Wall clock time and date at job start Tue Mar 31 2020 11:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47249 * 2 1 4 4 H 1.09003 * 109.46945 * 55.00688 * 3 2 1 5 5 C 1.50703 * 109.46991 * 175.00047 * 3 2 1 6 6 H 1.08006 * 119.99719 * 120.00245 * 5 3 2 7 7 C 1.37874 * 120.00055 * 300.00358 * 5 3 2 8 8 N 1.31512 * 120.00007 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99974 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47213 * 89.99552 * 9 7 5 11 11 H 1.48501 * 109.47000 * 209.99968 * 9 7 5 12 12 H 1.48504 * 109.46975 * 329.99770 * 9 7 5 13 13 N 1.46499 * 109.47352 * 294.99996 * 3 2 1 14 14 C 1.34780 * 119.99761 * 84.99889 * 13 3 2 15 15 O 1.21361 * 119.99924 * 0.02562 * 14 13 3 16 16 C 1.49348 * 119.99866 * 180.02562 * 14 13 3 17 17 O 1.21376 * 120.00142 * 359.97438 * 16 14 13 18 18 N 1.34780 * 119.99866 * 179.97438 * 16 14 13 19 19 C 1.39758 * 119.99689 * 174.48160 * 18 16 14 20 20 C 1.39047 * 120.00225 * 335.11893 * 19 18 16 21 21 C 1.38201 * 120.22947 * 179.76581 * 20 19 18 22 22 C 1.38025 * 120.23008 * 0.51822 * 21 20 19 23 23 C 1.39645 * 120.00317 * 359.73867 * 22 21 20 24 24 C 1.43195 * 120.11540 * 180.02562 * 23 22 21 25 25 N 9.48815 * 93.71797 * 165.89147 * 13 1 2 26 26 C 1.38640 * 119.99890 * 155.40161 * 19 18 16 27 27 C 1.50696 * 120.11629 * 359.95273 * 26 19 18 28 28 H 1.09005 * 109.47087 * 59.99522 * 1 2 3 29 29 H 1.08998 * 109.47627 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46958 * 300.00059 * 1 2 3 31 31 H 1.09005 * 109.46958 * 239.99941 * 2 1 3 32 32 H 1.08996 * 109.47260 * 120.00214 * 2 1 3 33 33 H 0.96998 * 119.99777 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00482 * 265.00146 * 13 3 2 35 35 H 0.96997 * 120.00222 * 354.48157 * 18 16 14 36 36 H 1.07999 * 119.88801 * 0.02562 * 20 19 18 37 37 H 1.08003 * 119.88335 * 180.23546 * 21 20 19 38 38 H 1.08003 * 119.99671 * 179.72210 * 22 21 20 39 39 H 1.09000 * 109.47642 * 90.00402 * 27 26 19 40 40 H 1.09008 * 109.47330 * 210.00419 * 27 26 19 41 41 H 1.08998 * 109.47238 * 329.99955 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0049 0.8810 1.3817 10 1 6.4417 2.1140 2.0848 11 1 6.4395 -0.3101 2.1547 12 1 6.6135 0.8414 0.0277 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3669 15 8 -0.3398 2.6327 -0.4334 16 6 0.0398 3.3317 -2.6432 17 8 0.8150 3.3639 -3.5766 18 7 -1.1777 3.8982 -2.7585 19 6 -1.5056 4.6218 -3.9083 20 6 -0.5010 5.2012 -4.6753 21 6 -0.8196 5.9136 -5.8159 22 6 -2.1380 6.0641 -6.1956 23 6 -3.1551 5.4908 -5.4295 24 6 -4.5237 5.6449 -5.8215 25 7 -5.6085 5.7706 -6.1316 26 6 -2.8331 4.7669 -4.2809 27 6 -3.9245 4.1446 -3.4486 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8293 -0.0612 2.9497 34 1 2.2719 2.1232 -1.9977 35 1 -1.8263 3.8037 -2.0435 36 1 0.5323 5.0905 -4.3811 37 1 -0.0345 6.3581 -6.4096 38 1 -2.3831 6.6254 -7.0852 39 1 -4.2509 4.8540 -2.6882 40 1 -4.7673 3.8856 -4.0895 41 1 -3.5447 3.2440 -2.9662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188816942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:01 Heat of formation + Delta-G solvation = -15.580337 kcal Electronic energy + Delta-G solvation = -25294.775702 eV Core-core repulsion = 21560.951503 eV Total energy + Delta-G solvation = -3733.824199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19685 -39.65761 -38.28816 -36.74689 -35.63219 -34.93036 -33.04703 -32.47716 -31.08269 -30.51908 -27.64921 -27.26107 -25.11792 -23.96709 -22.94274 -21.65576 -20.70414 -19.60183 -18.99934 -18.69931 -16.76896 -16.53937 -16.18442 -15.98148 -15.61580 -15.38056 -15.11644 -14.73465 -14.35988 -14.02749 -13.92430 -13.48430 -13.47073 -13.27339 -13.05319 -12.88418 -12.80380 -12.42986 -12.18192 -12.02704 -11.66971 -11.65391 -11.38714 -11.24194 -11.01929 -10.93232 -10.76003 -10.42038 -10.32535 -9.76279 -9.24060 -9.20630 -9.06547 -8.62418 -8.41027 -8.12386 -6.22950 -4.32967 0.45824 0.79528 1.72704 2.29085 2.53921 2.70161 3.20077 3.27360 3.29575 3.45621 3.56622 3.64714 3.92382 4.27261 4.34128 4.52124 4.70729 4.94313 5.00612 5.09406 5.14231 5.23431 5.24280 5.34958 5.71851 5.81694 5.90699 6.01799 6.10625 6.25044 6.29311 6.48291 6.55426 6.85595 6.89071 7.03136 7.06547 7.17839 7.19963 7.39993 7.56165 7.68029 7.75780 8.01752 8.33772 8.53109 8.78044 9.34173 10.82421 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.002743 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.752889 B =10207.197279 C =11009.027914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.538 4.538 6 H 0.065 0.935 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.665 5.665 14 C 0.494 3.506 15 O -0.527 6.527 16 C 0.508 3.492 17 O -0.501 6.501 18 N -0.648 5.648 19 C 0.153 3.847 20 C -0.098 4.098 21 C -0.103 4.103 22 C -0.086 4.086 23 C -0.016 4.016 24 C 0.262 3.738 25 N -0.420 5.420 26 C -0.067 4.067 27 C -0.127 4.127 28 H 0.034 0.966 29 H 0.027 0.973 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.266 0.734 34 H 0.402 0.598 35 H 0.425 0.575 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.822 8.540 -12.302 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.314 5.314 14 C 0.272 3.728 15 O -0.406 6.406 16 C 0.292 3.708 17 O -0.374 6.374 18 N -0.294 5.294 19 C 0.057 3.943 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.108 4.108 23 C -0.020 4.020 24 C -0.053 4.053 25 N -0.096 5.096 26 C -0.072 4.072 27 C -0.184 4.184 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.264 0.736 36 H 0.173 0.827 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.403 8.558 -12.484 18.366 hybrid contribution 1.353 -0.139 0.187 1.373 sum -9.050 8.420 -12.297 17.436 Atomic orbital electron populations 1.21858 0.98303 0.98495 1.00980 1.21969 0.92647 0.99357 1.02851 1.19042 0.94855 0.89404 0.80000 0.92667 1.21192 0.90243 1.39563 1.06622 0.91735 1.24870 0.98860 0.94549 0.95238 1.69876 1.35323 1.37330 1.09320 0.86407 0.84459 0.77714 0.78329 1.20479 1.21009 1.19717 1.46481 1.13346 1.52254 1.19304 1.19526 0.84672 0.81664 0.86927 1.90759 1.51188 1.59297 1.39352 1.21092 0.81527 0.78647 0.89562 1.90695 1.50823 1.56330 1.39564 1.43293 1.16559 1.50459 1.19073 1.17422 0.92372 0.95124 0.89370 1.21748 1.00888 0.94553 0.94658 1.20999 0.95906 0.98611 0.96622 1.21137 0.91860 0.98660 0.99114 1.15555 0.85503 1.03920 0.97019 1.25535 0.92612 0.93659 0.93510 1.81228 1.11494 1.08459 1.08375 1.19556 0.93407 0.99039 0.95182 1.20890 0.96506 1.01232 0.99757 0.94670 0.95419 0.92911 0.94606 0.87799 0.92390 0.76332 0.73592 0.82681 0.84385 0.84894 0.89905 0.90907 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.51 37.15 0.32 -2.50 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.07 16 3 C 0.27 6.25 2.24 -69.08 -0.15 6.10 16 4 H 0.06 1.47 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.45 8.73 -34.44 -0.30 -13.76 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.41 11.29 55.43 0.63 -22.79 16 9 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 N -0.67 -12.98 5.01 -55.39 -0.28 -13.26 16 14 C 0.49 8.81 6.45 -11.63 -0.08 8.73 16 15 O -0.53 -10.30 13.62 5.49 0.07 -10.22 16 16 C 0.51 7.49 7.69 -11.63 -0.09 7.40 16 17 O -0.50 -7.80 13.63 5.47 0.07 -7.73 16 18 N -0.65 -7.63 4.96 -10.33 -0.05 -7.68 16 19 C 0.15 1.63 6.40 -83.80 -0.54 1.09 16 20 C -0.10 -1.01 8.71 -39.29 -0.34 -1.35 16 21 C -0.10 -0.80 10.02 -39.67 -0.40 -1.20 16 22 C -0.09 -0.64 9.75 -39.13 -0.38 -1.02 16 23 C -0.02 -0.14 5.73 -106.97 -0.61 -0.75 16 24 C 0.26 2.64 13.79 -22.50 -0.31 2.32 16 25 N -0.42 -5.06 18.53 41.80 0.77 -4.29 16 26 C -0.07 -0.62 5.93 -103.99 -0.62 -1.23 16 27 C -0.13 -1.01 9.04 36.00 0.33 -0.69 16 28 H 0.03 0.68 5.65 -51.93 -0.29 0.39 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 1.12 7.85 -51.93 -0.41 0.72 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 33 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.40 7.31 8.01 -40.82 -0.33 6.98 16 35 H 0.43 4.48 6.87 -40.82 -0.28 4.20 16 36 H 0.16 1.80 5.77 -52.49 -0.30 1.49 16 37 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 38 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.59 7.09 -51.92 -0.37 0.22 16 41 H 0.08 0.60 6.98 -51.93 -0.36 0.24 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -28.22 349.99 -6.64 -34.86 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -4.70 Total: 9.31 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -3.42 Total: 1.73 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 1.07 Total: -48.01 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.15 Total: -17.95 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.22 -6.64 -34.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188816942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.277 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds