Wall clock time and date at job start Tue Mar 31 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47657 * 2 1 4 4 C 1.50699 * 109.47077 * 239.99769 * 2 1 3 5 5 H 1.07997 * 120.00362 * 239.99849 * 4 2 1 6 6 C 1.37879 * 120.00031 * 60.00457 * 4 2 1 7 7 N 1.31517 * 119.99550 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00245 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47362 * 89.99711 * 8 6 4 10 10 H 1.48498 * 109.47290 * 209.99853 * 8 6 4 11 11 H 1.48499 * 109.47090 * 329.99707 * 8 6 4 12 12 C 1.53002 * 109.47046 * 120.00228 * 2 1 3 13 13 O 1.45202 * 109.47310 * 299.99637 * 12 2 1 14 14 C 1.34662 * 117.00336 * 180.02562 * 13 12 2 15 15 O 1.21435 * 120.00148 * 0.02562 * 14 13 12 16 16 C 1.48057 * 120.00036 * 179.97438 * 14 13 12 17 17 C 1.39985 * 120.89662 * 0.02562 * 16 14 13 18 18 C 1.38042 * 119.13050 * 179.97438 * 17 16 14 19 19 N 1.31854 * 120.98706 * 359.97438 * 18 17 16 20 20 C 1.32221 * 121.98618 * 0.02562 * 19 18 17 21 21 N 1.39842 * 119.62805 * 179.97438 * 20 19 18 22 22 C 1.37178 * 126.48161 * 4.71444 * 21 20 19 23 23 C 1.34625 * 106.82684 * 179.84126 * 22 21 20 24 24 N 1.34152 * 108.21692 * 0.42204 * 23 22 21 25 25 C 1.30488 * 109.36987 * 359.73182 * 24 23 22 26 26 C 1.38913 * 120.75223 * 359.97438 * 20 19 18 27 27 H 1.09004 * 109.46763 * 300.00470 * 1 2 3 28 28 H 1.09002 * 109.47076 * 59.99907 * 1 2 3 29 29 H 1.08995 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47378 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46953 * 300.00168 * 3 2 1 32 32 H 1.08995 * 109.46845 * 59.99857 * 3 2 1 33 33 H 0.96998 * 119.99578 * 180.02562 * 7 6 4 34 34 H 1.09007 * 109.46917 * 179.97438 * 12 2 1 35 35 H 1.09000 * 109.47589 * 60.00060 * 12 2 1 36 36 H 1.07993 * 120.43732 * 359.95274 * 17 16 14 37 37 H 1.07999 * 119.51085 * 180.02562 * 18 17 16 38 38 H 1.07999 * 126.58589 * 359.97398 * 22 21 20 39 39 H 1.08003 * 125.89094 * 180.12190 * 23 22 21 40 40 H 1.08004 * 125.72303 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.53263 * 179.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6292 -1.7584 -3.7122 12 6 2.0399 -0.7213 1.2492 13 8 1.5560 -0.0368 2.4348 14 6 1.9183 -0.5483 3.6267 15 8 2.6195 -1.5385 3.6748 16 6 1.4625 0.0974 4.8787 17 6 0.6542 1.2398 4.8453 18 6 0.2498 1.8119 6.0347 19 7 0.6132 1.2980 7.1933 20 6 1.3755 0.2206 7.2734 21 7 1.7318 -0.2825 8.5286 22 6 1.2959 0.1773 9.7453 23 6 1.8805 -0.5902 10.6842 24 7 2.6602 -1.4893 10.0650 25 6 2.5801 -1.3156 8.7743 26 6 1.8265 -0.4174 6.1248 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 0.7082 1.1608 -3.4843 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -1.7490 1.2493 36 1 0.3512 1.6682 3.9014 37 1 -0.3743 2.6932 6.0161 38 1 0.6130 0.9962 9.9169 39 1 1.7485 -0.4951 11.7519 40 1 3.1008 -1.8954 8.0265 41 1 2.4493 -1.2969 6.1943 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184695020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:38 Heat of formation + Delta-G solvation = 21.348421 kcal Electronic energy + Delta-G solvation = -25135.304716 eV Core-core repulsion = 21403.081868 eV Total energy + Delta-G solvation = -3732.222848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.67694 -40.82924 -39.68194 -36.83059 -35.06817 -34.62231 -33.22777 -31.36788 -30.55337 -29.60828 -26.58988 -25.74131 -25.41520 -24.72743 -24.45266 -22.30041 -21.30771 -20.74506 -19.16414 -18.99576 -17.55391 -16.70117 -16.42160 -16.24953 -15.93106 -15.88946 -15.77681 -15.00942 -14.64807 -14.28656 -14.19593 -14.14131 -13.80090 -13.27447 -13.18816 -13.00672 -12.47556 -11.99165 -11.66119 -11.32309 -11.14777 -11.06532 -10.81993 -10.72993 -10.54136 -10.48338 -10.42559 -10.27193 -10.18577 -10.07149 -9.55637 -9.46793 -9.19634 -8.87787 -8.82074 -8.46724 -6.11361 -4.23270 0.10013 0.31434 1.77549 1.99653 2.53540 2.73335 2.79777 3.22072 3.29464 3.32873 3.38137 3.81559 4.14283 4.26229 4.30311 4.38961 4.50468 4.55095 4.99380 5.07217 5.09701 5.15581 5.21798 5.35407 5.63201 5.74884 5.87417 5.93508 5.93888 6.30928 6.33866 6.55621 6.72813 6.79777 6.85536 6.99742 7.00274 7.25014 7.26958 7.50124 7.60860 7.63862 7.83999 7.94026 8.06683 8.27697 8.76427 9.42878 10.89900 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.034541 B = 0.002477 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.438529 B =11302.622490 C =11920.884677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.071 3.929 3 C -0.131 4.131 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.084 3.916 13 O -0.337 6.337 14 C 0.499 3.501 15 O -0.501 6.501 16 C -0.039 4.039 17 C -0.123 4.123 18 C 0.129 3.871 19 N -0.481 5.481 20 C 0.336 3.664 21 N -0.410 5.410 22 C -0.026 4.026 23 C -0.031 4.031 24 N -0.478 5.478 25 C 0.195 3.805 26 C -0.123 4.123 27 H 0.016 0.984 28 H 0.085 0.915 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.085 0.915 32 H 0.016 0.984 33 H 0.262 0.738 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.165 0.835 37 H 0.179 0.821 38 H 0.183 0.817 39 H 0.177 0.823 40 H 0.213 0.787 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 2.798 18.586 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.070 3.930 3 C -0.188 4.188 4 C -0.552 4.552 5 H 0.076 0.924 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.012 3.988 13 O -0.252 6.252 14 C 0.342 3.658 15 O -0.390 6.390 16 C -0.048 4.048 17 C -0.143 4.143 18 C -0.029 4.029 19 N -0.193 5.193 20 C 0.109 3.891 21 N -0.092 5.092 22 C -0.155 4.155 23 C -0.176 4.176 24 N -0.195 5.195 25 C -0.086 4.086 26 C -0.145 4.145 27 H 0.035 0.965 28 H 0.104 0.896 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.104 0.896 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.183 0.817 37 H 0.196 0.804 38 H 0.200 0.800 39 H 0.194 0.806 40 H 0.230 0.770 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.767 2.441 19.506 19.738 hybrid contribution 0.189 -0.362 -2.047 2.087 sum -1.578 2.080 17.460 17.654 Atomic orbital electron populations 1.21789 0.97223 0.99075 1.00736 1.18270 0.93487 0.93120 0.88075 1.21786 0.98204 0.98095 1.00735 1.20907 1.32203 1.12396 0.89691 0.92433 1.24853 0.94742 0.94881 0.98837 1.69817 1.36176 1.22499 1.23444 0.86522 0.79308 0.79388 0.82379 1.20593 1.21105 1.19876 1.23854 0.98530 0.95997 0.80438 1.86557 1.68699 1.55534 1.14403 1.20805 0.78045 0.82077 0.84909 1.90827 1.34994 1.24887 1.88305 1.19487 0.98073 0.95949 0.91312 1.22711 0.95484 0.94419 1.01735 1.22685 0.96309 0.98562 0.85357 1.66851 1.11728 1.09626 1.31126 1.17901 0.95518 0.92072 0.83656 1.43109 1.35316 1.26627 1.04166 1.22938 1.05553 1.04043 0.82983 1.22423 0.99548 0.95689 0.99942 1.70358 1.21389 1.24112 1.03626 1.25457 0.96328 0.91781 0.95068 1.21616 1.01384 1.01713 0.89797 0.96504 0.89597 0.95732 0.95721 0.89607 0.96493 0.92809 0.92072 0.92084 0.81706 0.80449 0.80012 0.80619 0.77010 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.11 37.16 0.30 -2.63 16 2 C 0.07 1.62 0.58 -155.66 -0.09 1.53 16 3 C -0.13 -2.93 8.11 37.16 0.30 -2.62 16 4 C -0.51 -13.08 8.01 -34.44 -0.28 -13.36 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -22.96 9.35 55.43 0.52 -22.44 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.08 1.71 4.27 37.16 0.16 1.87 16 13 O -0.34 -5.96 8.23 -40.39 -0.33 -6.29 16 14 C 0.50 7.94 7.92 34.76 0.28 8.22 16 15 O -0.50 -9.04 16.23 -19.22 -0.31 -9.35 16 16 C -0.04 -0.48 5.91 -104.69 -0.62 -1.09 16 17 C -0.12 -1.23 9.70 -39.00 -0.38 -1.61 16 18 C 0.13 1.10 11.17 -17.61 -0.20 0.90 16 19 N -0.48 -5.01 9.87 -12.34 -0.12 -5.14 16 20 C 0.34 3.69 7.50 -154.43 -1.16 2.53 16 21 N -0.41 -4.40 2.98 -63.84 -0.19 -4.59 16 22 C -0.03 -0.25 11.17 -16.44 -0.18 -0.43 16 23 C -0.03 -0.31 11.85 -17.82 -0.21 -0.52 16 24 N -0.48 -5.68 11.24 -14.46 -0.16 -5.85 16 25 C 0.20 2.04 11.89 -89.58 -1.07 0.98 16 26 C -0.12 -1.37 9.07 -38.80 -0.35 -1.72 16 27 H 0.02 0.33 7.68 -51.93 -0.40 -0.07 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 32 H 0.02 0.33 7.68 -51.93 -0.40 -0.07 16 33 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.17 1.52 7.71 -52.49 -0.40 1.12 16 37 H 0.18 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.18 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.21 1.59 7.07 -52.48 -0.37 1.22 16 41 H 0.16 1.57 6.46 -52.49 -0.34 1.23 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -29.73 350.68 -8.96 -38.69 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.04 Total: 0.84 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -3.58 Total: -6.28 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.04 Total: -38.02 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.64 Total: -15.65 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.73 -8.96 -38.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184695020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.042 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds