Wall clock time and date at job start Tue Mar 31 2020 12:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46949 * 2 1 4 4 N 1.46502 * 109.47171 * 120.00235 * 2 1 3 5 5 C 1.34268 * 125.74834 * 274.99475 * 4 2 1 6 6 C 1.38064 * 107.41216 * 180.02562 * 5 4 2 7 7 C 1.47401 * 126.41752 * 179.97438 * 6 5 4 8 8 O 1.21619 * 119.99955 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00192 * 179.97438 * 7 6 5 10 10 C 1.39869 * 120.00330 * 174.78003 * 9 7 6 11 11 C 1.38985 * 120.03487 * 326.30782 * 10 9 7 12 12 C 1.38150 * 120.06441 * 180.02562 * 11 10 9 13 13 C 1.38173 * 120.14185 * 359.69930 * 12 11 10 14 14 C 1.38914 * 120.07237 * 0.55659 * 13 12 11 15 15 O 1.35752 * 120.03696 * 179.74352 * 14 13 12 16 16 C 1.34825 * 117.00189 * 173.82036 * 15 14 13 17 17 H 1.07997 * 119.99860 * 354.59854 * 16 15 14 18 18 C 1.38653 * 119.99731 * 174.59588 * 16 15 14 19 19 N 1.31560 * 120.00118 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99821 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46837 * 60.00687 * 20 18 16 22 22 H 1.48500 * 109.47171 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47694 * 300.00474 * 20 18 16 24 24 C 1.38728 * 120.04216 * 146.32697 * 10 9 7 25 25 C 1.41294 * 107.16377 * 0.23996 * 6 5 4 26 26 N 1.30447 * 108.02809 * 359.59202 * 25 6 5 27 27 H 1.09002 * 109.47020 * 299.99483 * 1 2 3 28 28 H 1.08992 * 109.47188 * 60.00010 * 1 2 3 29 29 H 1.09006 * 109.47252 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46886 * 239.99755 * 2 1 3 31 31 H 1.09003 * 109.46767 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46748 * 299.99822 * 3 2 1 33 33 H 1.08999 * 109.47526 * 60.00147 * 3 2 1 34 34 H 1.07999 * 126.29592 * 0.02814 * 5 4 2 35 35 H 0.97001 * 120.00315 * 354.77687 * 9 7 6 36 36 H 1.07997 * 119.96628 * 0.02562 * 11 10 9 37 37 H 1.07995 * 119.92832 * 179.97438 * 12 11 10 38 38 H 1.07996 * 119.96874 * 180.29564 * 13 12 11 39 39 H 0.96999 * 119.99886 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.06281 * 0.02562 * 24 10 9 41 41 H 1.08003 * 125.98425 * 179.75892 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1904 -0.1362 2.4068 6 6 2.6634 -1.1223 3.2494 7 6 2.9956 -0.9681 4.6772 8 8 2.8597 0.1117 5.2200 9 7 3.4499 -2.0237 5.3812 10 6 3.8682 -1.8537 6.7050 11 6 4.4798 -0.6680 7.0945 12 6 4.8938 -0.4997 8.4018 13 6 4.6958 -1.5063 9.3273 14 6 4.0899 -2.6959 8.9431 15 8 3.9004 -3.6864 9.8519 16 6 3.1939 -4.7612 9.4475 17 1 2.7338 -4.7685 8.4704 18 6 3.0581 -5.8570 10.2860 19 7 3.6182 -5.8479 11.4764 20 14 2.0786 -7.3458 9.7261 21 1 2.6930 -7.9087 8.4968 22 1 2.0840 -8.3736 10.7979 23 1 0.6799 -6.9386 9.4385 24 6 3.6736 -2.8686 7.6307 25 6 2.7754 -2.3054 2.4852 26 7 2.3846 -2.0392 1.2694 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9562 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.9947 0.8921 2.6727 35 1 3.4867 -2.9014 4.9699 36 1 4.6316 0.1225 6.3745 37 1 5.3691 0.4224 8.7019 38 1 5.0161 -1.3699 10.3496 39 1 3.5229 -6.6143 12.0632 40 1 3.1992 -3.7912 7.3303 41 1 3.1212 -3.2631 2.8453 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276337061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:52 Heat of formation + Delta-G solvation = 18.107218 kcal Electronic energy + Delta-G solvation = -24799.244105 eV Core-core repulsion = 21066.880708 eV Total energy + Delta-G solvation = -3732.363397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.54791 -41.27104 -40.12096 -38.03354 -36.75353 -35.60000 -34.20872 -31.73569 -31.49799 -30.76524 -29.88702 -28.25643 -27.29458 -25.33265 -23.59722 -23.40950 -22.79400 -21.17001 -20.95526 -19.82551 -19.38407 -18.70276 -17.13517 -17.01596 -16.81305 -16.57493 -16.23203 -15.95614 -15.90671 -15.56015 -15.38168 -15.14134 -14.98391 -14.51194 -14.18731 -13.90605 -13.85006 -13.53485 -13.23013 -13.21443 -13.10520 -12.77980 -12.67491 -12.42047 -12.37635 -12.30591 -12.12182 -11.96349 -11.46725 -11.21276 -10.90738 -10.67481 -10.63228 -9.82857 -9.30653 -8.82789 -8.44041 -6.12596 0.26479 0.63492 0.74947 1.14200 1.29564 1.37502 1.48280 1.53499 2.14491 2.20739 2.36936 2.87653 3.20276 3.36362 3.52340 3.70255 3.80417 3.87963 3.98551 4.07279 4.17100 4.30861 4.36761 4.47385 4.58670 4.61551 4.68392 4.71139 4.77859 4.80355 4.86671 5.06153 5.13549 5.14521 5.19115 5.34647 5.44241 5.52800 5.69795 5.70410 5.85505 6.04168 6.20654 6.43749 6.56304 7.00325 7.16889 7.80274 8.78766 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.002808 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.545397 B = 9969.694478 C =11316.806222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 C -0.164 4.164 4 N -0.349 5.349 5 C 0.141 3.859 6 C -0.315 4.315 7 C 0.596 3.404 8 O -0.565 6.565 9 N -0.659 5.659 10 C 0.190 3.810 11 C -0.199 4.199 12 C -0.051 4.051 13 C -0.214 4.214 14 C 0.134 3.866 15 O -0.226 6.226 16 C -0.413 4.413 17 H 0.102 0.898 18 C -0.022 4.022 19 N -0.920 5.920 20 Si 1.017 2.983 21 H -0.254 1.254 22 H -0.274 1.274 23 H -0.260 1.260 24 C -0.260 4.260 25 C 0.085 3.915 26 N -0.318 5.318 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.051 0.949 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.204 0.796 35 H 0.420 0.580 36 H 0.131 0.869 37 H 0.155 0.845 38 H 0.119 0.881 39 H 0.272 0.728 40 H 0.129 0.871 41 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 11.626 -26.357 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 C -0.222 4.222 4 N -0.128 5.128 5 C -0.013 4.013 6 C -0.330 4.330 7 C 0.387 3.613 8 O -0.445 6.445 9 N -0.303 5.303 10 C 0.096 3.904 11 C -0.220 4.220 12 C -0.069 4.069 13 C -0.234 4.234 14 C 0.082 3.918 15 O -0.132 6.132 16 C -0.489 4.489 17 H 0.119 0.881 18 C -0.219 4.219 19 N -0.558 5.558 20 Si 0.836 3.164 21 H -0.178 1.178 22 H -0.198 1.198 23 H -0.184 1.184 24 C -0.282 4.282 25 C -0.103 4.103 26 N -0.138 5.138 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.070 0.930 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.221 0.779 35 H 0.258 0.742 36 H 0.149 0.851 37 H 0.172 0.828 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.147 0.853 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.624 11.822 -26.991 29.827 hybrid contribution -0.139 -1.028 1.031 1.463 sum -4.764 10.794 -25.960 28.515 Atomic orbital electron populations 1.22247 0.92307 1.02878 1.04576 1.21806 0.95807 0.93824 0.84316 1.22264 1.02110 0.92400 1.05448 1.49150 1.47488 1.06992 1.09144 1.23145 0.93642 1.00020 0.84472 1.20019 1.22483 0.96455 0.94026 1.17628 0.75058 0.83045 0.85527 1.90760 1.54507 1.27477 1.71711 1.43193 1.63525 1.12933 1.10658 1.17419 0.94623 0.94674 0.83689 1.20871 1.05364 0.98148 0.97577 1.20918 0.96533 0.97831 0.91651 1.20482 1.08859 0.92929 1.01149 1.19608 0.93698 0.89587 0.88858 1.83981 1.66028 1.26430 1.36780 1.21746 1.29842 0.93335 1.03948 0.88099 1.26566 0.98750 1.01461 0.95146 1.70180 1.44243 1.32184 1.09158 0.84673 0.78069 0.75230 0.78422 1.17769 1.19815 1.18443 1.20844 1.12490 1.02114 0.92714 1.24461 0.96449 0.99417 0.89927 1.77148 1.21592 0.94075 1.20945 0.91956 0.87556 0.93016 0.86970 0.91927 0.87196 0.90928 0.77936 0.74161 0.85107 0.82751 0.86252 0.91858 0.85289 0.77117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.52 71.98 0.69 -0.58 16 2 C 0.14 1.35 3.91 44.99 0.18 1.52 16 3 C -0.16 -0.87 8.82 71.98 0.64 -0.23 16 4 N -0.35 -5.92 3.50 -325.73 -1.14 -7.06 16 5 C 0.14 2.66 10.39 84.28 0.88 3.54 16 6 C -0.31 -7.31 6.13 -20.15 -0.12 -7.43 16 7 C 0.60 17.83 7.55 86.66 0.65 18.48 16 8 O -0.57 -20.41 14.60 -4.09 -0.06 -20.47 16 9 N -0.66 -19.77 5.32 -306.50 -1.63 -21.40 16 10 C 0.19 7.25 6.27 38.15 0.24 7.49 16 11 C -0.20 -7.42 8.65 22.43 0.19 -7.22 16 12 C -0.05 -1.86 10.03 22.23 0.22 -1.64 16 13 C -0.21 -9.41 9.99 22.42 0.22 -9.18 16 14 C 0.13 6.75 6.64 22.56 0.15 6.90 16 15 O -0.23 -13.58 9.76 -22.71 -0.22 -13.80 16 16 C -0.41 -23.83 9.44 67.92 0.64 -23.19 16 17 H 0.10 5.31 5.30 -2.91 -0.02 5.29 16 18 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 19 N -0.92 -56.29 13.67 21.61 0.30 -55.99 16 20 Si 1.02 42.42 29.55 68.60 2.03 44.45 16 21 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 24 C -0.26 -11.49 9.04 22.51 0.20 -11.29 16 25 C 0.08 1.70 11.51 85.65 0.99 2.69 16 26 N -0.32 -6.70 12.50 -56.27 -0.70 -7.40 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.57 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.07 0.37 7.13 -2.39 -0.02 0.36 16 34 H 0.20 2.99 7.23 -2.91 -0.02 2.97 16 35 H 0.42 9.84 7.79 -92.71 -0.72 9.11 16 36 H 0.13 4.66 6.43 -2.91 -0.02 4.64 16 37 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.12 5.08 8.06 -2.91 -0.02 5.05 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.13 5.60 5.72 -2.91 -0.02 5.58 16 41 H 0.21 2.96 7.51 -2.91 -0.02 2.93 16 Total: -1.00 -79.05 354.00 5.15 -73.90 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.35 Total: 28.67 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 6.23 Total: -20.90 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -3.18 Total: -91.85 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.28 Total: -34.27 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -79.05 5.15 -73.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276337061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.003 kcal (2) G-P(sol) polarization free energy of solvation -79.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds