Wall clock time and date at job start Tue Mar 31 2020 11:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 H 1.09000 * 109.47309 * 54.99639 * 3 2 1 5 5 C 1.50703 * 109.47206 * 175.00020 * 3 2 1 6 6 H 1.07998 * 120.00016 * 119.99939 * 5 3 2 7 7 C 1.37879 * 119.99746 * 299.99722 * 5 3 2 8 8 N 1.31513 * 120.00042 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99803 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46952 * 120.00136 * 9 7 5 12 12 H 1.48494 * 109.47139 * 240.00061 * 9 7 5 13 13 O 1.45205 * 109.47227 * 294.99765 * 3 2 1 14 14 C 1.34739 * 116.99696 * 89.99866 * 13 3 2 15 15 O 1.21492 * 120.00165 * 359.97438 * 14 13 3 16 16 C 1.47583 * 119.99679 * 180.02562 * 14 13 3 17 17 C 1.39769 * 120.03115 * 179.97438 * 16 14 13 18 18 C 1.37638 * 119.97192 * 179.97438 * 17 16 14 19 19 C 1.39513 * 120.03268 * 359.97438 * 18 17 16 20 20 C 1.48279 * 119.97426 * 180.02562 * 19 18 17 21 21 N 1.34027 * 125.65363 * 359.69259 * 20 19 18 22 22 C 1.30630 * 109.78605 * 180.26418 * 21 20 19 23 23 N 1.34575 * 108.31035 * 0.02562 * 22 21 20 24 24 C 1.46501 * 126.74222 * 180.02562 * 23 22 21 25 25 N 1.31554 * 125.65944 * 180.02562 * 20 19 18 26 26 C 1.39511 * 120.06005 * 0.28107 * 19 18 17 27 27 C 1.37658 * 120.02652 * 359.48288 * 26 19 18 28 28 H 1.09002 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47250 * 299.99829 * 1 2 3 30 30 H 1.09000 * 109.46800 * 60.00325 * 1 2 3 31 31 H 1.08996 * 109.47250 * 240.00171 * 2 1 3 32 32 H 1.08994 * 109.47189 * 119.99894 * 2 1 3 33 33 H 0.96996 * 120.00025 * 179.97438 * 8 7 5 34 34 H 1.08000 * 120.01367 * 359.97438 * 17 16 14 35 35 H 1.07998 * 119.98795 * 180.02562 * 18 17 16 36 36 H 1.08006 * 125.84722 * 179.97438 * 22 21 20 37 37 H 1.09000 * 109.46826 * 269.97996 * 24 23 22 38 38 H 1.08994 * 109.47343 * 29.98271 * 24 23 22 39 39 H 1.09005 * 109.46835 * 149.98597 * 24 23 22 40 40 H 1.07998 * 119.98785 * 179.73919 * 26 19 18 41 41 H 1.07998 * 120.00904 * 180.25562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8801 1.3812 10 1 6.5987 1.5453 0.1936 11 1 6.3999 1.6158 2.6092 12 1 6.4961 -0.5188 1.4628 13 8 1.6559 2.0917 -1.2408 14 6 0.4682 2.7278 -1.2561 15 8 -0.2276 2.7394 -0.2602 16 6 0.0121 3.4096 -2.4829 17 6 -1.2200 4.0692 -2.4998 18 6 -1.6439 4.7051 -3.6445 19 6 -0.8442 4.6919 -4.7876 20 6 -1.3019 5.3779 -6.0199 21 7 -2.4602 6.0368 -6.1629 22 6 -2.5498 6.5157 -7.3749 23 7 -1.4371 6.1712 -8.0490 24 6 -1.1183 6.5001 -9.4405 25 7 -0.6412 5.4354 -7.1560 26 6 0.3835 4.0294 -4.7739 27 6 0.8121 3.3968 -3.6289 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8292 -0.0617 2.9495 34 1 -1.8392 4.0800 -1.6150 35 1 -2.5958 5.2152 -3.6577 36 1 -3.3759 7.0892 -7.7690 37 1 -1.4950 5.7141 -10.0951 38 1 -1.5851 7.4486 -9.7058 39 1 -0.0375 6.5822 -9.5560 40 1 0.9997 4.0164 -5.6607 41 1 1.7644 2.8875 -3.6174 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188032082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:52 Heat of formation + Delta-G solvation = 7.263023 kcal Electronic energy + Delta-G solvation = -24871.957948 eV Core-core repulsion = 21139.124312 eV Total energy + Delta-G solvation = -3732.833637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.06017 -41.51650 -39.81908 -37.58141 -35.53416 -35.21949 -33.45485 -33.06612 -32.24945 -31.55547 -29.36446 -28.12924 -25.98545 -24.98200 -24.02376 -22.89207 -22.44602 -21.80834 -21.18374 -19.27032 -18.52006 -18.35743 -17.61617 -17.08349 -16.95642 -16.68102 -16.55048 -16.11061 -15.51425 -15.19883 -14.86097 -14.74992 -14.51901 -14.44880 -14.11694 -14.01805 -13.53205 -13.39341 -13.34565 -13.11566 -13.07288 -12.81896 -12.74403 -12.54349 -12.21808 -12.12259 -11.75918 -11.48167 -11.33044 -11.17642 -11.12967 -10.88982 -10.81701 -10.52688 -10.10746 -9.63972 -8.26716 -6.43185 -0.69888 0.30351 0.65856 1.39759 1.41992 1.42779 1.44023 1.56635 1.96726 2.04364 2.42034 2.81385 2.90494 3.02962 3.40807 3.74504 3.88032 3.92305 3.99549 4.23232 4.27209 4.38012 4.40241 4.45903 4.54021 4.57673 4.64333 4.73580 4.81798 4.90588 4.98466 5.08616 5.19251 5.21876 5.25254 5.29851 5.34884 5.41126 5.52239 5.67268 5.68897 5.91429 5.96020 6.10782 6.61079 6.95476 6.98624 7.27710 8.80473 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.002541 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.892605 B =11014.507200 C =11795.568094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.008 0.992 5 C -0.547 4.547 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.271 1.271 13 O -0.355 6.355 14 C 0.491 3.509 15 O -0.538 6.538 16 C -0.122 4.122 17 C -0.060 4.060 18 C -0.082 4.082 19 C 0.010 3.990 20 C 0.243 3.757 21 N -0.565 5.565 22 C 0.268 3.732 23 N -0.382 5.382 24 C 0.087 3.913 25 N -0.330 5.330 26 C -0.093 4.093 27 C -0.064 4.064 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.270 0.730 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.274 0.726 37 H 0.095 0.905 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 12.781 -24.529 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.026 0.974 5 C -0.585 4.585 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.805 3.195 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.196 1.196 13 O -0.272 6.272 14 C 0.337 3.663 15 O -0.430 6.430 16 C -0.124 4.124 17 C -0.079 4.079 18 C -0.101 4.101 19 C 0.007 3.993 20 C -0.036 4.036 21 N -0.292 5.292 22 C -0.028 4.028 23 N -0.173 5.173 24 C -0.053 4.053 25 N -0.160 5.160 26 C -0.113 4.113 27 C -0.082 4.082 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.289 0.711 37 H 0.113 0.887 38 H 0.151 0.849 39 H 0.108 0.892 40 H 0.168 0.832 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.249 12.433 -24.092 29.352 hybrid contribution 0.717 -0.117 0.538 0.904 sum -10.531 12.316 -23.553 28.589 Atomic orbital electron populations 1.21721 0.96360 1.00636 1.00087 1.21868 0.94413 0.98007 1.02427 1.20442 0.94674 0.89327 0.78434 0.97401 1.21342 0.90356 1.39879 1.06916 0.91565 1.25803 1.04235 0.93908 0.94360 1.70017 1.37352 1.37944 1.09887 0.85157 0.77718 0.78312 0.78350 1.18810 1.20206 1.19630 1.86517 1.35085 1.62912 1.42657 1.21656 0.79942 0.76218 0.88435 1.90752 1.55940 1.59704 1.36611 1.19461 0.97825 1.03054 0.92053 1.21272 0.93567 0.93805 0.99211 1.21175 1.00511 0.98280 0.90168 1.17875 0.94743 0.96832 0.89807 1.22167 0.90428 0.98130 0.92843 1.70452 1.20491 1.18043 1.20245 1.27018 0.92454 0.96511 0.86812 1.50746 1.14335 1.38968 1.13276 1.22427 1.04803 1.04400 0.73672 1.78179 1.18923 1.17840 1.01055 1.21205 0.95249 0.96346 0.98479 1.21474 0.99468 0.96355 0.90875 0.91919 0.94403 0.94667 0.93508 0.89376 0.92022 0.83765 0.82324 0.71062 0.88690 0.84886 0.89248 0.83159 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.56 71.98 0.62 -5.35 16 2 C -0.13 -6.68 5.49 30.59 0.17 -6.51 16 3 C 0.22 12.55 2.25 29.85 0.07 12.62 16 4 H 0.01 0.51 7.16 -2.39 -0.02 0.50 16 5 C -0.55 -31.58 8.90 25.60 0.23 -31.36 16 6 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.91 -52.93 11.29 21.45 0.24 -52.69 16 9 Si 0.98 43.51 29.54 68.60 2.03 45.54 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 O -0.36 -17.75 9.04 -56.49 -0.51 -18.26 16 14 C 0.49 22.17 6.34 70.29 0.45 22.61 16 15 O -0.54 -26.60 13.52 19.86 0.27 -26.33 16 16 C -0.12 -4.33 5.88 -20.07 -0.12 -4.45 16 17 C -0.06 -1.82 9.58 22.50 0.22 -1.61 16 18 C -0.08 -2.11 9.67 22.44 0.22 -1.90 16 19 C 0.01 0.27 5.88 -19.99 -0.12 0.15 16 20 C 0.24 6.07 7.77 137.40 1.07 7.14 16 21 N -0.56 -12.02 10.81 -193.13 -2.09 -14.11 16 22 C 0.27 3.16 12.64 180.37 2.28 5.44 16 23 N -0.38 -5.15 4.04 -373.64 -1.51 -6.66 16 24 C 0.09 0.22 11.53 127.77 1.47 1.70 16 25 N -0.33 -7.58 12.32 -52.39 -0.65 -8.22 16 26 C -0.09 -2.47 9.66 22.44 0.22 -2.26 16 27 C -0.06 -1.97 9.60 22.50 0.22 -1.75 16 28 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.04 1.81 7.79 -2.39 -0.02 1.79 16 30 H 0.03 1.55 6.06 -2.39 -0.01 1.54 16 31 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.09 4.94 5.95 -2.39 -0.01 4.92 16 33 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.14 4.25 7.64 -2.91 -0.02 4.22 16 35 H 0.16 3.52 7.82 -2.91 -0.02 3.50 16 36 H 0.27 -0.22 8.06 -2.91 -0.02 -0.24 16 37 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.13 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 40 H 0.15 3.52 7.82 -2.91 -0.02 3.49 16 41 H 0.15 4.48 7.60 -2.91 -0.02 4.45 16 Total: -1.00 -77.72 353.63 6.26 -71.46 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.05 Total: 13.43 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 7.42 Total: -4.14 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -4.00 Total: -81.68 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -0.24 Total: -44.60 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -77.72 6.26 -71.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188032082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.719 kcal (2) G-P(sol) polarization free energy of solvation -77.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds