Wall clock time and date at job start Tue Mar 31 2020 11:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47093 * 2 1 4 4 H 1.08999 * 109.46944 * 54.99498 * 3 2 1 5 5 C 1.50704 * 109.47074 * 175.00009 * 3 2 1 6 6 H 1.08000 * 119.99714 * 120.00207 * 5 3 2 7 7 C 1.37871 * 119.99951 * 299.99633 * 5 3 2 8 8 N 1.31519 * 120.00350 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00122 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47021 * 90.00157 * 9 7 5 11 11 H 1.48500 * 109.47610 * 210.00502 * 9 7 5 12 12 H 1.48507 * 109.47246 * 330.00364 * 9 7 5 13 13 O 1.45199 * 109.46950 * 294.99890 * 3 2 1 14 14 C 1.34717 * 116.99775 * 89.99949 * 13 3 2 15 15 O 1.21470 * 120.00128 * 359.97438 * 14 13 3 16 16 C 1.47728 * 119.99585 * 179.97438 * 14 13 3 17 17 C 1.39650 * 120.15151 * 354.27723 * 16 14 13 18 18 C 1.37929 * 119.84560 * 179.97438 * 17 16 14 19 19 C 1.38382 * 120.15085 * 0.02562 * 18 17 16 20 20 C 1.38355 * 120.30497 * 359.97438 * 19 18 17 21 21 C 1.37961 * 120.14610 * 359.78906 * 20 19 18 22 22 C 1.50701 * 120.07318 * 180.25559 * 21 20 19 23 23 N 1.46504 * 109.47194 * 263.85564 * 22 21 20 24 24 C 1.34428 * 126.82439 * 124.71131 * 23 22 21 25 25 N 1.30834 * 108.07739 * 179.89571 * 24 23 22 26 26 C 1.33242 * 109.82855 * 0.37983 * 25 24 23 27 27 N 1.30721 * 108.94512 * 359.76583 * 26 25 24 28 28 H 1.09005 * 109.47353 * 60.00369 * 1 2 3 29 29 H 1.08998 * 109.47127 * 300.00201 * 1 2 3 30 30 H 1.09005 * 109.46957 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47353 * 119.99630 * 2 1 3 32 32 H 1.08998 * 109.47127 * 239.99799 * 2 1 3 33 33 H 0.96996 * 120.00282 * 179.97438 * 8 7 5 34 34 H 1.07993 * 120.07813 * 359.97438 * 17 16 14 35 35 H 1.08000 * 119.91957 * 179.97438 * 18 17 16 36 36 H 1.08001 * 119.85197 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.92529 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47619 * 23.85501 * 22 21 20 39 39 H 1.09008 * 109.47361 * 143.85768 * 22 21 20 40 40 H 1.08000 * 125.96041 * 0.03445 * 24 23 22 41 41 H 1.07999 * 125.52844 * 179.72785 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8813 1.3818 10 1 6.4415 2.1143 2.0850 11 1 6.4396 -0.3097 2.1549 12 1 6.6136 0.8417 0.0278 13 8 1.6559 2.0916 -1.2407 14 6 0.4684 2.7277 -1.2560 15 8 -0.2273 2.7392 -0.2603 16 6 0.0123 3.4110 -2.4838 17 6 0.8584 3.5027 -3.5910 18 6 0.4259 4.1416 -4.7343 19 6 -0.8429 4.6916 -4.7856 20 6 -1.6862 4.6044 -3.6923 21 6 -1.2682 3.9638 -2.5441 22 6 -2.1903 3.8648 -1.3562 23 7 -1.8910 4.9460 -0.4142 24 6 -2.7538 5.8583 0.0658 25 7 -2.0997 6.6473 0.8792 26 6 -0.8211 6.2768 0.9373 27 7 -0.6442 5.2392 0.1621 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.8293 -0.0617 2.9495 34 1 1.8490 3.0743 -3.5522 35 1 1.0794 4.2136 -5.5912 36 1 -1.1764 5.1912 -5.6831 37 1 -2.6754 5.0354 -3.7391 38 1 -3.2242 3.9501 -1.6906 39 1 -2.0460 2.9032 -0.8634 40 1 -3.8042 5.9266 -0.1759 41 1 -0.0550 6.7563 1.5285 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187922508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:08 Heat of formation + Delta-G solvation = 39.032812 kcal Electronic energy + Delta-G solvation = -26703.479967 eV Core-core repulsion = 22972.023972 eV Total energy + Delta-G solvation = -3731.455995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78893 -40.11014 -38.55356 -35.83018 -34.38004 -33.45238 -31.59149 -31.10479 -31.02260 -30.84703 -27.35344 -26.66898 -24.12971 -23.07428 -22.47459 -21.73383 -21.22971 -20.54180 -19.53305 -17.56996 -17.15932 -16.58501 -16.28911 -15.79601 -15.35063 -15.15475 -14.94918 -14.67019 -14.48169 -14.18439 -13.85575 -13.34469 -13.10152 -12.84233 -12.76199 -12.62517 -12.05341 -11.86218 -11.59555 -11.44681 -11.31033 -11.16820 -11.10980 -10.92325 -10.66089 -10.25674 -9.84375 -9.75107 -9.69329 -9.48451 -9.34675 -9.14684 -9.01953 -8.97105 -8.77000 -8.43150 -6.16672 -4.23180 0.78865 1.15354 1.94899 2.64075 3.13239 3.23878 3.25578 3.31012 3.34323 3.64306 3.95061 4.33836 4.35917 4.47363 4.55411 4.83838 4.89618 5.07208 5.12983 5.15737 5.31182 5.47745 5.52586 5.67788 5.74808 5.93961 6.19465 6.20700 6.26021 6.32655 6.37769 6.46383 6.50961 6.72042 6.75521 6.87471 6.97521 7.03078 7.16796 7.27518 7.63500 7.76481 7.97675 8.18252 8.35155 8.67123 8.92355 9.41874 10.90155 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.004586 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.053980 B = 6104.452195 C = 6949.284514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.226 3.774 4 H 0.049 0.951 5 C -0.519 4.519 6 H 0.067 0.933 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.353 6.353 14 C 0.494 3.506 15 O -0.488 6.488 16 C -0.077 4.077 17 C -0.068 4.068 18 C -0.122 4.122 19 C -0.102 4.102 20 C -0.116 4.116 21 C -0.062 4.062 22 C 0.161 3.839 23 N -0.357 5.357 24 C 0.234 3.766 25 N -0.551 5.551 26 C 0.176 3.824 27 N -0.269 5.269 28 H 0.030 0.970 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.108 0.892 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.212 0.788 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 7.416 -12.076 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.174 3.826 4 H 0.066 0.934 5 C -0.557 4.557 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.270 6.270 14 C 0.338 3.662 15 O -0.378 6.378 16 C -0.079 4.079 17 C -0.087 4.087 18 C -0.141 4.141 19 C -0.120 4.120 20 C -0.135 4.135 21 C -0.063 4.063 22 C 0.040 3.960 23 N -0.148 5.148 24 C -0.062 4.062 25 N -0.279 5.279 26 C -0.127 4.127 27 N -0.096 5.096 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.161 0.839 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.118 0.882 39 H 0.144 0.856 40 H 0.228 0.772 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -11.891 7.117 -11.511 18.015 hybrid contribution 0.709 -0.142 0.137 0.736 sum -11.182 6.975 -11.374 17.408 Atomic orbital electron populations 1.21846 0.98530 0.98873 1.00539 1.22020 0.92541 0.99520 1.03274 1.20633 0.94894 0.88484 0.78614 0.93365 1.21028 0.89742 1.38767 1.06185 0.91463 1.24858 0.99109 0.94806 0.95077 1.69887 1.35320 1.37924 1.09469 0.86314 0.84063 0.77685 0.78317 1.20411 1.20982 1.19634 1.86506 1.33745 1.62566 1.44151 1.20724 0.81408 0.77070 0.87034 1.90719 1.54678 1.57766 1.34611 1.19364 0.94300 1.00503 0.93755 1.21632 1.00030 0.95549 0.91452 1.21228 0.96298 0.98307 0.98239 1.21288 0.94004 0.98487 0.98205 1.20933 1.00292 0.99443 0.92817 1.19793 0.93877 0.97645 0.95008 1.20886 0.96967 0.91990 0.86163 1.50350 1.06692 1.23848 1.33862 1.25913 0.98500 0.87633 0.94185 1.70452 1.05701 1.29541 1.22194 1.26007 0.93835 0.93769 0.99062 1.78419 1.01426 1.16496 1.13280 0.95094 0.92872 0.94937 0.87383 0.94088 0.92450 0.83892 0.85235 0.85540 0.85456 0.88195 0.85642 0.77159 0.77281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.56 37.16 0.32 -2.70 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.49 16 3 C 0.23 5.97 2.25 -27.88 -0.06 5.91 16 4 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 5 C -0.52 -14.53 8.90 -34.44 -0.31 -14.84 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.16 11.29 55.43 0.63 -24.53 16 9 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 13 O -0.35 -8.34 9.07 -40.54 -0.37 -8.70 16 14 C 0.49 10.23 6.05 34.61 0.21 10.44 16 15 O -0.49 -10.62 8.47 -19.24 -0.16 -10.78 16 16 C -0.08 -1.28 5.87 -104.98 -0.62 -1.89 16 17 C -0.07 -0.99 9.62 -39.17 -0.38 -1.36 16 18 C -0.12 -1.35 10.03 -39.64 -0.40 -1.75 16 19 C -0.10 -0.99 10.04 -39.49 -0.40 -1.38 16 20 C -0.12 -1.20 9.66 -39.64 -0.38 -1.58 16 21 C -0.06 -0.83 5.38 -104.21 -0.56 -1.39 16 22 C 0.16 2.03 5.75 -5.19 -0.03 2.00 16 23 N -0.36 -5.28 3.56 -63.81 -0.23 -5.51 16 24 C 0.23 2.95 12.63 -90.65 -1.14 1.80 16 25 N -0.55 -8.44 11.19 -15.83 -0.18 -8.62 16 26 C 0.18 2.90 13.03 -91.81 -1.20 1.70 16 27 N -0.27 -4.99 10.36 29.29 0.30 -4.69 16 28 H 0.03 0.63 6.06 -51.93 -0.31 0.31 16 29 H 0.05 1.20 7.79 -51.93 -0.40 0.79 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.14 2.12 7.63 -52.49 -0.40 1.72 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.10 0.77 7.99 -51.93 -0.41 0.35 16 39 H 0.13 1.89 5.83 -51.92 -0.30 1.59 16 40 H 0.21 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.21 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -33.76 344.45 -10.04 -43.80 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.02 Total: 4.57 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -5.18 Total: -6.88 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.52 Total: -43.35 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.53 Total: -19.49 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.76 -10.04 -43.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187922508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.834 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds