Wall clock time and date at job start Tue Mar 31 2020 11:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47251 * 2 1 4 4 C 1.50696 * 109.47531 * 239.99938 * 2 1 3 5 5 H 1.07998 * 119.99848 * 241.36443 * 4 2 1 6 6 C 1.37878 * 120.00158 * 61.35884 * 4 2 1 7 7 N 1.31517 * 120.00379 * 193.96462 * 6 4 2 8 8 Si 1.86804 * 119.99832 * 13.96874 * 6 4 2 9 9 H 1.48498 * 109.47521 * 84.55044 * 8 6 4 10 10 H 1.48494 * 109.47026 * 204.55637 * 8 6 4 11 11 H 1.48501 * 109.46913 * 324.55149 * 8 6 4 12 12 C 1.53001 * 109.46835 * 119.99669 * 2 1 3 13 13 O 1.45191 * 109.47438 * 300.00341 * 12 2 1 14 14 C 1.34715 * 117.00316 * 180.02562 * 13 12 2 15 15 O 1.21470 * 119.99687 * 359.97438 * 14 13 12 16 16 C 1.47740 * 120.00140 * 180.02562 * 14 13 12 17 17 C 1.39672 * 120.11575 * 359.97438 * 16 14 13 18 18 C 1.37961 * 119.97517 * 180.02562 * 17 16 14 19 19 C 1.38284 * 120.22167 * 0.02562 * 18 17 16 20 20 C 1.38910 * 120.23712 * 359.96161 * 19 18 17 21 21 N 1.40276 * 119.98851 * 180.02562 * 20 19 18 22 22 C 1.36110 * 125.94107 * 4.70976 * 21 20 19 23 23 C 1.35372 * 106.04912 * 179.85389 * 22 21 20 24 24 N 1.33776 * 106.53601 * 0.40542 * 23 22 21 25 25 N 1.28605 * 109.06244 * 359.73888 * 24 23 22 26 26 C 1.38562 * 120.01861 * 0.27206 * 20 19 18 27 27 H 1.08993 * 109.47397 * 309.31703 * 1 2 3 28 28 H 1.09000 * 109.46875 * 69.31704 * 1 2 3 29 29 H 1.08996 * 109.47305 * 189.31315 * 1 2 3 30 30 H 1.08997 * 109.47373 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46876 * 299.99836 * 3 2 1 32 32 H 1.09003 * 109.46484 * 59.99905 * 3 2 1 33 33 H 0.96993 * 119.99784 * 180.02562 * 7 6 4 34 34 H 1.09010 * 109.46971 * 179.97438 * 12 2 1 35 35 H 1.09003 * 109.47058 * 60.00630 * 12 2 1 36 36 H 1.07996 * 120.01143 * 359.97438 * 17 16 14 37 37 H 1.07998 * 119.89363 * 180.02562 * 18 17 16 38 38 H 1.07999 * 119.87602 * 179.97438 * 19 18 17 39 39 H 1.08001 * 126.97463 * 359.96552 * 22 21 20 40 40 H 1.07996 * 126.73368 * 180.14853 * 23 22 21 41 41 H 1.08001 * 120.11395 * 179.74613 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6350 -1.6011 -1.1314 6 6 1.7227 -0.2233 -2.4825 7 7 1.9164 -0.9723 -3.5460 8 14 1.0280 1.5008 -2.6684 9 1 2.1420 2.4819 -2.7080 10 1 0.2475 1.5867 -3.9288 11 1 0.1420 1.8043 -1.5159 12 6 2.0399 -0.7212 1.2493 13 8 1.5559 -0.0368 2.4348 14 6 1.9182 -0.5483 3.6272 15 8 2.6190 -1.5393 3.6752 16 6 1.4624 0.0953 4.8764 17 6 0.6561 1.2346 4.8240 18 6 0.2325 1.8336 5.9924 19 6 0.6039 1.3102 7.2173 20 6 1.4053 0.1774 7.2799 21 7 1.7785 -0.3495 8.5253 22 6 1.3542 0.0943 9.7400 23 6 1.9564 -0.6968 10.6587 24 7 2.7129 -1.5642 9.9769 25 7 2.5862 -1.3331 8.7182 26 6 1.8404 -0.4294 6.1127 27 1 -0.3634 0.6511 0.7950 28 1 -0.3633 0.3630 -0.9614 29 1 -0.3634 -1.0141 0.1663 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6988 -0.6294 -4.4268 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.3651 1.6469 3.8692 37 1 -0.3913 2.7143 5.9503 38 1 0.2694 1.7839 8.1284 39 1 0.6736 0.9106 9.9319 40 1 1.8506 -0.6365 11.7318 41 1 2.4669 -1.3078 6.1596 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184818228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:17 Heat of formation + Delta-G solvation = 42.922331 kcal Electronic energy + Delta-G solvation = -25223.287281 eV Core-core repulsion = 21491.999948 eV Total energy + Delta-G solvation = -3731.287333 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.48552 -41.75299 -40.17893 -38.51038 -36.79017 -35.77021 -33.86488 -32.90631 -31.91344 -31.17409 -28.26193 -27.96445 -27.05980 -25.65269 -25.40288 -23.67671 -22.44303 -21.81923 -21.00398 -20.05226 -18.41765 -17.97309 -17.66092 -17.62152 -17.45842 -17.29143 -17.00385 -16.27848 -15.82723 -15.27868 -15.17389 -14.99372 -14.87241 -14.82401 -14.19029 -14.13744 -13.86313 -13.71498 -13.34074 -13.10986 -13.00725 -12.54462 -12.43727 -12.26780 -12.16412 -12.04857 -12.00124 -11.87569 -11.68927 -11.51182 -11.07962 -10.63630 -10.51063 -10.41182 -10.34180 -9.82804 -8.33767 -6.37271 -0.66431 -0.36348 0.84521 1.12126 1.37910 1.38007 1.40900 1.51822 1.52243 1.58912 2.33446 2.54088 3.02214 3.29642 3.43129 3.60185 3.67018 3.88908 3.99607 4.03240 4.10411 4.18506 4.20657 4.23717 4.38445 4.55097 4.56400 4.68909 4.79861 4.83820 4.93859 4.97728 5.08603 5.11209 5.11365 5.18075 5.22829 5.39183 5.40816 5.45396 5.66232 5.73989 5.74765 6.24062 6.58192 6.66427 7.27979 7.35855 8.83027 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033735 B = 0.002615 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.795393 B =10706.425549 C =11325.323997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.040 3.960 3 C -0.145 4.145 4 C -0.526 4.526 5 H 0.028 0.972 6 C 0.020 3.980 7 N -0.943 5.943 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.312 1.312 11 H -0.202 1.202 12 C 0.105 3.895 13 O -0.334 6.334 14 C 0.498 3.502 15 O -0.545 6.545 16 C -0.118 4.118 17 C -0.046 4.046 18 C -0.089 4.089 19 C -0.060 4.060 20 C 0.093 3.907 21 N -0.247 5.247 22 C -0.027 4.027 23 C -0.054 4.054 24 N -0.304 5.304 25 N -0.137 5.137 26 C -0.062 4.062 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.267 0.733 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.164 0.836 37 H 0.197 0.803 38 H 0.192 0.808 39 H 0.252 0.748 40 H 0.231 0.769 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 14.474 28.491 33.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.039 3.961 3 C -0.202 4.202 4 C -0.564 4.564 5 H 0.046 0.954 6 C -0.178 4.178 7 N -0.582 5.582 8 Si 0.773 3.227 9 H -0.206 1.206 10 H -0.241 1.241 11 H -0.126 1.126 12 C 0.031 3.969 13 O -0.250 6.250 14 C 0.344 3.656 15 O -0.437 6.437 16 C -0.119 4.119 17 C -0.064 4.064 18 C -0.107 4.107 19 C -0.080 4.080 20 C 0.002 3.998 21 N -0.035 5.035 22 C -0.175 4.175 23 C -0.211 4.211 24 N -0.169 5.169 25 N -0.114 5.114 26 C -0.082 4.082 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.182 0.818 37 H 0.214 0.786 38 H 0.209 0.791 39 H 0.268 0.732 40 H 0.248 0.752 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.661 13.038 27.667 31.788 hybrid contribution 0.166 -0.016 -0.702 0.721 sum -8.495 13.022 26.965 31.127 Atomic orbital electron populations 1.22173 0.95609 1.00666 1.01107 1.18527 0.94431 0.93457 0.89656 1.22251 1.00681 0.96578 1.00673 1.20934 1.33644 1.11335 0.90447 0.95365 1.25840 0.95170 1.01849 0.94984 1.70098 1.50254 1.38347 0.99473 0.86319 0.79634 0.79594 0.77159 1.20599 1.24111 1.12612 1.23055 0.97922 0.95153 0.80762 1.86463 1.69103 1.55194 1.14232 1.21682 0.76894 0.81612 0.85363 1.90839 1.37236 1.27060 1.88584 1.18854 1.04827 0.99916 0.88343 1.22056 0.91138 0.90839 1.02403 1.21607 0.99081 1.01030 0.88961 1.21735 0.93068 0.90908 1.02289 1.17631 1.03449 0.98142 0.80594 1.44941 1.29422 1.21978 1.07126 1.24781 1.05709 1.05420 0.81615 1.24462 0.98345 0.94720 1.03531 1.75096 1.20970 1.23561 0.97236 1.78488 1.12453 1.06734 1.13725 1.20820 0.97760 0.99375 0.90272 0.91176 0.93409 0.94292 0.93645 0.94460 0.90334 0.92432 0.92927 0.93136 0.81805 0.78604 0.79139 0.73205 0.75234 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 7.58 71.98 0.55 -4.86 16 2 C 0.04 1.75 0.58 -52.93 -0.03 1.72 16 3 C -0.15 -5.59 7.55 71.98 0.54 -5.05 16 4 C -0.53 -29.28 8.62 25.60 0.22 -29.06 16 5 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 6 C 0.02 1.11 5.32 84.65 0.45 1.56 16 7 N -0.94 -58.37 13.96 21.45 0.30 -58.07 16 8 Si 0.94 42.38 22.79 68.60 1.56 43.94 16 9 H -0.28 -12.21 7.10 99.48 0.71 -11.50 16 10 H -0.31 -14.31 7.11 99.48 0.71 -13.60 16 11 H -0.20 -7.69 4.65 99.48 0.46 -7.23 16 12 C 0.10 4.33 4.26 71.98 0.31 4.64 16 13 O -0.33 -11.28 8.31 -56.25 -0.47 -11.74 16 14 C 0.50 16.65 7.90 70.33 0.56 17.21 16 15 O -0.55 -22.63 16.13 19.93 0.32 -22.31 16 16 C -0.12 -2.81 5.87 -20.11 -0.12 -2.93 16 17 C -0.05 -0.65 9.61 22.55 0.22 -0.43 16 18 C -0.09 -0.51 10.02 22.21 0.22 -0.29 16 19 C -0.06 -0.38 9.45 22.44 0.21 -0.17 16 20 C 0.09 1.58 6.67 38.03 0.25 1.83 16 21 N -0.25 -4.72 3.56 -187.15 -0.67 -5.39 16 22 C -0.03 -0.27 10.91 83.37 0.91 0.64 16 23 C -0.05 -0.74 12.05 83.73 1.01 0.27 16 24 N -0.30 -7.71 12.39 -58.24 -0.72 -8.43 16 25 N -0.14 -3.80 12.42 37.02 0.46 -3.34 16 26 C -0.06 -1.52 9.16 22.66 0.21 -1.31 16 27 H 0.07 2.21 7.94 -2.39 -0.02 2.19 16 28 H 0.05 1.93 4.30 -2.39 -0.01 1.92 16 29 H 0.04 1.53 8.12 -2.39 -0.02 1.51 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.46 2.25 -2.39 -0.01 1.46 16 32 H 0.08 2.43 7.68 -2.39 -0.02 2.41 16 33 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 34 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.16 2.00 7.61 -2.91 -0.02 1.97 16 37 H 0.20 -0.59 8.06 -2.91 -0.02 -0.61 16 38 H 0.19 -0.67 6.77 -2.91 -0.02 -0.69 16 39 H 0.25 -0.83 7.12 -2.91 -0.02 -0.85 16 40 H 0.23 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.12 3.78 7.29 -2.91 -0.02 3.76 16 Total: -1.00 -84.23 339.88 7.11 -77.11 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 0.82 Total: 4.47 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 5.50 Total: -16.24 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -0.63 Total: -75.24 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.15 Total: -34.05 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.56 Total: 43.94 kcal Total: -84.23 7.11 -77.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184818228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.034 kcal (2) G-P(sol) polarization free energy of solvation -84.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds