Wall clock time and date at job start Tue Mar 31 2020 11:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 N 1.46501 * 109.47218 * 179.97438 * 16 14 13 18 18 N 1.39511 * 119.12096 * 269.72703 * 17 16 14 19 19 C 1.29974 * 122.69417 * 179.72636 * 18 17 16 20 20 C 1.46305 * 120.00968 * 0.53609 * 19 18 17 21 21 C 1.39617 * 121.85197 * 179.70953 * 20 19 18 22 22 C 1.36690 * 119.66946 * 180.02562 * 21 20 19 23 23 C 1.38898 * 120.91250 * 359.97438 * 22 21 20 24 24 C 1.37769 * 120.69954 * 0.02562 * 23 22 21 25 25 C 1.39426 * 119.39097 * 359.97438 * 24 23 22 26 26 C 1.34936 * 119.13053 * 89.99428 * 17 16 14 27 27 O 1.21816 * 120.62696 * 359.96051 * 26 17 16 28 28 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 30 30 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 31 31 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 32 32 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 33 33 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 35 35 H 1.09003 * 109.46719 * 299.99416 * 16 14 13 36 36 H 1.08991 * 109.47126 * 59.99074 * 16 14 13 37 37 H 1.07998 * 119.99560 * 180.29820 * 19 18 17 38 38 H 1.08004 * 120.16657 * 0.05634 * 21 20 19 39 39 H 1.07998 * 119.54181 * 179.97438 * 22 21 20 40 40 H 1.08005 * 119.64835 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.30482 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 7 -1.3228 3.8700 -2.5271 18 7 -2.4040 3.0641 -2.8847 19 6 -3.6375 3.4636 -2.7944 20 6 -3.9365 4.8122 -2.3123 21 6 -5.2465 5.2830 -2.2057 22 6 -5.4747 6.5514 -1.7501 23 6 -4.4203 7.3808 -1.3903 24 6 -3.1173 6.9433 -1.4849 25 6 -2.8606 5.6532 -1.9470 26 6 -1.4952 5.1285 -2.0719 27 8 -0.5361 5.8159 -1.7694 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.8292 -0.0558 2.9526 34 1 2.2719 2.1232 -1.9978 35 1 0.7275 4.1530 -2.8679 36 1 0.0672 2.6131 -3.4684 37 1 -4.4417 2.8013 -3.0789 38 1 -6.0756 4.6480 -2.4814 39 1 -6.4889 6.9136 -1.6689 40 1 -4.6240 8.3796 -1.0332 41 1 -2.3023 7.5935 -1.2030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273817834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:19 Heat of formation + Delta-G solvation = 0.215012 kcal Electronic energy + Delta-G solvation = -25876.354679 eV Core-core repulsion = 22143.215418 eV Total energy + Delta-G solvation = -3733.139261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05095 -39.16520 -38.23855 -37.02829 -35.05604 -33.33573 -32.36554 -31.69206 -30.99220 -30.62908 -28.20235 -26.60799 -24.49908 -24.00818 -22.89233 -22.19721 -20.56901 -19.35400 -18.78638 -18.58366 -17.40144 -17.00474 -16.04011 -15.63289 -15.54003 -15.24579 -14.97948 -14.82265 -14.59398 -14.15905 -14.04968 -13.63548 -13.19411 -13.00828 -12.66831 -12.58751 -12.39648 -12.37192 -11.80370 -11.69473 -11.34404 -11.23763 -11.00242 -10.94445 -10.81774 -10.30983 -10.17275 -9.92553 -9.78581 -9.60292 -9.41667 -9.06597 -9.01341 -8.48629 -8.35462 -7.81780 -6.10125 -4.19335 0.31119 0.66719 1.97180 2.06431 2.65828 3.26602 3.32912 3.34248 3.36624 3.65156 3.86382 4.12558 4.19951 4.36174 4.40807 4.53382 4.85468 4.94206 5.10486 5.21044 5.29150 5.31750 5.37150 5.48825 5.58024 5.65353 5.93167 6.02347 6.04275 6.12802 6.41141 6.45296 6.48351 6.68401 7.06280 7.21486 7.38660 7.46366 7.63117 7.66834 7.74971 7.92081 7.94912 8.19740 8.65882 8.79434 9.12469 9.47605 10.95338 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.003072 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.117831 B = 9111.422978 C = 9508.589834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.705 5.705 14 C 0.490 3.510 15 O -0.538 6.538 16 C 0.105 3.895 17 N -0.408 5.408 18 N -0.219 5.219 19 C 0.102 3.898 20 C -0.064 4.064 21 C -0.098 4.098 22 C -0.095 4.095 23 C -0.117 4.117 24 C -0.056 4.056 25 C -0.119 4.119 26 C 0.533 3.467 27 O -0.517 6.517 28 H 0.022 0.978 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.098 0.902 33 H 0.264 0.736 34 H 0.389 0.611 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.196 0.804 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 9.184 -12.471 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.353 5.353 14 C 0.273 3.727 15 O -0.416 6.416 16 C -0.020 4.020 17 N -0.226 5.226 18 N -0.026 5.026 19 C -0.104 4.104 20 C -0.067 4.067 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.136 4.136 24 C -0.075 4.075 25 C -0.125 4.125 26 C 0.324 3.676 27 O -0.391 6.391 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.212 0.788 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.887 8.701 -11.658 22.289 hybrid contribution 0.868 0.573 0.140 1.049 sum -16.019 9.274 -11.518 21.801 Atomic orbital electron populations 1.21825 0.98347 0.97955 1.01188 1.21926 0.92584 0.99760 1.02261 1.18785 0.94215 0.89106 0.80838 0.93431 1.21234 0.90655 1.39056 1.06243 0.92018 1.24894 0.98636 0.94806 0.95386 1.69903 1.35122 1.37772 1.09197 0.86446 0.84837 0.77618 0.78189 1.20579 1.21089 1.19823 1.46419 1.14217 1.55970 1.18739 1.20466 0.83315 0.79808 0.89090 1.90688 1.51421 1.59400 1.40064 1.21565 0.80424 1.01160 0.98850 1.48502 1.05014 1.10606 1.58478 1.74409 0.96413 1.20076 1.11688 1.24977 0.93418 0.93743 0.98220 1.19796 0.93983 0.94109 0.98846 1.20925 0.95134 0.96385 0.99351 1.21087 0.99637 0.93815 0.96770 1.21305 0.92054 1.00479 0.99788 1.21161 0.97733 0.93753 0.94815 1.20070 0.92083 0.96205 1.04142 1.18533 0.89691 0.81587 0.77821 1.90897 1.42048 1.57573 1.48602 0.95887 0.93396 0.94212 0.94962 0.88338 0.92589 0.77866 0.86144 0.86489 0.78771 0.84303 0.85041 0.84884 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.81 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 7.01 2.24 -69.08 -0.15 6.86 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -25.16 11.31 55.43 0.63 -24.54 16 9 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.93 5.02 -54.93 -0.28 -15.20 16 14 C 0.49 10.19 6.46 -10.99 -0.07 10.12 16 15 O -0.54 -13.32 13.57 5.55 0.08 -13.25 16 16 C 0.11 1.69 6.12 -5.19 -0.03 1.66 16 17 N -0.41 -6.79 2.99 -62.69 -0.19 -6.98 16 18 N -0.22 -3.14 11.38 31.91 0.36 -2.78 16 19 C 0.10 1.09 11.37 -15.10 -0.17 0.92 16 20 C -0.06 -0.70 5.89 -104.95 -0.62 -1.32 16 21 C -0.10 -0.74 9.81 -39.63 -0.39 -1.13 16 22 C -0.09 -0.66 9.96 -39.90 -0.40 -1.06 16 23 C -0.12 -0.98 10.01 -39.51 -0.40 -1.37 16 24 C -0.06 -0.65 9.67 -39.31 -0.38 -1.03 16 25 C -0.12 -1.67 5.90 -104.81 -0.62 -2.29 16 26 C 0.53 9.33 7.69 -12.73 -0.10 9.23 16 27 O -0.52 -10.40 16.14 5.08 0.08 -10.32 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 30 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 2.70 5.96 -51.93 -0.31 2.39 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.39 6.99 8.54 -40.82 -0.35 6.64 16 35 H 0.12 1.79 7.38 -51.93 -0.38 1.40 16 36 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.20 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 39 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.14 1.65 7.81 -52.49 -0.41 1.24 16 LS Contribution 347.84 15.07 5.24 5.24 Total: -1.00 -35.93 347.84 -7.69 -43.62 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.05 Total: 6.70 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -3.55 Total: 1.57 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.53 Total: -49.50 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.16 Total: -23.56 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.93 -7.69 -43.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273817834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.833 kcal (2) G-P(sol) polarization free energy of solvation -35.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds