Wall clock time and date at job start Tue Mar 31 2020 11:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47234 * 2 1 4 4 H 1.08996 * 109.46843 * 305.00053 * 3 2 1 5 5 C 1.50701 * 109.46801 * 184.99930 * 3 2 1 6 6 H 1.07996 * 119.99678 * 239.99412 * 5 3 2 7 7 C 1.37870 * 119.99944 * 60.00696 * 5 3 2 8 8 N 1.31516 * 120.00331 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99941 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47317 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47211 * 119.99663 * 9 7 5 12 12 H 1.48493 * 109.47360 * 239.99382 * 9 7 5 13 13 O 1.45206 * 109.46970 * 65.00140 * 3 2 1 14 14 C 1.34753 * 116.99775 * 269.99887 * 13 3 2 15 15 O 1.21522 * 120.00358 * 0.02562 * 14 13 3 16 16 C 1.47373 * 120.00261 * 180.02562 * 14 13 3 17 17 C 1.36689 * 125.78169 * 180.02562 * 16 14 13 18 18 N 1.35041 * 106.79212 * 180.18958 * 17 16 14 19 19 C 1.40219 * 126.60839 * 179.76789 * 18 17 16 20 20 C 1.38833 * 120.06054 * 359.72533 * 19 18 17 21 21 C 1.38121 * 119.92924 * 179.74520 * 20 19 18 22 22 C 1.38283 * 120.06937 * 0.52402 * 21 20 19 23 23 C 1.50700 * 119.93668 * 179.70098 * 22 21 20 24 24 C 1.38281 * 120.12616 * 359.72785 * 22 21 20 25 25 C 1.38118 * 120.06663 * 0.02562 * 24 22 21 26 26 N 1.40213 * 106.78694 * 359.64418 * 18 17 16 27 27 N 1.28743 * 108.40816 * 0.36448 * 26 18 17 28 28 H 1.08992 * 109.47132 * 59.99573 * 1 2 3 29 29 H 1.08991 * 109.47468 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46869 * 300.00485 * 1 2 3 31 31 H 1.09000 * 109.47118 * 240.00006 * 2 1 3 32 32 H 1.09002 * 109.47053 * 119.99858 * 2 1 3 33 33 H 0.96996 * 120.00546 * 180.02562 * 8 7 5 34 34 H 1.08002 * 126.60112 * 359.91597 * 17 16 14 35 35 H 1.07997 * 120.03681 * 359.97438 * 20 19 18 36 36 H 1.08005 * 119.96944 * 180.22819 * 21 20 19 37 37 H 1.09001 * 109.47244 * 270.02572 * 23 22 21 38 38 H 1.09003 * 109.47083 * 30.02543 * 23 22 21 39 39 H 1.08996 * 109.46878 * 150.02154 * 23 22 21 40 40 H 1.08003 * 119.96386 * 179.97438 * 24 22 21 41 41 H 1.08001 * 120.02659 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5988 1.5471 -0.1947 11 1 6.4970 -0.5177 -1.4630 12 1 6.3991 1.6165 -2.6101 13 8 1.6559 2.0917 1.2408 14 6 0.4682 2.7279 1.2561 15 8 -0.2278 2.7396 0.2600 16 6 0.0131 3.4097 2.4808 17 6 -1.1648 4.0874 2.6276 18 7 -1.1882 4.5597 3.8925 19 6 -2.2080 5.3201 4.4824 20 6 -3.3344 5.6626 3.7467 21 6 -4.3397 6.4072 4.3321 22 6 -4.2201 6.8207 5.6463 23 6 -5.3157 7.6388 6.2799 24 6 -3.0969 6.4854 6.3799 25 6 -2.0907 5.7367 5.8014 26 7 0.0023 4.1408 4.5032 27 7 0.6861 3.4695 3.6433 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0617 -2.9496 34 1 -1.9277 4.2231 1.8752 35 1 -3.4263 5.3440 2.7189 36 1 -5.2180 6.6709 3.7615 37 1 -5.1175 8.6984 6.1189 38 1 -6.2727 7.3756 5.8292 39 1 -5.3495 7.4339 7.3499 40 1 -3.0061 6.8101 7.4059 41 1 -1.2136 5.4756 6.3749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187990619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:19 Heat of formation + Delta-G solvation = 33.517127 kcal Electronic energy + Delta-G solvation = -24971.008192 eV Core-core repulsion = 21239.313019 eV Total energy + Delta-G solvation = -3731.695173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.47913 -39.89267 -39.30251 -35.80681 -35.31934 -33.46093 -32.06809 -31.68438 -31.36814 -30.77761 -27.53771 -27.09971 -24.64906 -23.66983 -23.27385 -22.58418 -21.34545 -20.62667 -19.66832 -18.72143 -16.93854 -16.55896 -16.27925 -15.90688 -15.80828 -15.53883 -15.11873 -15.06083 -14.47427 -14.32200 -14.22819 -14.00464 -13.16110 -12.92678 -12.82226 -12.79042 -12.41217 -12.19746 -12.05797 -11.53570 -11.47410 -11.31909 -11.27747 -11.19439 -11.12966 -10.93559 -10.61842 -10.24805 -9.93026 -9.70906 -9.57371 -9.55370 -9.36448 -8.77613 -8.68726 -8.42325 -6.15105 -4.21182 0.15080 0.80039 1.46268 1.76917 1.77296 3.19853 3.27348 3.32858 3.36955 3.47802 3.51537 4.05730 4.18887 4.31240 4.36545 4.39499 4.52316 4.74564 4.79742 4.96184 5.01763 5.11338 5.15970 5.18654 5.26030 5.44763 5.50119 5.71122 5.84497 5.97275 6.03879 6.13827 6.25162 6.32599 6.47213 6.53116 6.88179 6.96507 7.18377 7.22170 7.63707 7.75479 7.83165 7.95783 8.18036 8.60830 8.91591 9.43602 10.91884 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031528 B = 0.002478 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.892396 B =11297.466489 C =11758.403976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.220 3.780 4 H 0.050 0.950 5 C -0.518 4.518 6 H 0.071 0.929 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.332 6.332 14 C 0.542 3.458 15 O -0.510 6.510 16 C -0.062 4.062 17 C 0.090 3.910 18 N -0.316 5.316 19 C 0.133 3.867 20 C -0.121 4.121 21 C -0.097 4.097 22 C -0.084 4.084 23 C -0.116 4.116 24 C -0.100 4.100 25 C -0.100 4.100 26 N -0.063 5.063 27 N -0.167 5.167 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.265 0.735 34 H 0.209 0.791 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.136 0.864 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.342 12.956 14.626 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.556 4.556 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.247 6.247 14 C 0.384 3.616 15 O -0.400 6.400 16 C -0.198 4.198 17 C -0.063 4.063 18 N -0.094 5.094 19 C 0.041 3.959 20 C -0.142 4.142 21 C -0.116 4.116 22 C -0.085 4.085 23 C -0.173 4.173 24 C -0.118 4.118 25 C -0.120 4.120 26 N -0.042 5.042 27 N -0.042 5.042 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.128 0.872 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.226 0.774 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.153 0.847 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.591 12.801 15.361 26.632 hybrid contribution 0.265 -0.118 -1.171 1.206 sum -17.326 12.682 14.190 25.737 Atomic orbital electron populations 1.21864 0.98431 0.99095 1.00663 1.22036 0.92622 0.99249 1.03548 1.20805 0.95261 0.88841 0.78295 0.93269 1.21094 0.89564 1.38712 1.06229 0.91070 1.24875 0.99266 0.94780 0.95049 1.69895 1.35270 1.38027 1.09516 0.86222 0.83901 0.77858 0.78209 1.19406 1.20731 1.20807 1.86646 1.32446 1.61557 1.44027 1.19258 0.81498 0.76367 0.84486 1.90823 1.55939 1.59401 1.33827 1.20763 0.94778 1.09448 0.94814 1.23299 0.99711 0.95482 0.87804 1.47651 1.16121 1.36334 1.09324 1.17616 0.87474 0.96902 0.93892 1.20982 0.92528 1.00163 1.00511 1.20909 0.98557 0.97466 0.94619 1.20113 0.96151 0.98040 0.94191 1.20830 0.96270 0.99290 1.00902 1.20990 0.92701 0.97757 1.00369 1.20978 1.00492 0.97891 0.92636 1.82106 0.89881 1.14883 1.17352 1.74853 1.21819 1.08235 0.99270 0.92726 0.94733 0.95055 0.87168 0.93784 0.92474 0.77416 0.84555 0.84586 0.90718 0.91162 0.91167 0.84656 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.56 37.16 0.32 -2.84 16 2 C -0.14 -3.44 5.49 -26.73 -0.15 -3.59 16 3 C 0.22 5.96 2.25 -27.88 -0.06 5.89 16 4 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 5 C -0.52 -14.79 8.90 -34.44 -0.31 -15.10 16 6 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.18 11.29 55.43 0.63 -24.55 16 9 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 O -0.33 -8.36 9.81 -40.63 -0.40 -8.76 16 14 C 0.54 11.89 6.41 34.45 0.22 12.11 16 15 O -0.51 -11.51 14.05 -19.28 -0.27 -11.78 16 16 C -0.06 -1.14 7.02 -83.56 -0.59 -1.73 16 17 C 0.09 1.24 10.60 -16.70 -0.18 1.07 16 18 N -0.32 -4.24 3.82 -10.42 -0.04 -4.28 16 19 C 0.13 1.38 6.69 -83.58 -0.56 0.82 16 20 C -0.12 -0.96 9.47 -39.40 -0.37 -1.34 16 21 C -0.10 -0.61 9.69 -39.61 -0.38 -0.99 16 22 C -0.08 -0.51 5.88 -104.59 -0.62 -1.12 16 23 C -0.12 -0.42 10.01 36.01 0.36 -0.06 16 24 C -0.10 -0.67 9.69 -39.61 -0.38 -1.05 16 25 C -0.10 -0.91 9.68 -39.41 -0.38 -1.29 16 26 N -0.06 -1.03 13.12 60.35 0.79 -0.23 16 27 N -0.17 -3.18 12.39 32.84 0.41 -2.77 16 28 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 31 H 0.11 2.98 5.95 -51.93 -0.31 2.67 16 32 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 34 H 0.21 2.09 7.13 -52.49 -0.37 1.72 16 35 H 0.14 0.86 6.81 -52.49 -0.36 0.50 16 36 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 39 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 40 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.14 1.31 7.73 -52.49 -0.41 0.91 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -32.60 352.43 -6.80 -39.41 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.04 Total: -1.16 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -3.17 Total: -7.58 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 1.78 Total: -31.84 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.67 Total: -20.54 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.60 -6.80 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187990619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.922 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds