Wall clock time and date at job start Tue Mar 31 2020 11:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46924 * 2 1 4 4 H 1.08997 * 109.46806 * 178.48308 * 3 2 1 5 5 C 1.50698 * 109.47370 * 298.48002 * 3 2 1 6 6 H 1.08000 * 120.00048 * 120.00118 * 5 3 2 7 7 C 1.37875 * 119.99822 * 300.00617 * 5 3 2 8 8 N 1.31512 * 120.00357 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99920 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46861 * 59.99693 * 9 7 5 11 11 H 1.48495 * 109.47190 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46878 * 299.99821 * 9 7 5 13 13 N 1.46498 * 109.47201 * 58.48292 * 3 2 1 14 14 S 1.65602 * 120.00106 * 96.28682 * 13 3 2 15 15 O 1.42099 * 106.39890 * 311.58725 * 14 13 3 16 16 O 1.42096 * 106.40106 * 178.66924 * 14 13 3 17 17 C 1.76204 * 107.21829 * 65.12707 * 14 13 3 18 18 C 1.34671 * 125.99062 * 270.30143 * 17 14 13 19 19 N 1.36880 * 106.81488 * 180.19075 * 18 17 14 20 20 C 1.46499 * 126.39471 * 179.84016 * 19 18 17 21 21 C 1.52992 * 109.47216 * 269.70883 * 20 19 18 22 22 C 1.53006 * 109.47254 * 175.00121 * 21 20 19 23 23 C 1.53003 * 109.47570 * 295.00244 * 21 20 19 24 24 C 1.35047 * 107.20467 * 359.57591 * 19 18 17 25 25 N 1.30498 * 108.70314 * 0.26388 * 24 19 18 26 26 H 1.09003 * 109.46884 * 175.75867 * 1 2 3 27 27 H 1.09002 * 109.46819 * 295.75606 * 1 2 3 28 28 H 1.09001 * 109.46918 * 55.75712 * 1 2 3 29 29 H 1.09002 * 109.46688 * 240.00113 * 2 1 3 30 30 H 1.08999 * 109.46871 * 119.99974 * 2 1 3 31 31 H 0.97001 * 120.00381 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00190 * 276.28772 * 13 3 2 33 33 H 1.07996 * 126.58802 * 0.04375 * 18 17 14 34 34 H 1.09002 * 109.47079 * 29.71448 * 20 19 18 35 35 H 1.09004 * 109.46869 * 149.71232 * 20 19 18 36 36 H 1.08998 * 109.47167 * 55.00522 * 21 20 19 37 37 H 1.08998 * 109.46706 * 60.00119 * 22 21 20 38 38 H 1.08998 * 109.47001 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47024 * 300.00305 * 22 21 20 40 40 H 1.08999 * 109.46682 * 59.99698 * 23 21 20 41 41 H 1.08999 * 109.47058 * 180.02562 * 23 21 20 42 42 H 1.09002 * 109.46803 * 299.99933 * 23 21 20 43 43 H 1.08002 * 125.64785 * 180.22652 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 0.0272 5 6 1.5687 2.1419 -1.2488 6 1 0.9456 3.0208 -1.1731 7 6 1.9329 1.6598 -2.4881 8 7 2.6920 0.5899 -2.5805 9 14 1.3481 2.5265 -4.0363 10 1 1.8426 3.9268 -4.0364 11 1 1.8737 1.8162 -5.2297 12 1 -0.1364 2.5257 -4.0731 13 7 1.5221 2.1435 1.1774 14 16 2.4502 2.2652 2.5435 15 8 2.9420 0.9594 2.8120 16 8 1.6900 3.0171 3.4794 17 6 3.8525 3.2509 2.1352 18 6 5.0262 2.7971 1.6556 19 7 5.8322 3.8898 1.4823 20 6 7.2090 3.8838 0.9817 21 6 8.1783 3.7415 2.1568 22 6 9.6074 3.6100 1.6262 23 6 8.0788 4.9778 3.0527 24 6 5.1192 4.9750 1.8535 25 7 3.9362 4.5853 2.2428 26 1 -0.3633 -1.0249 -0.0760 27 1 -0.3633 0.4466 0.9256 28 1 -0.3633 0.5783 -0.8495 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.9485 0.2509 -3.4524 32 1 0.6355 2.5365 1.1569 33 1 5.2830 1.7685 1.4497 34 1 7.3429 3.0465 0.2968 35 1 7.4089 4.8180 0.4569 36 1 7.9219 2.8531 2.7339 37 1 9.8638 4.4984 1.0491 38 1 10.2979 3.5082 2.4634 39 1 9.6783 2.7292 0.9879 40 1 7.0608 5.0715 3.4307 41 1 8.7698 4.8766 3.8896 42 1 8.3354 5.8663 2.4756 43 1 5.4702 5.9962 1.8323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186431433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:22 Heat of formation + Delta-G solvation = -55.865138 kcal Electronic energy + Delta-G solvation = -25339.898604 eV Core-core repulsion = 21739.771476 eV Total energy + Delta-G solvation = -3600.127128 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.22597 -38.27732 -37.69408 -37.62199 -36.83032 -34.07477 -33.71233 -32.00183 -30.91441 -28.23055 -28.14294 -27.52675 -25.37490 -23.49007 -22.53452 -21.80576 -21.26578 -20.13011 -19.07853 -18.75909 -17.90768 -17.02981 -16.92634 -16.56272 -16.34011 -16.01432 -15.46760 -15.21668 -14.99659 -14.82991 -14.64423 -14.51254 -14.01209 -13.90689 -13.40634 -13.20954 -13.15037 -13.03680 -12.96089 -12.79622 -12.64957 -12.56035 -12.44154 -12.38483 -12.15584 -12.00168 -11.79487 -11.76432 -11.48081 -11.19896 -10.98811 -10.75493 -10.51587 -10.02791 -9.93140 -8.07948 -6.19477 -0.38206 0.63114 1.45738 1.47665 1.53904 1.64487 1.71081 2.32403 2.50464 2.89799 3.21216 3.31315 3.64121 3.70582 3.77309 3.90555 4.09809 4.22081 4.32320 4.44022 4.51975 4.63083 4.72291 4.77013 4.83209 4.90285 4.92453 4.93416 5.04097 5.16511 5.19820 5.28593 5.32415 5.36808 5.49981 5.63844 5.73927 5.75991 6.08162 6.12722 6.19331 6.47433 6.74362 6.88349 7.47736 8.96344 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012288 B = 0.004999 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.148145 B = 5600.307205 C = 6875.604679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.135 4.135 3 C 0.286 3.714 4 H 0.023 0.977 5 C -0.526 4.526 6 H 0.059 0.941 7 C 0.028 3.972 8 N -0.909 5.909 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.273 1.273 13 N -1.097 6.097 14 S 2.737 3.263 15 O -0.984 6.984 16 O -0.995 6.995 17 C -0.579 4.579 18 C 0.074 3.926 19 N -0.441 5.441 20 C 0.094 3.906 21 C -0.110 4.110 22 C -0.140 4.140 23 C -0.153 4.153 24 C 0.193 3.807 25 N -0.461 5.461 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.415 0.585 33 H 0.199 0.801 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.665 6.967 4.897 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.175 4.175 3 C 0.181 3.819 4 H 0.041 0.959 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.173 4.173 8 N -0.548 5.548 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.857 5.857 14 S 2.825 3.175 15 O -0.974 6.974 16 O -0.985 6.985 17 C -0.791 4.791 18 C -0.070 4.070 19 N -0.120 5.120 20 C -0.027 4.027 21 C -0.129 4.129 22 C -0.198 4.198 23 C -0.210 4.210 24 C -0.093 4.093 25 N -0.178 5.178 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.250 0.750 33 H 0.216 0.784 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 13.286 6.932 5.807 16.071 hybrid contribution 0.303 0.237 -1.582 1.628 sum 13.589 7.168 4.226 15.934 Atomic orbital electron populations 1.21509 0.96122 0.99843 1.00885 1.21899 0.96538 0.98532 1.00497 1.18287 0.92782 0.88944 0.81863 0.95913 1.21421 1.32230 1.12070 0.90805 0.92237 1.25471 0.95138 0.95487 1.01199 1.69958 1.36632 1.23169 1.25074 0.85744 0.78841 0.78479 0.79307 1.20342 1.21015 1.19809 1.55341 1.28650 1.70546 1.31198 1.00257 0.72539 0.72499 0.72172 1.93531 1.82204 1.37469 1.84194 1.93464 1.70485 1.73362 1.61229 1.33035 1.18144 1.03795 1.24109 1.22903 0.90301 0.94934 0.98844 1.46012 1.13806 1.06119 1.46073 1.22581 0.75417 1.07170 0.97500 1.21490 0.96036 0.99684 0.95673 1.21743 0.93266 1.02992 1.01770 1.21932 1.01488 0.97608 1.00001 1.25958 0.87554 0.95361 1.00412 1.70210 1.20058 1.08414 1.19165 0.93802 0.93614 0.93159 0.90369 0.95019 0.92663 0.74996 0.78390 0.87784 0.85569 0.91952 0.90848 0.91513 0.92010 0.94064 0.91752 0.90390 0.73364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 9.51 71.99 0.68 -4.59 16 2 C -0.13 -6.34 5.69 30.60 0.17 -6.16 16 3 C 0.29 13.66 2.46 44.24 0.11 13.77 16 4 H 0.02 1.15 7.61 -2.39 -0.02 1.14 16 5 C -0.53 -26.67 7.51 25.60 0.19 -26.47 16 6 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.03 1.40 5.30 84.65 0.45 1.85 16 8 N -0.91 -48.00 11.31 21.45 0.24 -47.76 16 9 Si 0.95 41.06 29.54 68.60 2.03 43.08 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 N -1.10 -46.78 4.75 -172.54 -0.82 -47.60 16 14 S 2.74 114.73 5.80 -56.49 -0.33 114.40 16 15 O -0.98 -43.72 17.26 -128.00 -2.21 -45.92 16 16 O -1.00 -45.56 18.02 -128.00 -2.31 -47.86 16 17 C -0.58 -22.34 6.98 83.52 0.58 -21.76 16 18 C 0.07 2.40 11.06 83.09 0.92 3.32 16 19 N -0.44 -10.96 2.57 -529.07 -1.36 -12.32 16 20 C 0.09 1.42 5.58 86.38 0.48 1.91 16 21 C -0.11 -1.45 3.13 -10.79 -0.03 -1.49 16 22 C -0.14 -1.28 9.19 71.98 0.66 -0.62 16 23 C -0.15 -1.94 8.89 71.98 0.64 -1.30 16 24 C 0.19 5.15 10.86 180.26 1.96 7.11 16 25 N -0.46 -17.07 11.25 -197.76 -2.23 -19.29 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.75 7.59 -2.39 -0.02 1.73 16 28 H 0.05 2.20 7.12 -2.39 -0.02 2.18 16 29 H 0.08 4.02 6.03 -2.39 -0.01 4.00 16 30 H 0.03 1.45 7.80 -2.39 -0.02 1.43 16 31 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 32 H 0.42 16.53 8.68 -96.75 -0.84 15.69 16 33 H 0.20 5.92 8.06 -2.91 -0.02 5.89 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.04 0.69 6.50 -2.39 -0.02 0.68 16 41 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.25 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -70.51 364.83 0.00 -70.51 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.16 Total: 27.21 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 6.82 Total: -34.44 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -4.16 Total: -126.97 kcal Atomic # 8 Polarization: -89.27 SS G_CDS: -4.52 Total: -93.79 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 16 Polarization: 114.73 SS G_CDS: -0.33 Total: 114.40 kcal Total: -70.51 0.00 -70.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186431433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.641 kcal (2) G-P(sol) polarization free energy of solvation -70.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds