Wall clock time and date at job start Tue Mar 31 2020 11:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47234 * 2 1 4 4 H 1.08996 * 109.46843 * 305.00053 * 3 2 1 5 5 C 1.50701 * 109.46801 * 184.99930 * 3 2 1 6 6 H 1.07996 * 119.99678 * 239.99412 * 5 3 2 7 7 C 1.37870 * 119.99944 * 60.00696 * 5 3 2 8 8 N 1.31516 * 120.00331 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99941 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47317 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47211 * 119.99663 * 9 7 5 12 12 H 1.48493 * 109.47360 * 239.99382 * 9 7 5 13 13 O 1.45206 * 109.46970 * 65.00140 * 3 2 1 14 14 C 1.34753 * 116.99775 * 269.99887 * 13 3 2 15 15 O 1.21522 * 120.00358 * 0.02562 * 14 13 3 16 16 C 1.47373 * 120.00261 * 180.02562 * 14 13 3 17 17 C 1.36689 * 125.78169 * 180.02562 * 16 14 13 18 18 N 1.35041 * 106.79212 * 180.18958 * 17 16 14 19 19 C 1.40219 * 126.60839 * 179.76789 * 18 17 16 20 20 C 1.38833 * 120.06054 * 359.72533 * 19 18 17 21 21 C 1.38121 * 119.92924 * 179.74520 * 20 19 18 22 22 C 1.38283 * 120.06937 * 0.52402 * 21 20 19 23 23 C 1.50700 * 119.93668 * 179.70098 * 22 21 20 24 24 C 1.38281 * 120.12616 * 359.72785 * 22 21 20 25 25 C 1.38118 * 120.06663 * 0.02562 * 24 22 21 26 26 N 1.40213 * 106.78694 * 359.64418 * 18 17 16 27 27 N 1.28743 * 108.40816 * 0.36448 * 26 18 17 28 28 H 1.08992 * 109.47132 * 59.99573 * 1 2 3 29 29 H 1.08991 * 109.47468 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46869 * 300.00485 * 1 2 3 31 31 H 1.09000 * 109.47118 * 240.00006 * 2 1 3 32 32 H 1.09002 * 109.47053 * 119.99858 * 2 1 3 33 33 H 0.96996 * 120.00546 * 180.02562 * 8 7 5 34 34 H 1.08002 * 126.60112 * 359.91597 * 17 16 14 35 35 H 1.07997 * 120.03681 * 359.97438 * 20 19 18 36 36 H 1.08005 * 119.96944 * 180.22819 * 21 20 19 37 37 H 1.09001 * 109.47244 * 270.02572 * 23 22 21 38 38 H 1.09003 * 109.47083 * 30.02543 * 23 22 21 39 39 H 1.08996 * 109.46878 * 150.02154 * 23 22 21 40 40 H 1.08003 * 119.96386 * 179.97438 * 24 22 21 41 41 H 1.08001 * 120.02659 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5988 1.5471 -0.1947 11 1 6.4970 -0.5177 -1.4630 12 1 6.3991 1.6165 -2.6101 13 8 1.6559 2.0917 1.2408 14 6 0.4682 2.7279 1.2561 15 8 -0.2278 2.7396 0.2600 16 6 0.0131 3.4097 2.4808 17 6 -1.1648 4.0874 2.6276 18 7 -1.1882 4.5597 3.8925 19 6 -2.2080 5.3201 4.4824 20 6 -3.3344 5.6626 3.7467 21 6 -4.3397 6.4072 4.3321 22 6 -4.2201 6.8207 5.6463 23 6 -5.3157 7.6388 6.2799 24 6 -3.0969 6.4854 6.3799 25 6 -2.0907 5.7367 5.8014 26 7 0.0023 4.1408 4.5032 27 7 0.6861 3.4695 3.6433 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0617 -2.9496 34 1 -1.9277 4.2231 1.8752 35 1 -3.4263 5.3440 2.7189 36 1 -5.2180 6.6709 3.7615 37 1 -5.1175 8.6984 6.1189 38 1 -6.2727 7.3756 5.8292 39 1 -5.3495 7.4339 7.3499 40 1 -3.0061 6.8101 7.4059 41 1 -1.2136 5.4756 6.3749 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187990619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:19 Heat of formation + Delta-G solvation = 14.953946 kcal Electronic energy + Delta-G solvation = -24971.813152 eV Core-core repulsion = 21239.313019 eV Total energy + Delta-G solvation = -3732.500133 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.67568 -41.21227 -40.42209 -37.68130 -36.23438 -35.48660 -33.38954 -32.88469 -32.34858 -31.87162 -29.36873 -27.96722 -26.05354 -24.97564 -24.53721 -23.73599 -22.18971 -22.17097 -21.31337 -19.96076 -18.76102 -18.24834 -17.62292 -17.38325 -16.75663 -16.55855 -16.48165 -16.36309 -15.97035 -15.02062 -14.97979 -14.76180 -14.71887 -14.57366 -14.08534 -13.70480 -13.54177 -13.35124 -13.27783 -13.13439 -13.04106 -12.84376 -12.77709 -12.54870 -12.43146 -12.14792 -12.08379 -12.02689 -11.78927 -11.63160 -11.39074 -10.83557 -10.78375 -10.52597 -10.12171 -9.43139 -8.27518 -6.43307 -0.73272 0.24618 0.25847 0.64846 0.75056 1.41416 1.42066 1.55629 1.83414 1.90860 2.39668 2.60986 2.98533 3.01670 3.24417 3.56667 3.69947 3.81377 3.88576 3.94762 4.25639 4.28986 4.39169 4.40761 4.42597 4.47640 4.59357 4.76476 4.83320 4.89918 4.98919 5.05041 5.09679 5.21210 5.21890 5.27901 5.33939 5.43290 5.51077 5.53921 5.66697 5.86339 5.90086 6.08708 6.52025 6.64445 6.92533 7.26899 8.79567 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031528 B = 0.002478 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.892396 B =11297.466489 C =11758.403976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C 0.224 3.776 4 H 0.018 0.982 5 C -0.551 4.551 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.979 3.021 10 H -0.270 1.270 11 H -0.270 1.270 12 H -0.273 1.273 13 O -0.351 6.351 14 C 0.542 3.458 15 O -0.523 6.523 16 C -0.096 4.096 17 C 0.118 3.882 18 N -0.297 5.297 19 C 0.089 3.911 20 C -0.117 4.117 21 C -0.098 4.098 22 C -0.074 4.074 23 C -0.117 4.117 24 C -0.103 4.103 25 C -0.110 4.110 26 N -0.074 5.074 27 N -0.205 5.205 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.272 0.728 34 H 0.249 0.751 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.158 0.842 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.648 14.349 15.432 29.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.035 0.965 5 C -0.588 4.588 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.803 3.197 10 H -0.194 1.194 11 H -0.195 1.195 12 H -0.198 1.198 13 O -0.266 6.266 14 C 0.385 3.615 15 O -0.412 6.412 16 C -0.232 4.232 17 C -0.036 4.036 18 N -0.074 5.074 19 C -0.001 4.001 20 C -0.137 4.137 21 C -0.116 4.116 22 C -0.074 4.074 23 C -0.173 4.173 24 C -0.121 4.121 25 C -0.130 4.130 26 N -0.054 5.054 27 N -0.078 5.078 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.265 0.735 35 H 0.172 0.828 36 H 0.183 0.817 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.175 0.825 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.928 14.215 16.205 29.356 hybrid contribution 0.731 -0.362 -1.288 1.525 sum -19.197 13.853 14.916 27.981 Atomic orbital electron populations 1.21719 0.95958 1.00818 1.00256 1.21886 0.94816 0.97822 1.02335 1.20534 0.94658 0.89503 0.78159 0.96452 1.21323 0.90561 1.40090 1.06868 0.92232 1.25737 1.04114 0.93818 0.94285 1.69991 1.37233 1.37800 1.09808 0.85189 0.77865 0.78402 0.78277 1.19389 1.19464 1.19785 1.86623 1.34554 1.62490 1.42973 1.19687 0.80294 0.75793 0.85704 1.90791 1.55863 1.59920 1.34663 1.20461 0.96898 1.12106 0.93776 1.23735 0.98557 0.92999 0.88343 1.47811 1.15639 1.35023 1.08938 1.18042 0.87996 0.99107 0.95004 1.21283 0.91660 0.99571 1.01201 1.21312 0.98885 0.96474 0.94935 1.20537 0.96118 0.96652 0.94120 1.20923 0.95743 0.99281 1.01403 1.21274 0.92253 0.97085 1.01505 1.21085 1.01023 0.98490 0.92386 1.82004 0.91056 1.15113 1.17193 1.74811 1.23309 1.09782 0.99937 0.93648 0.91863 0.94834 0.89055 0.94061 0.91889 0.73542 0.82827 0.81654 0.89712 0.89875 0.90259 0.82480 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.56 71.98 0.62 -5.16 16 2 C -0.13 -6.78 5.49 30.60 0.17 -6.62 16 3 C 0.22 12.69 2.25 29.85 0.07 12.76 16 4 H 0.02 1.09 7.16 -2.39 -0.02 1.07 16 5 C -0.55 -32.68 8.90 25.60 0.23 -32.46 16 6 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 7 C 0.02 1.16 5.29 84.65 0.45 1.60 16 8 N -0.91 -52.47 11.29 21.45 0.24 -52.22 16 9 Si 0.98 44.34 29.54 68.60 2.03 46.36 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 O -0.35 -18.56 9.81 -56.63 -0.56 -19.12 16 14 C 0.54 24.63 6.41 70.23 0.45 25.08 16 15 O -0.52 -24.14 14.05 19.76 0.28 -23.86 16 16 C -0.10 -3.60 7.02 40.78 0.29 -3.31 16 17 C 0.12 3.18 10.60 83.84 0.89 4.07 16 18 N -0.30 -7.81 3.82 -186.87 -0.71 -8.52 16 19 C 0.09 1.73 6.69 38.08 0.25 1.98 16 20 C -0.12 -1.52 9.47 22.38 0.21 -1.31 16 21 C -0.10 -0.86 9.69 22.25 0.22 -0.64 16 22 C -0.07 -0.63 5.88 -19.84 -0.12 -0.75 16 23 C -0.12 -0.36 10.01 71.24 0.71 0.35 16 24 C -0.10 -1.14 9.69 22.25 0.22 -0.92 16 25 C -0.11 -1.89 9.68 22.38 0.22 -1.68 16 26 N -0.07 -2.48 13.12 37.02 0.49 -2.00 16 27 N -0.20 -8.09 12.39 -50.02 -0.62 -8.71 16 28 H 0.04 2.07 7.79 -2.39 -0.02 2.05 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.03 1.44 6.06 -2.39 -0.01 1.43 16 31 H 0.09 5.09 5.95 -2.39 -0.01 5.07 16 32 H 0.04 2.10 8.14 -2.39 -0.02 2.09 16 33 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.25 4.36 7.13 -2.91 -0.02 4.34 16 35 H 0.15 1.39 6.81 -2.91 -0.02 1.37 16 36 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 37 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.08 0.10 8.08 -2.39 -0.02 0.08 16 39 H 0.08 0.15 8.08 -2.39 -0.02 0.13 16 40 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 41 H 0.13 2.48 7.73 -2.91 -0.02 2.45 16 Total: -1.00 -74.28 352.43 7.06 -67.21 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.06 Total: 7.85 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 4.86 Total: -6.99 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -0.60 Total: -71.45 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.28 Total: -42.98 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -74.28 7.06 -67.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187990619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.166 kcal (2) G-P(sol) polarization free energy of solvation -74.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds