Wall clock time and date at job start Tue Mar 31 2020 11:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 N 1.46501 * 109.47218 * 179.97438 * 16 14 13 18 18 N 1.39511 * 119.12096 * 269.72703 * 17 16 14 19 19 C 1.29974 * 122.69417 * 179.72636 * 18 17 16 20 20 C 1.46305 * 120.00968 * 0.53609 * 19 18 17 21 21 C 1.39617 * 121.85197 * 179.70953 * 20 19 18 22 22 C 1.36690 * 119.66946 * 180.02562 * 21 20 19 23 23 C 1.38898 * 120.91250 * 359.97438 * 22 21 20 24 24 C 1.37769 * 120.69954 * 0.02562 * 23 22 21 25 25 C 1.39426 * 119.39097 * 359.97438 * 24 23 22 26 26 C 1.34936 * 119.13053 * 89.99428 * 17 16 14 27 27 O 1.21816 * 120.62696 * 359.96051 * 26 17 16 28 28 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 30 30 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 31 31 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 32 32 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 33 33 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 35 35 H 1.09003 * 109.46719 * 299.99416 * 16 14 13 36 36 H 1.08991 * 109.47126 * 59.99074 * 16 14 13 37 37 H 1.07998 * 119.99560 * 180.29820 * 19 18 17 38 38 H 1.08004 * 120.16657 * 0.05634 * 21 20 19 39 39 H 1.07998 * 119.54181 * 179.97438 * 22 21 20 40 40 H 1.08005 * 119.64835 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.30482 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 7 -1.3228 3.8700 -2.5271 18 7 -2.4040 3.0641 -2.8847 19 6 -3.6375 3.4636 -2.7944 20 6 -3.9365 4.8122 -2.3123 21 6 -5.2465 5.2830 -2.2057 22 6 -5.4747 6.5514 -1.7501 23 6 -4.4203 7.3808 -1.3903 24 6 -3.1173 6.9433 -1.4849 25 6 -2.8606 5.6532 -1.9470 26 6 -1.4952 5.1285 -2.0719 27 8 -0.5361 5.8159 -1.7694 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.8292 -0.0558 2.9526 34 1 2.2719 2.1232 -1.9978 35 1 0.7275 4.1530 -2.8679 36 1 0.0672 2.6131 -3.4684 37 1 -4.4417 2.8013 -3.0789 38 1 -6.0756 4.6480 -2.4814 39 1 -6.4889 6.9136 -1.6689 40 1 -4.6240 8.3796 -1.0332 41 1 -2.3023 7.5935 -1.2030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273817834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:19 Heat of formation + Delta-G solvation = -25.695114 kcal Electronic energy + Delta-G solvation = -25877.478227 eV Core-core repulsion = 22143.215418 eV Total energy + Delta-G solvation = -3734.262809 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.11456 -40.66447 -39.36661 -38.11399 -36.95922 -34.52764 -34.28130 -32.89474 -32.43360 -31.54254 -29.72419 -28.36734 -25.36681 -25.29888 -24.61361 -23.02478 -22.29726 -21.24635 -19.79498 -19.57448 -19.04346 -18.16267 -17.74414 -17.17536 -16.54186 -16.53540 -16.47459 -16.25389 -15.74387 -15.61643 -14.94462 -14.77737 -14.63561 -14.47074 -14.19652 -14.04148 -13.63606 -13.38325 -13.19989 -13.09981 -13.04455 -12.89762 -12.71797 -12.60441 -12.19338 -12.09572 -11.94324 -11.62109 -11.17221 -11.08741 -10.88873 -10.58980 -10.42789 -10.15805 -9.70483 -9.43522 -8.18984 -6.36702 -0.52829 -0.11165 0.97229 1.09249 1.42278 1.43289 1.53918 1.70368 1.73385 2.33889 2.58762 2.85518 2.91987 3.10295 3.42934 3.63830 3.84300 3.88722 4.10459 4.15977 4.21831 4.32720 4.41408 4.45223 4.53703 4.57374 4.71812 4.80042 4.90922 4.98672 5.02210 5.21222 5.23212 5.35205 5.39272 5.40266 5.51594 5.57532 5.75325 5.81651 5.88622 6.13010 6.51289 6.70814 6.86756 6.91877 7.29495 7.49762 8.86647 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.003072 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.117831 B = 9111.422978 C = 9508.589834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.118 4.118 3 C 0.281 3.719 4 H -0.011 1.011 5 C -0.550 4.550 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.281 1.281 11 H -0.281 1.281 12 H -0.258 1.258 13 N -0.701 5.701 14 C 0.487 3.513 15 O -0.582 6.582 16 C 0.115 3.885 17 N -0.420 5.420 18 N -0.262 5.262 19 C 0.129 3.871 20 C -0.083 4.083 21 C -0.078 4.078 22 C -0.084 4.084 23 C -0.106 4.106 24 C -0.084 4.084 25 C -0.156 4.156 26 C 0.514 3.486 27 O -0.570 6.570 28 H 0.048 0.952 29 H 0.017 0.983 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.265 0.735 34 H 0.406 0.594 35 H 0.127 0.873 36 H 0.154 0.846 37 H 0.249 0.751 38 H 0.187 0.813 39 H 0.177 0.823 40 H 0.162 0.838 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.437 9.149 -14.448 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.157 4.157 3 C 0.177 3.823 4 H 0.007 0.993 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.207 1.207 11 H -0.207 1.207 12 H -0.182 1.182 13 N -0.350 5.350 14 C 0.272 3.728 15 O -0.463 6.463 16 C -0.010 4.010 17 N -0.235 5.235 18 N -0.069 5.069 19 C -0.076 4.076 20 C -0.087 4.087 21 C -0.098 4.098 22 C -0.102 4.102 23 C -0.125 4.125 24 C -0.103 4.103 25 C -0.162 4.162 26 C 0.308 3.692 27 O -0.449 6.449 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.242 0.758 35 H 0.145 0.855 36 H 0.172 0.828 37 H 0.265 0.735 38 H 0.204 0.796 39 H 0.194 0.806 40 H 0.180 0.820 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.703 8.652 -13.696 25.508 hybrid contribution 1.460 0.689 0.784 1.794 sum -18.243 9.341 -12.912 24.224 Atomic orbital electron populations 1.21637 0.97037 0.99094 0.99901 1.21756 0.93635 0.98826 1.01486 1.18360 0.93723 0.89227 0.80967 0.99300 1.21588 0.91290 1.39101 1.06800 0.90935 1.25809 1.03544 0.94300 0.94946 1.70061 1.37146 1.38458 1.09724 0.85343 0.78858 0.77392 0.78733 1.20691 1.20681 1.18214 1.46177 1.15085 1.55910 1.17877 1.21311 0.82332 0.78841 0.90282 1.90656 1.52644 1.60869 1.42105 1.21499 0.81240 1.01688 0.96614 1.48562 1.05796 1.10574 1.58618 1.74484 0.97149 1.20178 1.15072 1.25998 0.93379 0.94051 0.94170 1.20056 0.94812 0.94014 0.99815 1.21503 0.94459 0.97051 0.96799 1.21669 1.01120 0.93143 0.94295 1.21714 0.90757 1.01982 0.98009 1.21236 0.99233 0.93290 0.96553 1.20182 0.91185 0.97880 1.06983 1.19287 0.90956 0.81836 0.77153 1.90829 1.43769 1.58976 1.51329 0.93312 0.96361 0.93773 0.93522 0.91037 0.92571 0.75830 0.85527 0.82841 0.73526 0.79577 0.80553 0.82048 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.02 16 2 C -0.12 -6.02 5.45 30.60 0.17 -5.85 16 3 C 0.28 15.12 2.24 44.24 0.10 15.22 16 4 H -0.01 -0.71 7.58 -2.39 -0.02 -0.73 16 5 C -0.55 -30.20 8.73 25.60 0.22 -29.97 16 6 H 0.07 3.73 7.74 -2.92 -0.02 3.70 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -54.01 11.31 21.45 0.24 -53.77 16 9 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 13 N -0.70 -30.68 5.02 -446.09 -2.24 -32.92 16 14 C 0.49 21.14 6.46 87.66 0.57 21.71 16 15 O -0.58 -30.55 13.57 -3.05 -0.04 -30.59 16 16 C 0.12 3.80 6.12 85.63 0.52 4.32 16 17 N -0.42 -14.47 2.99 -470.34 -1.41 -15.87 16 18 N -0.26 -7.35 11.38 -52.95 -0.60 -7.95 16 19 C 0.13 2.42 11.37 87.07 0.99 3.41 16 20 C -0.08 -1.66 5.89 -20.08 -0.12 -1.78 16 21 C -0.08 -0.79 9.81 22.24 0.22 -0.57 16 22 C -0.08 -0.75 9.96 22.07 0.22 -0.53 16 23 C -0.11 -1.50 10.01 22.32 0.22 -1.27 16 24 C -0.08 -2.03 9.67 22.44 0.22 -1.81 16 25 C -0.16 -4.52 5.90 -19.98 -0.12 -4.64 16 26 C 0.51 19.29 7.69 86.46 0.67 19.95 16 27 O -0.57 -25.20 16.14 -4.72 -0.08 -25.28 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.02 0.92 7.85 -2.39 -0.02 0.90 16 30 H 0.04 2.02 5.64 -2.39 -0.01 2.00 16 31 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 4.06 5.96 -2.39 -0.01 4.05 16 33 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.41 14.75 8.54 -92.71 -0.79 13.96 16 35 H 0.13 3.97 7.38 -2.39 -0.02 3.95 16 36 H 0.15 3.80 8.14 -2.39 -0.02 3.78 16 37 H 0.25 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.19 0.14 8.06 -2.91 -0.02 0.12 16 39 H 0.18 0.11 8.06 -2.91 -0.02 0.08 16 40 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 41 H 0.12 3.25 7.81 -2.91 -0.02 3.22 16 Total: -1.00 -87.18 347.84 3.12 -84.06 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.28 Total: 22.54 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 4.94 Total: 14.39 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -4.01 Total: -110.52 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -0.12 Total: -55.87 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -87.18 3.12 -84.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273817834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.367 kcal (2) G-P(sol) polarization free energy of solvation -87.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds