Wall clock time and date at job start Tue Mar 31 2020 11:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46654 * 2 1 4 4 H 1.08993 * 109.47253 * 305.00159 * 3 2 1 5 5 C 1.50705 * 109.46738 * 185.00336 * 3 2 1 6 6 H 1.08004 * 119.99903 * 239.99975 * 5 3 2 7 7 C 1.37875 * 119.99931 * 60.00250 * 5 3 2 8 8 N 1.31509 * 120.00409 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99826 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46842 * 59.99767 * 9 7 5 11 11 H 1.48495 * 109.47106 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47080 * 299.99734 * 9 7 5 13 13 N 1.46499 * 109.47253 * 65.00645 * 3 2 1 14 14 C 1.34781 * 119.99823 * 274.99848 * 13 3 2 15 15 O 1.21588 * 119.99882 * 359.97438 * 14 13 3 16 16 N 1.34771 * 120.00134 * 180.02562 * 14 13 3 17 17 C 1.39735 * 120.00333 * 174.68219 * 16 14 13 18 18 C 1.39041 * 119.92180 * 326.38964 * 17 16 14 19 19 C 1.37779 * 120.06790 * 179.72041 * 18 17 16 20 20 C 1.39647 * 119.92992 * 0.53036 * 19 18 17 21 21 C 1.47729 * 120.07771 * 179.72772 * 20 19 18 22 22 N 1.31270 * 125.73348 * 179.71366 * 21 20 19 23 23 C 1.34205 * 108.63455 * 179.83077 * 22 21 20 24 24 C 1.34499 * 107.84915 * 0.42432 * 23 22 21 25 25 O 1.34442 * 125.73100 * 0.02562 * 21 20 19 26 26 C 1.39662 * 119.84982 * 359.74318 * 20 19 18 27 27 C 1.37767 * 119.92460 * 0.02562 * 26 20 19 28 28 H 1.09005 * 109.46881 * 299.99255 * 1 2 3 29 29 H 1.08994 * 109.47358 * 59.99676 * 1 2 3 30 30 H 1.09006 * 109.46754 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47113 * 240.00257 * 2 1 3 32 32 H 1.08995 * 109.47341 * 119.99773 * 2 1 3 33 33 H 0.96998 * 120.00363 * 180.02562 * 8 7 5 34 34 H 0.96993 * 120.00606 * 94.99641 * 13 3 2 35 35 H 0.97005 * 119.99668 * 354.68121 * 16 14 13 36 36 H 1.08001 * 119.96385 * 359.97438 * 18 17 16 37 37 H 1.08007 * 120.03067 * 180.27928 * 19 18 17 38 38 H 1.08003 * 126.07459 * 180.20583 * 23 22 21 39 39 H 1.08006 * 126.35543 * 179.75909 * 24 23 22 40 40 H 1.08004 * 120.03711 * 179.97438 * 26 20 19 41 41 H 1.08000 * 119.96077 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1431 0.8786 -1.2281 8 7 3.4061 0.3368 -2.1730 9 14 6.0048 0.8815 -1.3820 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2170 -2.6506 12 1 6.4993 2.2818 -1.3824 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6644 1.3671 15 8 -0.3413 2.6326 0.4319 16 7 0.0787 3.2673 2.5185 17 6 -1.1371 3.9508 2.6022 18 6 -1.6372 4.6155 1.4880 19 6 -2.8386 5.2856 1.5655 20 6 -3.5487 5.3060 2.7678 21 6 -4.8342 6.0285 2.8562 22 7 -5.5931 6.1152 3.9238 23 6 -6.6735 6.8524 3.6232 24 6 -6.5765 7.2190 2.3328 25 8 -5.4263 6.7028 1.8551 26 6 -3.0407 4.6421 3.8866 27 6 -1.8412 3.9700 3.8009 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8292 -0.0616 -2.9496 34 1 2.2719 2.1232 1.9978 35 1 0.6664 3.2268 3.2893 36 1 -1.0853 4.6031 0.5598 37 1 -3.2287 5.7979 0.6984 38 1 -7.4795 7.1035 4.2968 39 1 -7.2880 7.8160 1.7816 40 1 -3.5872 4.6563 4.8180 41 1 -1.4480 3.4560 4.6656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184584408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:03 Heat of formation + Delta-G solvation = 0.646887 kcal Electronic energy + Delta-G solvation = -25049.292759 eV Core-core repulsion = 21316.172225 eV Total energy + Delta-G solvation = -3733.120534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.20855 -41.66157 -39.81293 -37.23127 -35.88855 -35.64753 -34.33529 -32.96372 -32.03594 -31.92611 -29.53077 -28.59774 -25.33494 -24.57221 -24.25322 -23.06169 -22.54287 -21.78604 -21.31837 -19.75876 -19.07077 -18.69595 -17.83557 -17.58590 -17.13794 -16.78114 -16.64804 -16.00383 -15.91955 -15.36229 -15.09350 -14.91058 -14.53073 -14.44099 -14.27950 -14.06565 -13.76864 -13.49060 -13.32978 -13.14483 -12.88151 -12.64448 -12.50106 -12.31389 -12.15710 -12.04749 -11.66960 -11.61304 -11.47236 -11.09490 -10.99698 -10.51645 -10.15131 -9.99998 -9.65003 -8.78223 -8.14304 -6.31252 -0.38044 0.39156 0.84241 1.46751 1.48278 1.55740 1.70349 1.74338 1.82301 2.24660 2.43730 2.85488 3.03315 3.15417 3.45631 3.85326 3.95456 4.10737 4.16292 4.30209 4.45011 4.52035 4.55358 4.59575 4.65940 4.77631 4.92401 5.00120 5.08500 5.17351 5.22459 5.29896 5.32273 5.41699 5.45727 5.49314 5.56685 5.62755 5.77624 5.88301 5.95378 6.18741 6.28411 6.70887 6.76635 7.25644 7.37013 7.71699 8.90810 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032493 B = 0.002374 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.518387 B =11790.205137 C =11879.070112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.296 3.704 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.713 5.713 14 C 0.692 3.308 15 O -0.609 6.609 16 N -0.676 5.676 17 C 0.190 3.810 18 C -0.142 4.142 19 C -0.068 4.068 20 C -0.061 4.061 21 C 0.221 3.779 22 N -0.498 5.498 23 C -0.057 4.057 24 C -0.068 4.068 25 O -0.213 6.213 26 C -0.044 4.044 27 C -0.142 4.142 28 H 0.042 0.958 29 H 0.025 0.975 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.424 0.576 36 H 0.118 0.882 37 H 0.135 0.865 38 H 0.216 0.784 39 H 0.259 0.741 40 H 0.154 0.846 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 11.389 14.196 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.365 5.365 14 C 0.393 3.607 15 O -0.489 6.489 16 N -0.325 5.325 17 C 0.093 3.907 18 C -0.163 4.163 19 C -0.088 4.088 20 C -0.064 4.064 21 C 0.019 3.981 22 N -0.229 5.229 23 C -0.196 4.196 24 C -0.138 4.138 25 O -0.099 6.099 26 C -0.064 4.064 27 C -0.162 4.162 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.263 0.737 36 H 0.136 0.864 37 H 0.153 0.847 38 H 0.232 0.768 39 H 0.275 0.725 40 H 0.172 0.828 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.797 10.934 13.652 22.910 hybrid contribution 1.088 0.234 -0.737 1.334 sum -13.709 11.168 12.916 21.897 Atomic orbital electron populations 1.21642 0.97072 0.98863 1.00192 1.21811 0.93609 0.99317 1.01331 1.18276 0.93428 0.88810 0.80221 0.98135 1.21531 0.91330 1.38962 1.06708 0.90902 1.25738 1.03151 0.94445 0.95070 1.70036 1.37083 1.38255 1.09861 0.85443 0.79275 0.78379 0.77494 1.18922 1.21399 1.19740 1.45448 1.13741 1.58822 1.18523 1.16184 0.82983 0.78638 0.82936 1.90910 1.52602 1.65477 1.39906 1.42562 1.20585 1.54902 1.14458 1.17910 0.86253 0.91451 0.95131 1.21048 0.97727 0.98294 0.99263 1.21059 0.93521 0.97402 0.96839 1.17346 0.90147 1.02857 0.96014 1.23938 0.96007 0.96685 0.81499 1.70646 1.05355 1.19418 1.27445 1.23960 0.98797 1.00166 0.96675 1.26051 0.88211 1.02862 0.96650 1.84545 1.31640 1.53174 1.40586 1.21048 0.94402 0.93352 0.97601 1.21027 0.94681 1.02913 0.97622 0.93934 0.95604 0.93927 0.90979 0.93981 0.92613 0.76209 0.73720 0.86375 0.84710 0.76773 0.72491 0.82830 0.81528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.98 0.61 -4.78 16 2 C -0.12 -5.86 5.45 30.60 0.17 -5.69 16 3 C 0.30 14.69 2.24 44.25 0.10 14.79 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.03 16 5 C -0.55 -27.99 8.73 25.60 0.22 -27.76 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.91 -51.42 11.29 21.45 0.24 -51.18 16 9 Si 0.97 41.20 29.54 68.60 2.03 43.22 16 10 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 13 N -0.71 -27.74 5.03 -461.40 -2.32 -30.06 16 14 C 0.69 26.15 6.86 179.05 1.23 27.38 16 15 O -0.61 -28.04 11.17 -3.99 -0.04 -28.09 16 16 N -0.68 -18.41 5.34 -317.08 -1.69 -20.10 16 17 C 0.19 5.16 6.28 38.26 0.24 5.40 16 18 C -0.14 -4.42 8.63 22.35 0.19 -4.22 16 19 C -0.07 -1.86 9.70 22.50 0.22 -1.64 16 20 C -0.06 -1.56 5.87 -20.08 -0.12 -1.68 16 21 C 0.22 5.56 7.89 87.29 0.69 6.25 16 22 N -0.50 -11.86 10.91 -305.09 -3.33 -15.19 16 23 C -0.06 -0.94 11.87 83.47 0.99 0.05 16 24 C -0.07 -0.99 12.17 66.96 0.82 -0.17 16 25 O -0.21 -4.83 10.52 -8.93 -0.09 -4.92 16 26 C -0.04 -0.96 9.68 22.50 0.22 -0.75 16 27 C -0.14 -2.94 9.94 22.35 0.22 -2.71 16 28 H 0.04 1.85 5.65 -2.38 -0.01 1.83 16 29 H 0.02 1.25 7.84 -2.39 -0.02 1.23 16 30 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.40 12.86 8.56 -92.71 -0.79 12.06 16 35 H 0.42 8.00 8.83 -92.70 -0.82 7.19 16 36 H 0.12 4.35 6.42 -2.91 -0.02 4.33 16 37 H 0.14 3.40 7.90 -2.91 -0.02 3.37 16 38 H 0.22 1.88 8.06 -2.91 -0.02 1.85 16 39 H 0.26 1.01 8.06 -2.91 -0.02 0.98 16 40 H 0.15 2.86 7.83 -2.91 -0.02 2.84 16 41 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -70.93 347.28 0.51 -70.42 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -0.52 Total: 30.13 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.25 Total: 5.76 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -7.10 Total: -116.53 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.14 Total: -33.01 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -70.93 0.51 -70.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184584408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.066 kcal (2) G-P(sol) polarization free energy of solvation -70.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds