Wall clock time and date at job start Tue Mar 31 2020 11:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46814 * 2 1 4 4 H 1.08995 * 109.47578 * 55.00211 * 3 2 1 5 5 C 1.50704 * 109.47365 * 175.00545 * 3 2 1 6 6 H 1.07994 * 120.00352 * 119.99827 * 5 3 2 7 7 C 1.37884 * 119.99614 * 299.99944 * 5 3 2 8 8 N 1.31515 * 119.99753 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00204 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47288 * 89.99688 * 9 7 5 11 11 H 1.48501 * 109.47560 * 210.00177 * 9 7 5 12 12 H 1.48501 * 109.46932 * 330.00058 * 9 7 5 13 13 N 1.46502 * 109.47178 * 295.00067 * 3 2 1 14 14 C 1.34776 * 119.99964 * 85.00335 * 13 3 2 15 15 O 1.21572 * 120.00053 * 359.97438 * 14 13 3 16 16 C 1.47625 * 119.99931 * 180.02562 * 14 13 3 17 17 C 1.39456 * 120.22604 * 51.89139 * 16 14 13 18 18 C 1.37975 * 119.99155 * 179.97438 * 17 16 14 19 19 C 1.38533 * 120.45026 * 359.97438 * 18 17 16 20 20 C 1.37998 * 120.44659 * 0.02562 * 19 18 17 21 21 C 1.39409 * 119.99740 * 359.97438 * 20 19 18 22 22 C 1.47653 * 120.21920 * 179.97438 * 21 20 19 23 23 N 1.31301 * 126.37934 * 186.14332 * 22 21 20 24 24 N 1.28664 * 109.23178 * 180.02562 * 23 22 21 25 25 C 1.30483 * 109.50804 * 359.97438 * 24 23 22 26 26 C 1.50705 * 126.17733 * 180.02562 * 25 24 23 27 27 O 1.34325 * 107.64839 * 359.74173 * 25 24 23 28 28 H 1.09001 * 109.47040 * 299.99304 * 1 2 3 29 29 H 1.08994 * 109.47596 * 60.00192 * 1 2 3 30 30 H 1.09005 * 109.46642 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47051 * 239.99914 * 2 1 3 32 32 H 1.08995 * 109.47398 * 120.00321 * 2 1 3 33 33 H 0.97002 * 119.99630 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00249 * 265.00228 * 13 3 2 35 35 H 1.08000 * 120.00198 * 359.95898 * 17 16 14 36 36 H 1.07998 * 119.77336 * 180.02562 * 18 17 16 37 37 H 1.07996 * 119.77664 * 180.02562 * 19 18 17 38 38 H 1.08004 * 119.99734 * 180.28063 * 20 19 18 39 39 H 1.09010 * 109.46838 * 89.97761 * 26 25 24 40 40 H 1.08998 * 109.47410 * 209.97755 * 26 25 24 41 41 H 1.09003 * 109.47249 * 329.98751 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3375 2.1732 9 14 6.0050 0.8802 1.3810 10 1 6.4428 2.1131 2.0835 11 1 6.4392 -0.3109 2.1544 12 1 6.6130 0.8397 0.0268 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4321 16 6 0.0442 3.3239 -2.6285 17 6 0.1685 2.6478 -3.8419 18 6 -0.1987 3.2687 -5.0181 19 6 -0.6924 4.5630 -5.0044 20 6 -0.8230 5.2490 -3.8141 21 6 -0.4577 4.6396 -2.6147 22 6 -0.5949 5.3692 -1.3384 23 7 -0.1865 4.9600 -0.1595 24 7 -0.4738 5.8523 0.7218 25 6 -1.0716 6.8583 0.1445 26 6 -1.5694 8.1071 0.8256 27 8 -1.1576 6.5826 -1.1673 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8294 -0.0609 2.9498 34 1 2.2717 2.1232 -1.9978 35 1 0.5524 1.6385 -3.8609 36 1 -0.1013 2.7417 -5.9557 37 1 -0.9769 5.0383 -5.9314 38 1 -1.2130 6.2562 -3.8114 39 1 -0.7789 8.8577 0.8310 40 1 -2.4345 8.4943 0.2873 41 1 -1.8546 7.8726 1.8512 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273856167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:55 Heat of formation + Delta-G solvation = 39.170356 kcal Electronic energy + Delta-G solvation = -26396.275635 eV Core-core repulsion = 22664.825605 eV Total energy + Delta-G solvation = -3731.450031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.91850 -39.83281 -38.01666 -35.94884 -34.90835 -33.36560 -32.36745 -31.51746 -31.29727 -30.37204 -27.84631 -26.85290 -24.59235 -23.50784 -22.98730 -22.22421 -21.66082 -20.25402 -19.21574 -18.05374 -17.26858 -17.18459 -16.31559 -15.85052 -15.43674 -15.23309 -14.80551 -14.41699 -14.23648 -14.01839 -13.79284 -13.52952 -13.11958 -12.97074 -12.86015 -12.58374 -12.15723 -12.05452 -11.84319 -11.60756 -11.46614 -11.21907 -11.15851 -10.87743 -10.76479 -10.53961 -10.23748 -10.14646 -10.08373 -9.52921 -9.13587 -8.95031 -8.85749 -8.50411 -8.38267 -7.64760 -6.02168 -4.10493 0.41624 1.04225 1.68951 2.25052 2.73405 3.30952 3.37153 3.38515 3.40676 3.76760 3.84027 4.13749 4.39984 4.44257 4.63925 4.79684 4.90536 5.09941 5.11371 5.22811 5.28715 5.32438 5.35937 5.47080 5.53834 5.71117 5.80424 5.81236 6.14966 6.21886 6.22401 6.47732 6.54629 6.61565 6.75715 7.12710 7.32096 7.47916 7.59688 7.72496 7.84296 8.04148 8.28971 8.55807 8.78682 8.89436 9.26747 9.56180 11.03344 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.004617 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.625885 B = 6063.211835 C = 7224.083723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.273 3.727 4 H 0.054 0.946 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.539 3.461 15 O -0.504 6.504 16 C -0.067 4.067 17 C -0.093 4.093 18 C -0.100 4.100 19 C -0.113 4.113 20 C -0.092 4.092 21 C 0.015 3.985 22 C 0.183 3.817 23 N -0.207 5.207 24 N -0.278 5.278 25 C 0.147 3.853 26 C -0.053 4.053 27 O -0.228 6.228 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.263 0.737 34 H 0.386 0.614 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.416 11.972 -13.523 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.072 0.928 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.322 3.678 15 O -0.380 6.380 16 C -0.072 4.072 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.131 4.131 20 C -0.112 4.112 21 C 0.012 3.988 22 C -0.024 4.024 23 N -0.054 5.054 24 N -0.128 5.128 25 C -0.062 4.062 26 C -0.111 4.111 27 O -0.108 6.108 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.218 0.782 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.421 11.102 -11.644 18.643 hybrid contribution 0.741 0.749 -1.176 1.579 sum -8.679 11.851 -12.820 19.497 Atomic orbital electron populations 1.21839 0.98422 0.97855 1.01281 1.21933 0.92532 0.99894 1.02154 1.18784 0.94054 0.88919 0.81061 0.92810 1.21225 0.90807 1.38668 1.06194 0.92260 1.24861 0.98376 0.94957 0.95420 1.69902 1.34958 1.37780 1.09289 0.86493 0.85190 0.77563 0.78095 1.20651 1.21140 1.19930 1.46385 1.13995 1.55772 1.18578 1.17819 0.83902 0.79894 0.86192 1.90817 1.51239 1.57730 1.38184 1.20441 0.98252 0.92599 0.95935 1.21328 0.98747 1.00529 0.90565 1.21305 0.97343 0.94931 0.98331 1.21136 0.99533 0.94851 0.97598 1.21142 0.98866 1.00200 0.91000 1.17081 1.02877 0.92123 0.86715 1.25390 0.97851 0.82148 0.97029 1.75399 1.15987 1.18618 0.95392 1.74645 1.13264 0.98751 1.26112 1.28075 0.99738 1.00413 0.77956 1.20302 1.02112 0.88422 1.00258 1.84720 1.63124 1.33622 1.29342 0.93061 0.94417 0.96006 0.95163 0.88320 0.92680 0.78242 0.84178 0.84876 0.84957 0.84925 0.88510 0.89210 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 7.12 2.24 -69.08 -0.15 6.97 16 4 H 0.05 1.66 7.58 -51.93 -0.39 1.27 16 5 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -25.43 11.29 55.43 0.63 -24.80 16 9 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.70 -15.20 4.99 -55.95 -0.28 -15.48 16 14 C 0.54 11.42 4.72 -12.43 -0.06 11.36 16 15 O -0.50 -12.51 11.53 5.30 0.06 -12.45 16 16 C -0.07 -1.13 5.69 -104.64 -0.59 -1.72 16 17 C -0.09 -1.18 9.65 -39.22 -0.38 -1.56 16 18 C -0.10 -0.96 10.02 -39.57 -0.40 -1.36 16 19 C -0.11 -1.04 10.02 -39.56 -0.40 -1.43 16 20 C -0.09 -1.07 9.72 -39.23 -0.38 -1.45 16 21 C 0.01 0.23 5.90 -104.64 -0.62 -0.39 16 22 C 0.18 3.35 7.75 -13.94 -0.11 3.24 16 23 N -0.21 -4.56 8.50 32.04 0.27 -4.29 16 24 N -0.28 -5.56 12.22 32.58 0.40 -5.16 16 25 C 0.15 2.20 8.47 -12.85 -0.11 2.09 16 26 C -0.05 -0.44 10.51 36.01 0.38 -0.06 16 27 O -0.23 -3.53 10.68 4.16 0.04 -3.49 16 28 H 0.05 1.28 7.84 -51.93 -0.41 0.87 16 29 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.39 7.35 8.43 -40.82 -0.34 7.01 16 35 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.13 1.26 7.94 -52.48 -0.42 0.84 16 39 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -35.41 347.07 -6.80 -42.21 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.09 Total: 5.46 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -3.04 Total: -3.43 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 1.02 Total: -49.72 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.11 Total: -15.93 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.41 -6.80 -42.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273856167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.380 kcal (2) G-P(sol) polarization free energy of solvation -35.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds