Wall clock time and date at job start Tue Mar 31 2020 11:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46654 * 2 1 4 4 H 1.08993 * 109.47253 * 305.00159 * 3 2 1 5 5 C 1.50705 * 109.46738 * 185.00336 * 3 2 1 6 6 H 1.08004 * 119.99903 * 239.99975 * 5 3 2 7 7 C 1.37875 * 119.99931 * 60.00250 * 5 3 2 8 8 N 1.31509 * 120.00409 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99826 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46842 * 59.99767 * 9 7 5 11 11 H 1.48495 * 109.47106 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47080 * 299.99734 * 9 7 5 13 13 N 1.46499 * 109.47253 * 65.00645 * 3 2 1 14 14 C 1.34781 * 119.99823 * 274.99848 * 13 3 2 15 15 O 1.21588 * 119.99882 * 359.97438 * 14 13 3 16 16 N 1.34771 * 120.00134 * 180.02562 * 14 13 3 17 17 C 1.39735 * 120.00333 * 174.68219 * 16 14 13 18 18 C 1.39041 * 119.92180 * 326.38964 * 17 16 14 19 19 C 1.37779 * 120.06790 * 179.72041 * 18 17 16 20 20 C 1.39647 * 119.92992 * 0.53036 * 19 18 17 21 21 C 1.47729 * 120.07771 * 179.72772 * 20 19 18 22 22 N 1.31270 * 125.73348 * 179.71366 * 21 20 19 23 23 C 1.34205 * 108.63455 * 179.83077 * 22 21 20 24 24 C 1.34499 * 107.84915 * 0.42432 * 23 22 21 25 25 O 1.34442 * 125.73100 * 0.02562 * 21 20 19 26 26 C 1.39662 * 119.84982 * 359.74318 * 20 19 18 27 27 C 1.37767 * 119.92460 * 0.02562 * 26 20 19 28 28 H 1.09005 * 109.46881 * 299.99255 * 1 2 3 29 29 H 1.08994 * 109.47358 * 59.99676 * 1 2 3 30 30 H 1.09006 * 109.46754 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47113 * 240.00257 * 2 1 3 32 32 H 1.08995 * 109.47341 * 119.99773 * 2 1 3 33 33 H 0.96998 * 120.00363 * 180.02562 * 8 7 5 34 34 H 0.96993 * 120.00606 * 94.99641 * 13 3 2 35 35 H 0.97005 * 119.99668 * 354.68121 * 16 14 13 36 36 H 1.08001 * 119.96385 * 359.97438 * 18 17 16 37 37 H 1.08007 * 120.03067 * 180.27928 * 19 18 17 38 38 H 1.08003 * 126.07459 * 180.20583 * 23 22 21 39 39 H 1.08006 * 126.35543 * 179.75909 * 24 23 22 40 40 H 1.08004 * 120.03711 * 179.97438 * 26 20 19 41 41 H 1.08000 * 119.96077 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1431 0.8786 -1.2281 8 7 3.4061 0.3368 -2.1730 9 14 6.0048 0.8815 -1.3820 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2170 -2.6506 12 1 6.4993 2.2818 -1.3824 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6644 1.3671 15 8 -0.3413 2.6326 0.4319 16 7 0.0787 3.2673 2.5185 17 6 -1.1371 3.9508 2.6022 18 6 -1.6372 4.6155 1.4880 19 6 -2.8386 5.2856 1.5655 20 6 -3.5487 5.3060 2.7678 21 6 -4.8342 6.0285 2.8562 22 7 -5.5931 6.1152 3.9238 23 6 -6.6735 6.8524 3.6232 24 6 -6.5765 7.2190 2.3328 25 8 -5.4263 6.7028 1.8551 26 6 -3.0407 4.6421 3.8866 27 6 -1.8412 3.9700 3.8009 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8292 -0.0616 -2.9496 34 1 2.2719 2.1232 1.9978 35 1 0.6664 3.2268 3.2893 36 1 -1.0853 4.6031 0.5598 37 1 -3.2287 5.7979 0.6984 38 1 -7.4795 7.1035 4.2968 39 1 -7.2880 7.8160 1.7816 40 1 -3.5872 4.6563 4.8180 41 1 -1.4480 3.4560 4.6656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184584408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:04 Heat of formation + Delta-G solvation = 23.083822 kcal Electronic energy + Delta-G solvation = -25048.319820 eV Core-core repulsion = 21316.172225 eV Total energy + Delta-G solvation = -3732.147595 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.38700 -40.34344 -38.57831 -35.61939 -34.90015 -34.35917 -32.54614 -31.49283 -31.02444 -30.60311 -28.41653 -26.86609 -23.97430 -23.37861 -22.93158 -22.11591 -21.39544 -20.49545 -19.57422 -18.25561 -18.17099 -17.47977 -16.73202 -16.12103 -15.98177 -15.55920 -15.09386 -14.77925 -14.44933 -14.23828 -13.90697 -13.55929 -13.36049 -13.24784 -13.05501 -12.69688 -12.38620 -12.19393 -11.63795 -11.54296 -11.30388 -11.27633 -11.02285 -10.87203 -10.75019 -10.44036 -10.35350 -10.21958 -9.68218 -9.49730 -9.20530 -9.10013 -8.96417 -8.54858 -8.01087 -7.69709 -6.16452 -4.26243 0.57813 1.39068 1.69516 2.51935 2.61482 3.07263 3.22824 3.28747 3.30293 3.59755 3.84559 3.97380 4.28484 4.68158 4.77818 4.81734 4.93911 4.97653 5.15268 5.28091 5.39958 5.45624 5.55832 5.69586 5.94338 6.04369 6.23060 6.31484 6.38008 6.39614 6.44975 6.55046 6.63975 6.95769 7.02113 7.10024 7.29115 7.32372 7.39386 7.53578 7.59962 7.81176 7.91383 8.14078 8.66369 8.77527 9.15725 9.41680 10.88796 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032493 B = 0.002374 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.518387 B =11790.205137 C =11879.070112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.716 5.716 14 C 0.691 3.309 15 O -0.572 6.572 16 N -0.696 5.696 17 C 0.212 3.788 18 C -0.126 4.126 19 C -0.062 4.062 20 C -0.063 4.063 21 C 0.253 3.747 22 N -0.485 5.485 23 C -0.039 4.039 24 C -0.084 4.084 25 O -0.198 6.198 26 C -0.044 4.044 27 C -0.163 4.163 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.021 0.979 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.266 0.734 34 H 0.386 0.614 35 H 0.405 0.595 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.184 0.816 39 H 0.215 0.785 40 H 0.138 0.862 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.735 10.661 11.671 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.367 5.367 14 C 0.391 3.609 15 O -0.449 6.449 16 N -0.343 5.343 17 C 0.114 3.886 18 C -0.146 4.146 19 C -0.082 4.082 20 C -0.065 4.065 21 C 0.050 3.950 22 N -0.214 5.214 23 C -0.179 4.179 24 C -0.154 4.154 25 O -0.085 6.085 26 C -0.064 4.064 27 C -0.184 4.184 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.219 0.781 35 H 0.240 0.760 36 H 0.166 0.834 37 H 0.149 0.851 38 H 0.201 0.799 39 H 0.232 0.768 40 H 0.156 0.844 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.146 10.173 11.054 20.635 hybrid contribution 1.114 0.316 0.012 1.158 sum -13.032 10.489 11.067 20.058 Atomic orbital electron populations 1.21819 0.98229 0.97989 1.01267 1.21967 0.92703 0.99832 1.02296 1.18747 0.94061 0.88928 0.79812 0.93132 1.21168 0.90573 1.39325 1.06383 0.92121 1.24872 0.98640 0.94751 0.95347 1.69877 1.35272 1.37337 1.09336 0.86501 0.84753 0.78317 0.77480 1.20171 1.21115 1.20180 1.45872 1.12873 1.58582 1.19367 1.16129 0.83702 0.78806 0.82221 1.90923 1.51617 1.64256 1.38081 1.42975 1.20097 1.55855 1.15380 1.17764 0.85912 0.90579 0.94365 1.21203 0.96992 0.96696 0.99745 1.21073 0.93864 0.97186 0.96101 1.17171 0.90030 1.03310 0.96016 1.23970 0.95359 0.94877 0.80828 1.70691 1.04419 1.19003 1.27295 1.23349 0.98719 1.00309 0.95513 1.25083 0.89295 1.04542 0.96514 1.84540 1.30485 1.53100 1.40330 1.20815 0.94316 0.93899 0.97399 1.20770 0.95583 1.04199 0.97850 0.94345 0.93104 0.95942 0.88210 0.95061 0.92425 0.78136 0.76029 0.83436 0.85114 0.79892 0.76842 0.84442 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.29 6.90 2.24 -69.08 -0.15 6.74 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.62 8.73 -34.44 -0.30 -13.92 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.08 11.29 55.43 0.63 -23.45 16 9 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.72 -13.87 5.03 -59.81 -0.30 -14.17 16 14 C 0.69 12.88 6.86 -86.92 -0.60 12.28 16 15 O -0.57 -12.59 11.17 5.29 0.06 -12.53 16 16 N -0.70 -9.75 5.34 -14.19 -0.08 -9.83 16 17 C 0.21 2.94 6.28 -83.66 -0.53 2.42 16 18 C -0.13 -1.87 8.63 -39.45 -0.34 -2.21 16 19 C -0.06 -0.82 9.70 -39.22 -0.38 -1.20 16 20 C -0.06 -0.81 5.87 -104.96 -0.62 -1.43 16 21 C 0.25 3.29 7.89 -13.92 -0.11 3.18 16 22 N -0.49 -6.17 10.91 -11.74 -0.13 -6.30 16 23 C -0.04 -0.37 11.87 -17.84 -0.21 -0.59 16 24 C -0.08 -0.72 12.17 29.41 0.36 -0.36 16 25 O -0.20 -2.35 10.52 3.91 0.04 -2.31 16 26 C -0.04 -0.52 9.68 -39.22 -0.38 -0.90 16 27 C -0.16 -1.86 9.94 -39.46 -0.39 -2.26 16 28 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 29 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.39 6.36 8.56 -40.82 -0.35 6.01 16 35 H 0.40 4.23 8.83 -40.82 -0.36 3.87 16 36 H 0.15 2.49 6.42 -52.49 -0.34 2.16 16 37 H 0.13 1.55 7.90 -52.48 -0.41 1.14 16 38 H 0.18 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.22 0.86 8.06 -52.48 -0.42 0.43 16 40 H 0.14 1.45 7.83 -52.48 -0.41 1.04 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 347.28 15.07 5.23 5.23 Total: -1.00 -31.31 347.28 -8.07 -39.38 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -4.93 Total: 11.36 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.57 Total: -2.46 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.12 Total: -53.75 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.10 Total: -14.84 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.31 -8.07 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184584408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.464 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds