Wall clock time and date at job start Tue Mar 31 2020 11:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34757 * 117.00320 * 270.00265 * 13 3 2 15 15 O 1.21521 * 119.99723 * 0.02562 * 14 13 3 16 16 C 1.47279 * 119.99939 * 179.97438 * 14 13 3 17 17 C 1.41425 * 126.41895 * 0.02788 * 16 14 13 18 18 N 1.30431 * 108.06710 * 179.97438 * 17 16 14 19 19 N 1.39932 * 108.94194 * 359.97438 * 18 17 16 20 20 C 1.39802 * 125.76788 * 180.02562 * 19 18 17 21 21 C 1.38950 * 119.69055 * 334.70304 * 20 19 18 22 22 C 1.38416 * 119.10414 * 179.73138 * 21 20 19 23 23 C 1.38797 * 118.48768 * 0.53001 * 22 21 20 24 24 C 1.38132 * 119.28990 * 359.73386 * 23 22 21 25 25 N 1.31889 * 120.84305 * 359.97438 * 24 23 22 26 26 C 1.34593 * 108.45990 * 359.72953 * 19 18 17 27 27 C 1.50705 * 126.31501 * 180.26864 * 26 19 18 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 34 34 H 1.07993 * 125.96803 * 359.97438 * 17 16 14 35 35 H 1.07995 * 120.44246 * 359.97438 * 21 20 19 36 36 H 1.08007 * 120.75642 * 180.28359 * 22 21 20 37 37 H 1.07994 * 120.35175 * 179.70784 * 23 22 21 38 38 H 1.07996 * 119.57872 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.46983 * 270.21436 * 27 26 19 40 40 H 1.09000 * 109.46904 * 30.20958 * 27 26 19 41 41 H 1.08994 * 109.46977 * 150.21294 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 8 1.6559 2.0916 1.2407 14 6 0.4680 2.7279 1.2561 15 8 -0.2279 2.7395 0.2600 16 6 0.0129 3.4082 2.4804 17 6 0.7089 3.4796 3.7095 18 7 -0.0182 4.1661 4.5469 19 7 -1.1971 4.5627 3.9056 20 6 -2.2258 5.3156 4.4794 21 6 -2.4086 5.2943 5.8566 22 6 -3.4274 6.0487 6.4123 23 6 -4.2379 6.7923 5.5658 24 6 -4.0020 6.7619 4.2051 25 7 -3.0195 6.0378 3.7052 26 6 -1.1700 4.1023 2.6412 27 6 -2.2362 4.3032 1.5952 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.8292 -0.0609 -2.9500 34 1 1.6739 3.0421 3.9183 35 1 -1.7619 4.7003 6.4853 36 1 -3.5905 6.0555 7.4800 37 1 -5.0446 7.3880 5.9667 38 1 -4.6300 7.3384 3.5421 39 1 -2.9579 3.4883 1.6507 40 1 -2.7443 5.2512 1.7718 41 1 -1.7774 4.3156 0.6066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187945724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:04 Heat of formation + Delta-G solvation = 14.483613 kcal Electronic energy + Delta-G solvation = -25640.707643 eV Core-core repulsion = 21908.187115 eV Total energy + Delta-G solvation = -3732.520528 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.02725 -41.20150 -40.68165 -37.50868 -35.49321 -34.97716 -33.79299 -33.30832 -33.09194 -30.81212 -29.39383 -28.52292 -25.70830 -24.96810 -24.91256 -23.73018 -22.33016 -21.65383 -20.78840 -19.28090 -18.68941 -17.88334 -17.62285 -17.31831 -17.18280 -16.76732 -16.44278 -16.33957 -15.64162 -15.25876 -15.01140 -14.78841 -14.69364 -14.40057 -14.07930 -13.87915 -13.81037 -13.38607 -13.33969 -13.28585 -13.05513 -12.88692 -12.79500 -12.52086 -12.21256 -12.10284 -11.71616 -11.56048 -11.41199 -11.20123 -11.01033 -10.77090 -10.60854 -10.49117 -10.17671 -9.56103 -8.24170 -6.40046 -0.53396 0.16059 0.50386 0.82491 0.96694 1.43782 1.44079 1.58000 2.08505 2.17541 2.45040 2.67766 3.05499 3.17256 3.30999 3.56720 3.81701 3.90315 4.00244 4.02935 4.15723 4.31338 4.40105 4.43966 4.44635 4.53849 4.62682 4.67694 4.85745 4.91828 4.95273 5.03947 5.12297 5.13611 5.21537 5.26627 5.42247 5.45123 5.55954 5.71676 5.86001 6.01793 6.12440 6.17319 6.65321 6.76339 7.07779 7.31807 8.83011 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028751 B = 0.002849 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.630917 B = 9824.648365 C =10228.763094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.227 3.773 4 H 0.009 0.991 5 C -0.546 4.546 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.277 1.277 13 O -0.357 6.357 14 C 0.531 3.469 15 O -0.542 6.542 16 C -0.298 4.298 17 C 0.122 3.878 18 N -0.298 5.298 19 N -0.317 5.317 20 C 0.321 3.679 21 C -0.163 4.163 22 C -0.049 4.049 23 C -0.159 4.159 24 C 0.120 3.880 25 N -0.523 5.523 26 C 0.186 3.814 27 C -0.102 4.102 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.270 0.730 34 H 0.224 0.776 35 H 0.144 0.856 36 H 0.181 0.819 37 H 0.185 0.815 38 H 0.198 0.802 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.824 12.079 17.737 27.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.174 3.826 4 H 0.026 0.974 5 C -0.584 4.584 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.188 1.188 11 H -0.197 1.197 12 H -0.203 1.203 13 O -0.273 6.273 14 C 0.378 3.622 15 O -0.434 6.434 16 C -0.310 4.310 17 C -0.067 4.067 18 N -0.114 5.114 19 N -0.092 5.092 20 C 0.097 3.903 21 C -0.185 4.185 22 C -0.075 4.075 23 C -0.179 4.179 24 C -0.038 4.038 25 N -0.236 5.236 26 C 0.057 3.943 27 C -0.160 4.160 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.240 0.760 35 H 0.162 0.838 36 H 0.198 0.802 37 H 0.203 0.797 38 H 0.215 0.785 39 H 0.110 0.890 40 H 0.135 0.865 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.977 12.467 17.601 27.449 hybrid contribution 1.143 -0.692 -0.705 1.510 sum -15.834 11.775 16.897 25.978 Atomic orbital electron populations 1.21697 0.96361 1.00413 1.00094 1.21856 0.94408 0.98090 1.02288 1.20386 0.94486 0.89230 0.78493 0.97366 1.21357 0.90488 1.39690 1.06832 0.91602 1.25778 1.04099 0.93977 0.94395 1.70018 1.37278 1.38085 1.09872 0.85179 0.77902 0.78275 0.78314 1.18834 1.19674 1.20266 1.86492 1.35052 1.63174 1.42587 1.20151 0.79762 0.75620 0.86707 1.90720 1.56137 1.60288 1.36279 1.19332 0.99700 1.16130 0.95803 1.24689 0.99769 0.93331 0.88906 1.77236 0.93029 1.20338 1.20841 1.45566 1.15219 1.40140 1.08259 1.18039 0.88553 0.93598 0.90082 1.21862 1.01307 1.02872 0.92471 1.22023 0.90951 0.91595 1.02914 1.22710 1.01385 1.00001 0.93791 1.23311 0.91712 0.93187 0.95563 1.66896 1.07262 1.08450 1.41006 1.21967 0.95588 0.90106 0.86686 1.20949 0.94832 1.05430 0.94784 0.94728 0.92162 0.94343 0.93619 0.89497 0.92085 0.75969 0.83848 0.80209 0.79747 0.78485 0.89041 0.86480 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.56 71.98 0.62 -5.22 16 2 C -0.13 -6.63 5.49 30.59 0.17 -6.46 16 3 C 0.23 12.69 2.25 29.85 0.07 12.76 16 4 H 0.01 0.53 7.16 -2.39 -0.02 0.52 16 5 C -0.55 -31.52 8.90 25.60 0.23 -31.29 16 6 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 7 C 0.02 0.96 5.29 84.66 0.45 1.40 16 8 N -0.91 -52.95 11.29 21.45 0.24 -52.71 16 9 Si 0.98 43.59 29.54 68.60 2.03 45.62 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 O -0.36 -17.94 9.65 -56.68 -0.55 -18.48 16 14 C 0.53 24.36 6.41 70.20 0.45 24.81 16 15 O -0.54 -26.56 12.03 19.77 0.24 -26.32 16 16 C -0.30 -11.31 6.13 -20.15 -0.12 -11.43 16 17 C 0.12 4.00 11.87 85.69 1.02 5.01 16 18 N -0.30 -9.30 12.00 -56.20 -0.67 -9.97 16 19 N -0.32 -9.68 3.73 -179.25 -0.67 -10.35 16 20 C 0.32 7.85 7.34 132.77 0.97 8.82 16 21 C -0.16 -2.92 9.73 22.48 0.22 -2.71 16 22 C -0.05 -0.45 10.17 22.45 0.23 -0.22 16 23 C -0.16 -1.07 10.11 22.38 0.23 -0.84 16 24 C 0.12 1.40 11.18 84.66 0.95 2.34 16 25 N -0.52 -11.09 7.57 -192.80 -1.46 -12.55 16 26 C 0.19 6.26 6.95 42.10 0.29 6.55 16 27 C -0.10 -3.00 9.41 71.24 0.67 -2.33 16 28 H 0.03 1.53 6.06 -2.39 -0.01 1.52 16 29 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.04 1.83 7.79 -2.38 -0.02 1.81 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.09 4.87 5.95 -2.39 -0.01 4.85 16 33 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.22 6.21 8.06 -2.91 -0.02 6.19 16 35 H 0.14 2.60 7.90 -2.91 -0.02 2.58 16 36 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 37 H 0.19 -0.26 8.06 -2.91 -0.02 -0.28 16 38 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.12 3.00 5.81 -2.39 -0.01 2.99 16 41 H 0.09 2.90 6.51 -2.39 -0.02 2.88 16 Total: -1.00 -74.27 346.85 6.64 -67.63 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.06 Total: 15.94 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 6.43 Total: 1.20 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -2.56 Total: -85.58 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.31 Total: -44.81 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -74.27 6.64 -67.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187945724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.111 kcal (2) G-P(sol) polarization free energy of solvation -74.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds