Wall clock time and date at job start Tue Mar 31 2020 11:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47168 * 2 1 4 4 H 1.09006 * 109.47457 * 185.16069 * 3 2 1 5 5 C 1.50703 * 109.47383 * 305.16653 * 3 2 1 6 6 H 1.08003 * 120.00230 * 119.99844 * 5 3 2 7 7 C 1.37881 * 119.99543 * 299.99761 * 5 3 2 8 8 N 1.31506 * 120.00172 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99619 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47299 * 59.99711 * 9 7 5 11 11 H 1.48493 * 109.46909 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46958 * 300.00082 * 9 7 5 13 13 N 1.46904 * 109.47085 * 65.16500 * 3 2 1 14 14 C 1.46900 * 111.00333 * 85.91922 * 13 3 2 15 15 C 1.50693 * 109.47604 * 174.74090 * 14 13 3 16 16 C 1.38195 * 119.97676 * 260.02515 * 15 14 13 17 17 C 1.38154 * 120.11413 * 179.97438 * 16 15 14 18 18 C 1.38796 * 120.05129 * 0.02562 * 17 16 15 19 19 O 1.35902 * 120.02432 * 180.02562 * 18 17 16 20 20 C 1.42895 * 117.00229 * 359.97438 * 19 18 17 21 21 C 1.38611 * 119.94688 * 359.74030 * 18 17 16 22 22 C 1.38662 * 119.89023 * 0.49116 * 21 18 17 23 23 O 1.35892 * 120.02554 * 179.78703 * 22 21 18 24 24 C 1.42892 * 117.00449 * 359.72493 * 23 22 21 25 25 F 1.39901 * 109.47324 * 59.99485 * 24 23 22 26 26 F 1.39901 * 109.47236 * 299.99838 * 24 23 22 27 27 H 1.08997 * 109.47208 * 174.84588 * 1 2 3 28 28 H 1.08993 * 109.46981 * 294.85210 * 1 2 3 29 29 H 1.09012 * 109.47043 * 54.84844 * 1 2 3 30 30 H 1.08997 * 109.47299 * 240.00362 * 2 1 3 31 31 H 1.09000 * 109.47355 * 120.00068 * 2 1 3 32 32 H 0.97003 * 119.99989 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99633 * 321.96761 * 13 3 2 34 34 H 1.08996 * 109.46722 * 54.73884 * 14 13 3 35 35 H 1.09000 * 109.47067 * 294.74345 * 14 13 3 36 36 H 1.07998 * 119.94165 * 359.97438 * 16 15 14 37 37 H 1.07997 * 119.97022 * 180.02562 * 17 16 15 38 38 H 1.08992 * 109.47644 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47204 * 300.00745 * 20 19 18 40 40 H 1.09005 * 109.46860 * 60.00110 * 20 19 18 41 41 H 1.08001 * 120.05665 * 180.25499 * 21 18 17 42 42 H 1.08995 * 109.47743 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4360 2.1890 -1.1615 6 1 0.8268 3.0629 -0.9837 7 6 1.6610 1.7561 -2.4511 8 7 2.4032 0.6923 -2.6676 9 14 0.9129 2.6818 -3.8909 10 1 1.4084 4.0816 -3.8906 11 1 1.3027 2.0194 -5.1614 12 1 -0.5667 2.6805 -3.7650 13 7 1.6548 2.0981 1.2569 14 6 2.6436 1.8370 2.3115 15 6 2.2847 2.6271 3.5435 16 6 2.9381 3.8136 3.8175 17 6 2.6110 4.5405 4.9459 18 6 1.6251 4.0802 5.8076 19 8 1.3033 4.7959 6.9171 20 6 2.0205 6.0126 7.1349 21 6 0.9648 2.8929 5.5324 22 6 1.2983 2.1627 4.4018 23 8 0.6558 0.9962 4.1317 24 6 -0.3484 0.5788 5.0587 25 9 -1.3507 1.5523 5.1301 26 9 0.2261 0.4075 6.3227 27 1 -0.3633 -1.0235 -0.0923 28 1 -0.3633 0.4319 0.9324 29 1 -0.3634 0.5917 -0.8403 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.5618 0.3880 -3.5749 33 1 0.7323 1.8101 1.5470 34 1 3.6326 2.1353 1.9639 35 1 2.6478 0.7735 2.5504 36 1 3.7058 4.1732 3.1484 37 1 3.1228 5.4676 5.1576 38 1 1.6673 6.4833 8.0523 39 1 3.0849 5.7958 7.2246 40 1 1.8565 6.6864 6.2939 41 1 0.1945 2.5352 6.1996 42 1 -0.7814 -0.3642 4.7252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184090973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:33 Heat of formation + Delta-G solvation = -177.397667 kcal Electronic energy + Delta-G solvation = -27191.780783 eV Core-core repulsion = 23000.250472 eV Total energy + Delta-G solvation = -4191.530311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.31535 -48.30870 -41.51650 -39.96357 -38.41479 -37.45791 -34.61690 -32.92952 -31.67605 -30.72579 -28.62342 -27.91265 -27.07907 -25.61263 -24.85265 -23.60040 -22.35755 -21.14556 -20.16099 -19.24786 -18.89257 -18.22288 -18.10911 -17.31447 -16.83465 -16.73218 -16.60389 -16.26422 -15.83462 -15.49305 -15.14976 -15.09635 -14.92489 -14.65325 -14.58826 -14.45638 -14.24473 -13.84722 -13.70470 -13.61492 -13.14064 -13.09324 -12.94881 -12.75803 -12.72191 -12.41463 -12.36072 -11.89669 -11.80064 -11.77410 -11.54201 -11.36812 -10.93616 -10.38779 -9.73819 -9.15059 -8.82220 -8.01142 -6.09295 0.24509 0.31896 1.46349 1.46846 1.54454 1.61038 2.23186 2.48135 2.58143 2.61358 3.27212 3.53294 3.67937 3.70346 3.78699 3.99689 4.04564 4.15845 4.30503 4.41900 4.45251 4.47401 4.59367 4.59917 4.68767 4.76164 4.77029 4.88251 5.03278 5.16224 5.24760 5.37365 5.40786 5.48077 5.56277 5.74534 5.78364 5.86986 5.91754 6.36164 6.37586 6.74128 6.88158 7.02993 7.58120 9.03684 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015497 B = 0.003835 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.399979 B = 7299.379737 C = 8339.061676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.000 1.000 5 C -0.498 4.498 6 H 0.050 0.950 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.679 5.679 14 C 0.114 3.886 15 C -0.136 4.136 16 C -0.035 4.035 17 C -0.224 4.224 18 C 0.151 3.849 19 O -0.332 6.332 20 C 0.016 3.984 21 C -0.241 4.241 22 C 0.142 3.858 23 O -0.324 6.324 24 C 0.405 3.595 25 F -0.208 7.208 26 F -0.207 7.207 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.259 0.741 33 H 0.331 0.669 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.137 0.863 42 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 3.926 19.884 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.176 4.176 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.537 4.537 6 H 0.068 0.932 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.310 5.310 14 C -0.015 4.015 15 C -0.137 4.137 16 C -0.053 4.053 17 C -0.243 4.243 18 C 0.105 3.895 19 O -0.246 6.246 20 C -0.077 4.077 21 C -0.260 4.260 22 C 0.097 3.903 23 O -0.242 6.242 24 C 0.316 3.684 25 F -0.190 7.190 26 F -0.189 7.189 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.149 0.851 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.166 0.834 37 H 0.178 0.822 38 H 0.140 0.860 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.155 0.845 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.047 4.291 19.592 20.160 hybrid contribution -0.371 -0.422 -0.578 0.806 sum -2.417 3.868 19.014 19.553 Atomic orbital electron populations 1.21457 0.96025 0.99538 1.00614 1.21924 0.96446 0.99954 0.99268 1.18993 0.93744 0.89493 0.86542 0.98207 1.21236 1.30330 1.11282 0.90860 0.93221 1.25553 0.95968 0.95883 1.00875 1.70000 1.39941 1.25085 1.21023 0.85746 0.78990 0.78794 0.78872 1.20191 1.21234 1.19835 1.60777 1.04551 1.62719 1.02980 1.20564 0.96474 0.95748 0.88721 1.19279 0.98855 0.98576 0.97006 1.20929 0.97600 0.91247 0.95571 1.21433 1.01925 1.03889 0.97055 1.18707 0.93171 0.90810 0.86797 1.86037 1.61828 1.36730 1.40003 1.23412 0.97360 0.83070 1.03905 1.20642 1.07064 0.97959 1.00360 1.18421 0.92847 0.85279 0.93711 1.86687 1.50451 1.37572 1.49470 1.24204 0.76917 0.92215 0.75104 1.93076 1.62015 1.67965 1.95914 1.93069 1.85438 1.95666 1.44710 0.93794 0.93522 0.93830 0.92003 0.95686 0.93236 0.85070 0.91275 0.95589 0.83374 0.82197 0.86046 0.91228 0.91598 0.84496 0.75447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.40 71.98 0.68 -4.30 16 2 C -0.14 -6.39 5.51 30.59 0.17 -6.22 16 3 C 0.22 11.06 2.33 44.17 0.10 11.16 16 4 H 0.00 0.00 7.70 -2.38 -0.02 -0.02 16 5 C -0.50 -27.27 7.25 25.60 0.19 -27.08 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.02 0.84 5.28 84.66 0.45 1.29 16 8 N -0.92 -52.45 11.38 21.45 0.24 -52.21 16 9 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.68 -29.30 6.19 -499.46 -3.09 -32.39 16 14 C 0.11 4.23 5.30 85.55 0.45 4.68 16 15 C -0.14 -4.41 5.45 -19.75 -0.11 -4.52 16 16 C -0.03 -0.97 9.66 22.24 0.21 -0.76 16 17 C -0.22 -5.39 9.04 22.38 0.20 -5.19 16 18 C 0.15 4.05 6.68 22.49 0.15 4.20 16 19 O -0.33 -7.82 10.49 -92.44 -0.97 -8.79 16 20 C 0.02 0.22 9.81 113.37 1.11 1.33 16 21 C -0.24 -7.11 8.19 22.46 0.18 -6.92 16 22 C 0.14 4.42 6.45 22.49 0.15 4.57 16 23 O -0.32 -9.28 9.62 -92.33 -0.89 -10.17 16 24 C 0.40 8.41 5.98 113.37 0.68 9.09 16 25 F -0.21 -5.05 15.56 44.97 0.70 -4.35 16 26 F -0.21 -4.72 15.60 44.97 0.70 -4.02 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.75 6.63 -2.39 -0.02 1.74 16 29 H 0.04 2.03 6.86 -2.38 -0.02 2.01 16 30 H 0.06 3.29 6.23 -2.39 -0.01 3.27 16 31 H 0.02 1.07 7.50 -2.39 -0.02 1.05 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.33 13.94 6.65 -89.69 -0.60 13.35 16 34 H 0.07 2.57 7.78 -2.39 -0.02 2.55 16 35 H 0.03 0.98 7.25 -2.39 -0.02 0.96 16 36 H 0.15 3.66 8.03 -2.91 -0.02 3.64 16 37 H 0.16 2.73 6.29 -2.91 -0.02 2.71 16 38 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 40 H 0.07 0.79 7.66 -2.38 -0.02 0.77 16 41 H 0.14 3.95 5.10 -2.91 -0.01 3.93 16 42 H 0.23 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -66.50 347.94 3.79 -62.71 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.46 Total: 21.95 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 4.61 Total: -18.67 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -2.85 Total: -84.60 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -1.86 Total: -18.96 kcal Atomic # 9 Polarization: -9.77 SS G_CDS: 1.40 Total: -8.37 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.50 3.79 -62.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184090973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.688 kcal (2) G-P(sol) polarization free energy of solvation -66.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds