059 7.32602 7.33540 7.35053 7.57263 7.75484 7.93904 8.33781 8.62647 8.68224 9.11237 9.68930 11.13606 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015497 B = 0.003835 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.399979 B = 7299.379737 C = 8339.061676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.144 4.144 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.105 3.895 15 C -0.110 4.110 16 C -0.033 4.033 17 C -0.230 4.230 18 C 0.151 3.849 19 O -0.318 6.318 20 C 0.028 3.972 21 C -0.226 4.226 22 C 0.146 3.854 23 O -0.308 6.308 24 C 0.410 3.590 25 F -0.197 7.197 26 F -0.201 7.201 27 H 0.022 0.978 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.011 0.989 32 H 0.259 0.741 33 H 0.329 0.671 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.138 0.862 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 3.019 18.754 19.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.309 5.309 14 C -0.024 4.024 15 C -0.111 4.111 16 C -0.051 4.051 17 C -0.249 4.249 18 C 0.105 3.895 19 O -0.231 6.231 20 C -0.067 4.067 21 C -0.245 4.245 22 C 0.102 3.898 23 O -0.225 6.225 24 C 0.320 3.680 25 F -0.179 7.179 26 F -0.183 7.183 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.147 0.853 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.155 0.845 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.435 3.372 18.436 18.796 hybrid contribution -0.580 -0.201 -0.367 0.715 sum -2.015 3.171 18.068 18.455 Atomic orbital electron populations 1.21588 0.97761 0.98517 1.00778 1.22086 0.94983 1.01130 1.00165 1.19229 0.95913 0.88621 0.85478 0.94997 1.21039 1.30425 1.11431 0.89657 0.92128 1.24901 0.95597 0.95176 0.98661 1.69871 1.39067 1.24039 1.20699 0.86644 0.79564 0.79999 0.81668 1.20393 1.21566 1.20421 1.60888 1.03804 1.63070 1.03108 1.20682 0.97543 0.95512 0.88673 1.19382 0.97057 0.97449 0.97257 1.20714 0.97704 0.91814 0.94909 1.21177 1.02427 1.03160 0.98139 1.18530 0.93530 0.91040 0.86369 1.86040 1.61008 1.35303 1.40798 1.23047 0.96690 0.84591 1.02360 1.20544 1.06472 0.97181 1.00302 1.18347 0.92925 0.84804 0.93687 1.86714 1.49719 1.37971 1.48090 1.23386 0.77857 0.91122 0.75680 1.93102 1.61762 1.67158 1.95905 1.93087 1.85296 1.95699 1.44207 0.95899 0.95353 0.91330 0.89029 0.97020 0.93130 0.85268 0.90821 0.95131 0.84496 0.85297 0.88411 0.92607 0.92470 0.84458 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.40 37.16 0.35 -2.41 16 2 C -0.14 -3.36 5.51 -26.73 -0.15 -3.51 16 3 C 0.22 5.29 2.33 -68.86 -0.16 5.13 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.49 -13.15 7.25 -34.44 -0.25 -13.40 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -25.20 11.38 55.43 0.63 -24.57 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 N -0.68 -14.52 6.19 -109.22 -0.68 -15.20 16 14 C 0.11 1.94 5.30 -4.98 -0.03 1.91 16 15 C -0.11 -1.81 5.45 -104.45 -0.57 -2.38 16 16 C -0.03 -0.47 9.66 -39.63 -0.38 -0.86 16 17 C -0.23 -3.00 9.04 -39.41 -0.36 -3.36 16 18 C 0.15 2.14 6.68 -39.24 -0.26 1.87 16 19 O -0.32 -4.06 10.49 -19.43 -0.20 -4.26 16 20 C 0.03 0.23 9.81 101.05 0.99 1.22 16 21 C -0.23 -3.41 8.19 -39.29 -0.32 -3.73 16 22 C 0.15 2.32 6.45 -39.23 -0.25 2.07 16 23 O -0.31 -4.53 9.62 -19.40 -0.19 -4.71 16 24 C 0.41 4.55 5.98 101.05 0.60 5.16 16 25 F -0.20 -2.50 15.56 2.25 0.04 -2.47 16 26 F -0.20 -2.40 15.60 2.25 0.04 -2.36 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.03 0.55 6.63 -51.93 -0.34 0.20 16 29 H 0.07 1.62 6.86 -51.92 -0.36 1.26 16 30 H 0.09 2.40 6.23 -51.93 -0.32 2.07 16 31 H 0.01 0.24 7.50 -51.93 -0.39 -0.15 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.33 6.97 6.65 -39.29 -0.26 6.71 16 34 H 0.07 1.34 7.78 -51.93 -0.40 0.93 16 35 H 0.03 0.57 7.25 -51.93 -0.38 0.19 16 36 H 0.14 1.77 8.03 -52.49 -0.42 1.35 16 37 H 0.13 1.31 6.29 -52.49 -0.33 0.98 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 40 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 41 H 0.14 2.01 5.10 -52.49 -0.27 1.74 16 42 H 0.18 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -30.60 347.94 -6.51 -37.10 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.48 Total: 5.69 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.88 Total: -10.81 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.05 Total: -39.76 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.39 Total: -8.98 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.07 Total: -4.83 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.60 -6.51 -37.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184090973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.804 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds