Wall clock time and date at job start Tue Mar 31 2020 11:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47251 * 2 1 4 4 C 1.50696 * 109.47531 * 239.99938 * 2 1 3 5 5 H 1.07998 * 119.99848 * 241.36443 * 4 2 1 6 6 C 1.37878 * 120.00158 * 61.35884 * 4 2 1 7 7 N 1.31517 * 120.00379 * 193.96462 * 6 4 2 8 8 Si 1.86804 * 119.99832 * 13.96874 * 6 4 2 9 9 H 1.48498 * 109.47521 * 84.55044 * 8 6 4 10 10 H 1.48494 * 109.47026 * 204.55637 * 8 6 4 11 11 H 1.48501 * 109.46913 * 324.55149 * 8 6 4 12 12 C 1.53001 * 109.46835 * 119.99669 * 2 1 3 13 13 O 1.45191 * 109.47438 * 300.00341 * 12 2 1 14 14 C 1.34715 * 117.00316 * 180.02562 * 13 12 2 15 15 O 1.21470 * 119.99687 * 359.97438 * 14 13 12 16 16 C 1.47740 * 120.00140 * 180.02562 * 14 13 12 17 17 C 1.39672 * 120.11575 * 359.97438 * 16 14 13 18 18 C 1.37961 * 119.97517 * 180.02562 * 17 16 14 19 19 C 1.38284 * 120.22167 * 0.02562 * 18 17 16 20 20 C 1.38910 * 120.23712 * 359.96161 * 19 18 17 21 21 N 1.40276 * 119.98851 * 180.02562 * 20 19 18 22 22 C 1.36110 * 125.94107 * 4.70976 * 21 20 19 23 23 C 1.35372 * 106.04912 * 179.85389 * 22 21 20 24 24 N 1.33776 * 106.53601 * 0.40542 * 23 22 21 25 25 N 1.28605 * 109.06244 * 359.73888 * 24 23 22 26 26 C 1.38562 * 120.01861 * 0.27206 * 20 19 18 27 27 H 1.08993 * 109.47397 * 309.31703 * 1 2 3 28 28 H 1.09000 * 109.46875 * 69.31704 * 1 2 3 29 29 H 1.08996 * 109.47305 * 189.31315 * 1 2 3 30 30 H 1.08997 * 109.47373 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46876 * 299.99836 * 3 2 1 32 32 H 1.09003 * 109.46484 * 59.99905 * 3 2 1 33 33 H 0.96993 * 119.99784 * 180.02562 * 7 6 4 34 34 H 1.09010 * 109.46971 * 179.97438 * 12 2 1 35 35 H 1.09003 * 109.47058 * 60.00630 * 12 2 1 36 36 H 1.07996 * 120.01143 * 359.97438 * 17 16 14 37 37 H 1.07998 * 119.89363 * 180.02562 * 18 17 16 38 38 H 1.07999 * 119.87602 * 179.97438 * 19 18 17 39 39 H 1.08001 * 126.97463 * 359.96552 * 22 21 20 40 40 H 1.07996 * 126.73368 * 180.14853 * 23 22 21 41 41 H 1.08001 * 120.11395 * 179.74613 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6350 -1.6011 -1.1314 6 6 1.7227 -0.2233 -2.4825 7 7 1.9164 -0.9723 -3.5460 8 14 1.0280 1.5008 -2.6684 9 1 2.1420 2.4819 -2.7080 10 1 0.2475 1.5867 -3.9288 11 1 0.1420 1.8043 -1.5159 12 6 2.0399 -0.7212 1.2493 13 8 1.5559 -0.0368 2.4348 14 6 1.9182 -0.5483 3.6272 15 8 2.6190 -1.5393 3.6752 16 6 1.4624 0.0953 4.8764 17 6 0.6561 1.2346 4.8240 18 6 0.2325 1.8336 5.9924 19 6 0.6039 1.3102 7.2173 20 6 1.4053 0.1774 7.2799 21 7 1.7785 -0.3495 8.5253 22 6 1.3542 0.0943 9.7400 23 6 1.9564 -0.6968 10.6587 24 7 2.7129 -1.5642 9.9769 25 7 2.5862 -1.3331 8.7182 26 6 1.8404 -0.4294 6.1127 27 1 -0.3634 0.6511 0.7950 28 1 -0.3633 0.3630 -0.9614 29 1 -0.3634 -1.0141 0.1663 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6988 -0.6294 -4.4268 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.3651 1.6469 3.8692 37 1 -0.3913 2.7143 5.9503 38 1 0.2694 1.7839 8.1284 39 1 0.6736 0.9106 9.9319 40 1 1.8506 -0.6365 11.7318 41 1 2.4669 -1.3078 6.1596 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184818228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:18 Heat of formation + Delta-G solvation = 65.450560 kcal Electronic energy + Delta-G solvation = -25222.310383 eV Core-core repulsion = 21491.999948 eV Total energy + Delta-G solvation = -3730.310436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.80631 -40.57570 -39.25435 -36.93521 -35.22283 -35.00778 -32.23089 -31.78329 -31.22622 -30.45359 -26.75825 -26.33321 -25.13356 -24.78779 -24.47694 -22.85882 -21.75231 -20.83957 -19.23416 -19.15388 -17.19764 -16.87722 -16.86332 -16.22333 -16.06515 -16.05489 -15.63026 -15.23176 -15.11058 -14.57350 -14.28045 -13.79223 -13.49218 -13.19612 -12.91915 -12.60288 -12.45194 -12.29994 -12.14688 -11.99503 -11.77464 -11.76685 -11.40704 -11.36277 -10.68465 -10.41142 -10.35421 -10.23132 -10.12103 -9.88174 -9.84847 -9.64328 -9.16940 -9.12896 -8.71422 -8.51835 -6.20331 -4.19126 0.02333 0.40908 1.48161 1.77021 2.16420 2.45210 2.82845 3.22560 3.30226 3.33256 3.36570 3.87888 4.10227 4.21939 4.31807 4.47762 4.56248 4.61369 4.69813 4.77670 4.99573 5.10557 5.12385 5.31687 5.58369 5.69022 5.72425 5.75733 5.81756 5.82786 5.98815 6.06832 6.18289 6.36562 6.45502 6.51267 6.61149 6.70451 6.75284 6.91513 7.15416 7.37773 7.63848 7.93799 8.05502 8.36691 8.82271 9.42558 10.92346 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033735 B = 0.002615 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.795393 B =10706.425549 C =11325.323997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.044 3.956 3 C -0.147 4.147 4 C -0.520 4.520 5 H 0.076 0.924 6 C 0.078 3.922 7 N -0.889 5.889 8 Si 0.885 3.115 9 H -0.285 1.285 10 H -0.304 1.304 11 H -0.246 1.246 12 C 0.093 3.907 13 O -0.347 6.347 14 C 0.500 3.500 15 O -0.501 6.501 16 C -0.094 4.094 17 C -0.050 4.050 18 C -0.109 4.109 19 C -0.089 4.089 20 C 0.105 3.895 21 N -0.240 5.240 22 C -0.050 4.050 23 C -0.044 4.044 24 N -0.263 5.263 25 N -0.073 5.073 26 C -0.041 4.041 27 H 0.031 0.969 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.195 0.805 40 H 0.196 0.804 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 9.314 24.997 27.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.043 3.957 3 C -0.203 4.203 4 C -0.557 4.557 5 H 0.094 0.906 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.717 3.283 9 H -0.212 1.212 10 H -0.233 1.233 11 H -0.172 1.172 12 C 0.021 3.979 13 O -0.263 6.263 14 C 0.343 3.657 15 O -0.390 6.390 16 C -0.096 4.096 17 C -0.069 4.069 18 C -0.128 4.128 19 C -0.110 4.110 20 C 0.014 3.986 21 N -0.028 5.028 22 C -0.198 4.198 23 C -0.200 4.200 24 N -0.129 5.129 25 N -0.052 5.052 26 C -0.061 4.061 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.172 0.828 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.212 0.788 40 H 0.213 0.787 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.230 7.887 24.143 25.931 hybrid contribution -0.909 1.643 0.197 1.888 sum -6.139 9.529 24.339 26.850 Atomic orbital electron populations 1.22236 0.97346 0.99942 1.00246 1.18594 0.93159 0.92595 0.91358 1.22303 1.00801 0.98111 0.99131 1.20646 1.34669 1.12528 0.87904 0.90558 1.24920 0.94521 0.97441 0.95602 1.69940 1.47830 1.35950 0.98763 0.87283 0.79507 0.85331 0.76138 1.21221 1.23303 1.17216 1.23521 0.98897 0.95907 0.79579 1.86504 1.69250 1.55862 1.14643 1.20835 0.77998 0.82148 0.84725 1.90858 1.35047 1.24897 1.88211 1.19125 1.01816 0.97777 0.90854 1.21826 0.92378 0.92391 1.00321 1.21070 1.00381 1.00704 0.90633 1.21126 0.96331 0.93490 1.00012 1.17379 1.02574 0.97003 0.81632 1.44753 1.29760 1.22362 1.05928 1.23843 1.06875 1.05484 0.83623 1.23694 0.99168 0.95512 1.01625 1.75168 1.19256 1.21646 0.96817 1.78488 1.09523 1.04090 1.13103 1.21039 0.96805 0.99481 0.88773 0.94978 0.92634 0.93716 0.93100 0.94112 0.94144 0.92403 0.91460 0.91366 0.82831 0.83451 0.84195 0.78818 0.78721 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 7.58 37.16 0.28 -2.62 16 2 C 0.04 0.97 0.58 -155.66 -0.09 0.88 16 3 C -0.15 -3.02 7.55 37.16 0.28 -2.74 16 4 C -0.52 -13.90 8.62 -34.44 -0.30 -14.20 16 5 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.08 2.16 5.32 -17.82 -0.09 2.07 16 7 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 8 Si 0.89 20.90 22.79 -169.99 -3.87 17.03 16 9 H -0.28 -6.68 7.10 56.52 0.40 -6.28 16 10 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.25 -5.31 4.65 56.52 0.26 -5.04 16 12 C 0.09 1.87 4.26 37.16 0.16 2.03 16 13 O -0.35 -5.95 8.31 -40.53 -0.34 -6.28 16 14 C 0.50 8.09 7.90 34.61 0.27 8.36 16 15 O -0.50 -9.57 16.13 -19.24 -0.31 -9.88 16 16 C -0.09 -1.15 5.87 -105.00 -0.62 -1.77 16 17 C -0.05 -0.46 9.61 -39.15 -0.38 -0.84 16 18 C -0.11 -0.68 10.02 -39.67 -0.40 -1.08 16 19 C -0.09 -0.56 9.45 -39.32 -0.37 -0.93 16 20 C 0.11 1.02 6.67 -83.62 -0.56 0.46 16 21 N -0.24 -2.50 3.56 -10.51 -0.04 -2.54 16 22 C -0.05 -0.35 10.91 -16.68 -0.18 -0.53 16 23 C -0.04 -0.36 12.05 -17.73 -0.21 -0.57 16 24 N -0.26 -3.29 12.39 30.24 0.37 -2.92 16 25 N -0.07 -0.98 12.42 60.35 0.75 -0.24 16 26 C -0.04 -0.49 9.16 -38.99 -0.36 -0.85 16 27 H 0.03 0.57 7.94 -51.93 -0.41 0.16 16 28 H 0.05 1.20 4.30 -51.93 -0.22 0.98 16 29 H 0.04 0.90 8.12 -51.93 -0.42 0.48 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 32 H 0.04 0.71 7.68 -51.93 -0.40 0.32 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.15 1.32 7.61 -52.49 -0.40 0.92 16 37 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.14 0.40 6.77 -52.49 -0.36 0.05 16 39 H 0.19 0.44 7.12 -52.49 -0.37 0.07 16 40 H 0.20 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.16 2.14 7.29 -52.49 -0.38 1.76 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -33.53 339.88 -4.99 -38.52 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.89 Total: -0.93 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -2.56 Total: -12.33 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 1.86 Total: -31.25 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.65 Total: -16.17 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -3.87 Total: 17.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.53 -4.99 -38.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184818228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.969 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds