Wall clock time and date at job start Tue Mar 31 2020 11:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46887 * 2 1 4 4 H 1.09001 * 109.47089 * 55.00275 * 3 2 1 5 5 N 1.46496 * 109.47150 * 294.99761 * 3 2 1 6 6 C 1.39786 * 119.99791 * 99.49804 * 5 3 2 7 7 C 1.38952 * 120.00590 * 0.27661 * 6 5 3 8 8 C 1.38018 * 119.99232 * 180.25479 * 7 6 5 9 9 C 1.38901 * 120.00308 * 359.48590 * 8 7 6 10 10 O 1.35801 * 119.98924 * 180.25641 * 9 8 7 11 11 C 1.34813 * 116.99801 * 354.82655 * 10 9 8 12 12 H 1.07990 * 120.00473 * 5.04889 * 11 10 9 13 13 C 1.38628 * 119.99431 * 185.04510 * 11 10 9 14 14 N 1.31581 * 119.99749 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 119.99981 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47098 * 89.99940 * 15 13 11 17 17 H 1.48498 * 109.47119 * 209.99679 * 15 13 11 18 18 H 1.48501 * 109.47596 * 329.99914 * 15 13 11 19 19 C 1.38895 * 120.01199 * 0.23879 * 9 8 7 20 20 C 1.38010 * 120.00695 * 0.02562 * 19 9 8 21 21 C 1.50699 * 109.46761 * 174.99521 * 3 2 1 22 22 C 1.38228 * 120.00810 * 93.68040 * 21 3 2 23 23 C 1.38221 * 120.02085 * 179.71719 * 22 21 3 24 24 C 1.38267 * 120.05621 * 0.55048 * 23 22 21 25 25 C 1.38176 * 120.02188 * 359.72562 * 24 23 22 26 26 C 1.38436 * 120.01736 * 273.94647 * 21 3 2 27 27 F 1.35099 * 120.02418 * 0.03209 * 26 21 3 28 28 H 1.08999 * 109.47346 * 299.99779 * 1 2 3 29 29 H 1.09001 * 109.47013 * 59.99932 * 1 2 3 30 30 H 1.08998 * 109.46880 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47346 * 240.00220 * 2 1 3 32 32 H 1.09001 * 109.47013 * 120.00068 * 2 1 3 33 33 H 0.96993 * 120.00100 * 279.49540 * 5 3 2 34 34 H 1.07997 * 120.00716 * 0.02562 * 7 6 5 35 35 H 1.07998 * 119.99371 * 179.76975 * 8 7 6 36 36 H 0.97001 * 120.00011 * 180.02562 * 14 13 11 37 37 H 1.08003 * 119.99549 * 180.02562 * 19 9 8 38 38 H 1.08006 * 119.99980 * 180.02562 * 20 19 9 39 39 H 1.07995 * 119.98652 * 359.97438 * 22 21 3 40 40 H 1.08006 * 119.97351 * 180.27567 * 23 22 21 41 41 H 1.07992 * 119.99279 * 179.74090 * 24 23 22 42 42 H 1.08001 * 120.01126 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.5366 2.9388 -1.2841 7 6 -0.2017 3.1585 -0.1276 8 6 -1.3065 3.9851 -0.1610 9 6 -1.6740 4.6057 -1.3480 10 8 -2.7581 5.4231 -1.3793 11 6 -3.4953 5.5052 -0.2536 12 1 -3.1690 5.0006 0.6436 13 6 -4.6722 6.2377 -0.2479 14 7 -5.3916 6.3184 0.8509 15 14 -5.2369 7.1102 -1.8001 16 1 -6.0994 6.1988 -2.5942 17 1 -6.0071 8.3254 -1.4325 18 1 -4.0531 7.4999 -2.6075 19 6 -0.9328 4.3908 -2.5028 20 6 0.1688 3.5600 -2.4712 21 6 3.5418 1.4443 0.1240 22 6 4.3292 1.4872 -1.0114 23 6 5.7067 1.4948 -0.8978 24 6 6.2988 1.4479 0.3508 25 6 5.5139 1.3993 1.4868 26 6 4.1336 1.3975 1.3746 27 9 3.3651 1.3494 2.4847 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.1701 1.9474 -2.0582 34 1 0.0867 2.6796 0.7964 35 1 -1.8825 4.1529 0.7370 36 1 -6.2153 6.8306 0.8549 37 1 -1.2186 4.8738 -3.4256 38 1 0.7453 3.3933 -3.3692 39 1 3.8678 1.5190 -1.9873 40 1 6.3211 1.5328 -1.7853 41 1 7.3752 1.4497 0.4381 42 1 5.9766 1.3631 2.4620 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226665927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:04 Heat of formation + Delta-G solvation = -30.656183 kcal Electronic energy + Delta-G solvation = -25373.201126 eV Core-core repulsion = 21618.803228 eV Total energy + Delta-G solvation = -3754.397898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.92788 -41.05567 -40.28335 -38.88813 -36.90957 -34.39593 -33.31087 -32.23011 -31.73980 -31.39086 -29.15350 -27.20928 -26.50920 -24.00323 -23.75407 -23.26326 -22.43270 -21.20839 -19.85298 -19.23036 -18.67561 -17.85962 -17.38824 -16.84287 -16.64322 -16.38089 -16.27547 -15.80229 -15.58630 -15.35852 -15.22360 -15.04725 -14.73314 -14.35923 -14.17148 -14.06522 -13.93164 -13.68312 -13.36196 -13.28067 -13.05600 -12.92568 -12.70900 -12.44616 -12.34871 -12.21813 -11.98977 -11.82182 -11.72217 -11.15066 -11.00576 -10.36243 -9.91076 -9.79126 -9.60567 -8.43440 -8.00468 -6.11442 0.17801 0.26135 0.56963 0.88378 1.33384 1.38417 1.55117 2.32958 2.47953 2.66655 2.84640 3.16954 3.30167 3.31909 3.48877 3.78000 3.93989 4.06683 4.15251 4.17544 4.23166 4.33505 4.40419 4.46415 4.56533 4.62170 4.70547 4.79997 4.87160 4.92193 5.04029 5.09330 5.13040 5.17218 5.23494 5.31557 5.36973 5.40058 5.46305 5.48569 5.65204 5.82354 5.87483 5.95004 6.12660 6.52965 6.92243 7.01250 7.72426 8.69191 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.002861 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.247386 B = 9782.842985 C =10082.675485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.195 3.805 4 H 0.072 0.928 5 N -0.730 5.730 6 C 0.165 3.835 7 C -0.152 4.152 8 C -0.189 4.189 9 C 0.068 3.932 10 O -0.253 6.253 11 C -0.391 4.391 12 H 0.075 0.925 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.973 3.027 16 H -0.267 1.267 17 H -0.270 1.270 18 H -0.262 1.262 19 C -0.140 4.140 20 C -0.139 4.139 21 C -0.133 4.133 22 C -0.089 4.089 23 C -0.123 4.123 24 C -0.092 4.092 25 C -0.158 4.158 26 C 0.074 3.926 27 F -0.153 7.153 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.407 0.593 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.282 0.718 37 H 0.132 0.868 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.702 -13.881 -5.825 29.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.088 3.912 4 H 0.090 0.910 5 N -0.366 5.366 6 C 0.065 3.935 7 C -0.175 4.175 8 C -0.209 4.209 9 C 0.019 3.981 10 O -0.162 6.162 11 C -0.467 4.467 12 H 0.092 0.908 13 C -0.194 4.194 14 N -0.575 5.575 15 Si 0.796 3.204 16 H -0.192 1.192 17 H -0.195 1.195 18 H -0.186 1.186 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.135 4.135 22 C -0.107 4.107 23 C -0.141 4.141 24 C -0.110 4.110 25 C -0.177 4.177 26 C 0.055 3.945 27 F -0.132 7.132 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.246 0.754 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.150 0.850 38 H 0.176 0.824 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.179 0.821 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 25.422 -13.728 -5.690 29.446 hybrid contribution -0.971 0.428 0.517 1.181 sum 24.450 -13.300 -5.173 28.310 Atomic orbital electron populations 1.21758 0.95779 1.01670 1.01431 1.21891 0.95871 0.95161 1.02901 1.19560 0.89388 0.93912 0.88295 0.90963 1.44239 1.29921 1.51460 1.10946 1.17473 0.89440 0.93394 0.93215 1.20471 0.96634 1.02437 0.97934 1.21027 0.99982 1.02115 0.97752 1.19476 0.89752 0.93676 0.95161 1.83499 1.36208 1.59265 1.37229 1.20651 1.04182 1.33222 0.88682 0.90784 1.25283 0.94765 0.97888 1.01443 1.69760 1.15990 1.42805 1.28942 0.85172 0.78650 0.78155 0.78436 1.19155 1.19495 1.18584 1.20304 0.97078 1.02707 0.95867 1.20491 0.98231 0.99842 0.97504 1.20170 0.96129 1.04330 0.92864 1.21050 0.94061 0.97854 0.97716 1.21599 0.94403 0.98997 0.99052 1.21422 1.01483 0.96941 0.91145 1.21421 0.90875 1.03401 1.01981 1.17880 0.89799 1.04991 0.81874 1.91467 1.75888 1.94039 1.51776 0.94122 0.93191 0.91825 0.90135 0.91309 0.75432 0.86186 0.88019 0.90857 0.85010 0.82419 0.83577 0.82346 0.82119 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.69 71.98 0.63 -2.94 16 2 C -0.12 -2.40 5.59 30.60 0.17 -2.23 16 3 C 0.19 4.31 2.14 44.25 0.09 4.41 16 4 H 0.07 1.99 5.33 -2.39 -0.01 1.97 16 5 N -0.73 -15.98 4.67 -322.35 -1.51 -17.49 16 6 C 0.17 4.99 5.62 38.21 0.21 5.20 16 7 C -0.15 -5.63 8.08 22.39 0.18 -5.44 16 8 C -0.19 -8.72 9.16 22.38 0.20 -8.52 16 9 C 0.07 3.26 6.65 22.59 0.15 3.41 16 10 O -0.25 -14.21 8.58 -23.13 -0.20 -14.40 16 11 C -0.39 -23.92 9.94 67.91 0.68 -23.25 16 12 H 0.07 4.79 5.43 -2.92 -0.02 4.77 16 13 C 0.00 0.18 5.49 84.82 0.47 0.64 16 14 N -0.93 -57.86 13.96 21.61 0.30 -57.56 16 15 Si 0.97 47.03 28.61 68.60 1.96 48.99 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 19 C -0.14 -5.33 9.98 22.37 0.22 -5.10 16 20 C -0.14 -4.13 9.89 22.38 0.22 -3.91 16 21 C -0.13 -2.57 5.05 -19.82 -0.10 -2.67 16 22 C -0.09 -1.22 9.30 22.26 0.21 -1.02 16 23 C -0.12 -1.27 10.04 22.27 0.22 -1.04 16 24 C -0.09 -0.98 10.04 22.26 0.22 -0.76 16 25 C -0.16 -2.41 10.03 22.31 0.22 -2.19 16 26 C 0.07 1.54 7.24 22.38 0.16 1.70 16 27 F -0.15 -3.81 16.55 44.97 0.74 -3.06 16 28 H 0.04 1.08 7.48 -2.39 -0.02 1.06 16 29 H 0.05 1.35 6.69 -2.39 -0.02 1.34 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.41 6.51 6.60 -92.71 -0.61 5.90 16 34 H 0.12 4.14 5.18 -2.91 -0.02 4.13 16 35 H 0.10 5.24 5.63 -2.91 -0.02 5.22 16 36 H 0.28 16.06 8.31 -92.71 -0.77 15.28 16 37 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.15 1.43 6.15 -2.91 -0.02 1.41 16 40 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 42 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -72.11 348.17 5.92 -66.19 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.45 Total: 21.05 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 4.17 Total: -43.71 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -1.20 Total: -75.05 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.20 Total: -14.40 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.74 Total: -3.06 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.96 Total: 48.99 kcal Total: -72.11 5.92 -66.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226665927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.530 kcal (2) G-P(sol) polarization free energy of solvation -72.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds