Wall clock time and date at job start Tue Mar 31 2020 11:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46814 * 2 1 4 4 H 1.08995 * 109.47578 * 55.00211 * 3 2 1 5 5 C 1.50704 * 109.47365 * 175.00545 * 3 2 1 6 6 H 1.07994 * 120.00352 * 119.99827 * 5 3 2 7 7 C 1.37884 * 119.99614 * 299.99944 * 5 3 2 8 8 N 1.31515 * 119.99753 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00204 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47288 * 89.99688 * 9 7 5 11 11 H 1.48501 * 109.47560 * 210.00177 * 9 7 5 12 12 H 1.48501 * 109.46932 * 330.00058 * 9 7 5 13 13 N 1.46502 * 109.47178 * 295.00067 * 3 2 1 14 14 C 1.34776 * 119.99964 * 85.00335 * 13 3 2 15 15 O 1.21572 * 120.00053 * 359.97438 * 14 13 3 16 16 C 1.47625 * 119.99931 * 180.02562 * 14 13 3 17 17 C 1.39456 * 120.22604 * 51.89139 * 16 14 13 18 18 C 1.37975 * 119.99155 * 179.97438 * 17 16 14 19 19 C 1.38533 * 120.45026 * 359.97438 * 18 17 16 20 20 C 1.37998 * 120.44659 * 0.02562 * 19 18 17 21 21 C 1.39409 * 119.99740 * 359.97438 * 20 19 18 22 22 C 1.47653 * 120.21920 * 179.97438 * 21 20 19 23 23 N 1.31301 * 126.37934 * 186.14332 * 22 21 20 24 24 N 1.28664 * 109.23178 * 180.02562 * 23 22 21 25 25 C 1.30483 * 109.50804 * 359.97438 * 24 23 22 26 26 C 1.50705 * 126.17733 * 180.02562 * 25 24 23 27 27 O 1.34325 * 107.64839 * 359.74173 * 25 24 23 28 28 H 1.09001 * 109.47040 * 299.99304 * 1 2 3 29 29 H 1.08994 * 109.47596 * 60.00192 * 1 2 3 30 30 H 1.09005 * 109.46642 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47051 * 239.99914 * 2 1 3 32 32 H 1.08995 * 109.47398 * 120.00321 * 2 1 3 33 33 H 0.97002 * 119.99630 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00249 * 265.00228 * 13 3 2 35 35 H 1.08000 * 120.00198 * 359.95898 * 17 16 14 36 36 H 1.07998 * 119.77336 * 180.02562 * 18 17 16 37 37 H 1.07996 * 119.77664 * 180.02562 * 19 18 17 38 38 H 1.08004 * 119.99734 * 180.28063 * 20 19 18 39 39 H 1.09010 * 109.46838 * 89.97761 * 26 25 24 40 40 H 1.08998 * 109.47410 * 209.97755 * 26 25 24 41 41 H 1.09003 * 109.47249 * 329.98751 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3375 2.1732 9 14 6.0050 0.8802 1.3810 10 1 6.4428 2.1131 2.0835 11 1 6.4392 -0.3109 2.1544 12 1 6.6130 0.8397 0.0268 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4321 16 6 0.0442 3.3239 -2.6285 17 6 0.1685 2.6478 -3.8419 18 6 -0.1987 3.2687 -5.0181 19 6 -0.6924 4.5630 -5.0044 20 6 -0.8230 5.2490 -3.8141 21 6 -0.4577 4.6396 -2.6147 22 6 -0.5949 5.3692 -1.3384 23 7 -0.1865 4.9600 -0.1595 24 7 -0.4738 5.8523 0.7218 25 6 -1.0716 6.8583 0.1445 26 6 -1.5694 8.1071 0.8256 27 8 -1.1576 6.5826 -1.1673 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8294 -0.0609 2.9498 34 1 2.2717 2.1232 -1.9978 35 1 0.5524 1.6385 -3.8609 36 1 -0.1013 2.7417 -5.9557 37 1 -0.9769 5.0383 -5.9314 38 1 -1.2130 6.2562 -3.8114 39 1 -0.7789 8.8577 0.8310 40 1 -2.4345 8.4943 0.2873 41 1 -1.8546 7.8726 1.8512 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273856167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:54 Heat of formation + Delta-G solvation = 10.750376 kcal Electronic energy + Delta-G solvation = -26397.508018 eV Core-core repulsion = 22664.825605 eV Total energy + Delta-G solvation = -3732.682414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.19169 -41.14759 -39.39075 -37.27294 -36.81073 -34.51608 -34.22125 -33.13002 -32.20991 -31.85190 -29.08086 -28.69696 -25.92153 -25.01947 -24.42999 -23.57592 -22.78752 -21.87489 -21.04221 -19.47498 -18.55743 -18.53411 -17.70527 -17.36854 -17.18849 -16.48775 -16.31941 -15.79101 -15.56726 -15.24931 -15.01167 -14.69482 -14.57021 -14.31644 -13.93263 -13.67962 -13.59796 -13.49225 -13.34270 -13.18695 -12.95436 -12.90391 -12.74943 -12.66991 -12.31904 -12.14869 -12.04106 -11.84035 -11.56827 -11.25369 -11.03251 -10.64234 -10.48754 -10.05333 -9.61675 -9.52255 -8.14727 -6.32039 -0.67570 0.10422 0.58469 1.09487 1.42026 1.43844 1.47145 1.54162 2.00310 2.36125 2.57550 2.74576 2.82650 3.14410 3.39054 3.66825 3.88553 3.94734 4.06939 4.24797 4.33514 4.36519 4.42837 4.48995 4.53187 4.56906 4.65342 4.70489 4.77654 4.88854 5.01035 5.07361 5.20898 5.27464 5.29345 5.36883 5.45855 5.57505 5.67097 5.79000 5.83024 5.97978 6.19315 6.76177 7.03225 7.26304 7.34980 7.66211 8.91021 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.004617 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.625885 B = 6063.211835 C = 7224.083723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.117 4.117 3 C 0.285 3.715 4 H -0.011 1.011 5 C -0.547 4.547 6 H 0.068 0.932 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.258 1.258 13 N -0.699 5.699 14 C 0.539 3.461 15 O -0.550 6.550 16 C -0.100 4.100 17 C -0.094 4.094 18 C -0.081 4.081 19 C -0.091 4.091 20 C -0.084 4.084 21 C -0.016 4.016 22 C 0.181 3.819 23 N -0.276 5.276 24 N -0.343 5.343 25 C 0.167 3.833 26 C -0.052 4.052 27 O -0.220 6.220 28 H 0.017 0.983 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.264 0.736 34 H 0.399 0.601 35 H 0.148 0.852 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.155 0.845 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 13.432 -17.918 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.156 4.156 3 C 0.182 3.818 4 H 0.007 0.993 5 C -0.585 4.585 6 H 0.086 0.914 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.181 1.181 13 N -0.348 5.348 14 C 0.325 3.675 15 O -0.428 6.428 16 C -0.105 4.105 17 C -0.113 4.113 18 C -0.099 4.099 19 C -0.108 4.108 20 C -0.104 4.104 21 C -0.019 4.019 22 C -0.028 4.028 23 N -0.121 5.121 24 N -0.191 5.191 25 C -0.043 4.043 26 C -0.109 4.109 27 O -0.101 6.101 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.233 0.767 35 H 0.166 0.834 36 H 0.196 0.804 37 H 0.199 0.801 38 H 0.173 0.827 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.538 12.566 -16.062 22.514 hybrid contribution 0.667 0.421 0.092 0.794 sum -8.871 12.987 -15.970 22.414 Atomic orbital electron populations 1.21650 0.97187 0.98986 0.99944 1.21750 0.93520 0.98928 1.01387 1.18277 0.93440 0.88983 0.81084 0.99316 1.21565 0.91463 1.38736 1.06737 0.91407 1.25789 1.03428 0.94402 0.94917 1.70072 1.37061 1.38461 1.09814 0.85374 0.79040 0.77354 0.78724 1.20862 1.20561 1.18148 1.46125 1.14990 1.56233 1.17487 1.18506 0.82733 0.78738 0.87541 1.90780 1.52423 1.58952 1.40599 1.20093 1.01862 0.93690 0.94845 1.21527 0.98707 1.00881 0.90166 1.21821 0.94516 0.95033 0.98497 1.21737 0.96544 0.94289 0.98246 1.21486 0.97643 1.01165 0.90066 1.17379 1.05181 0.92159 0.87180 1.25936 0.96886 0.82713 0.97244 1.75273 1.18902 1.20691 0.97218 1.74497 1.16606 1.00565 1.27383 1.29345 0.96672 1.00575 0.77659 1.20760 1.03988 0.85845 1.00304 1.84733 1.63042 1.32686 1.29607 0.96335 0.93845 0.93345 0.93532 0.91121 0.92670 0.76688 0.83415 0.80395 0.80060 0.82727 0.85923 0.85833 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.51 71.98 0.61 -5.24 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.94 16 3 C 0.29 15.91 2.24 44.24 0.10 16.01 16 4 H -0.01 -0.75 7.58 -2.39 -0.02 -0.77 16 5 C -0.55 -30.97 8.73 25.60 0.22 -30.75 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.01 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -55.41 11.29 21.45 0.24 -55.17 16 9 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 13 N -0.70 -32.14 4.99 -449.20 -2.24 -34.38 16 14 C 0.54 24.31 4.72 86.72 0.41 24.72 16 15 O -0.55 -29.74 11.53 -3.94 -0.05 -29.78 16 16 C -0.10 -3.39 5.69 -19.87 -0.11 -3.50 16 17 C -0.09 -2.18 9.65 22.50 0.22 -1.96 16 18 C -0.08 -1.12 10.02 22.28 0.22 -0.89 16 19 C -0.09 -1.14 10.02 22.28 0.22 -0.92 16 20 C -0.08 -1.67 9.72 22.50 0.22 -1.45 16 21 C -0.02 -0.52 5.90 -19.88 -0.12 -0.64 16 22 C 0.18 6.95 7.75 87.26 0.68 7.62 16 23 N -0.28 -13.18 8.50 -166.34 -1.41 -14.59 16 24 N -0.34 -14.80 12.22 -165.33 -2.02 -16.83 16 25 C 0.17 5.12 8.47 88.31 0.75 5.86 16 26 C -0.05 -0.77 10.51 71.24 0.75 -0.02 16 27 O -0.22 -6.87 10.68 -8.04 -0.09 -6.96 16 28 H 0.02 0.97 7.84 -2.39 -0.02 0.95 16 29 H 0.04 2.03 5.64 -2.39 -0.01 2.01 16 30 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.07 4.11 5.95 -2.39 -0.01 4.10 16 33 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 34 H 0.40 15.75 8.43 -92.71 -0.78 14.96 16 35 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16 37 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 38 H 0.16 2.33 7.94 -2.91 -0.02 2.31 16 39 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -88.79 347.07 1.54 -87.25 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.29 Total: 19.94 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 4.78 Total: 4.18 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -5.43 Total: -120.97 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.13 Total: -36.74 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -88.79 1.54 -87.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273856167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.001 kcal (2) G-P(sol) polarization free energy of solvation -88.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds