Wall clock time and date at job start Tue Mar 31 2020 12:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 120.00330 * 2 1 4 4 N 1.46503 * 109.47451 * 125.30980 * 3 2 1 5 5 C 1.46504 * 119.99821 * 274.79835 * 4 3 2 6 6 C 1.50697 * 109.46960 * 269.99849 * 5 4 3 7 7 H 1.08006 * 120.00350 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00320 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99775 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00618 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47254 * 89.99977 * 10 8 6 12 12 H 1.48499 * 109.47334 * 210.00577 * 10 8 6 13 13 H 1.48505 * 109.47020 * 330.00174 * 10 8 6 14 14 C 1.34774 * 120.00078 * 94.79592 * 4 3 2 15 15 O 1.21278 * 119.99840 * 5.04620 * 14 4 3 16 16 C 1.50693 * 119.99911 * 185.04351 * 14 4 3 17 17 H 1.09002 * 110.86432 * 45.47343 * 16 14 4 18 18 C 1.54735 * 110.97631 * 281.63434 * 16 14 4 19 19 C 1.51687 * 102.55252 * 266.11036 * 18 16 14 20 20 C 1.47643 * 125.87089 * 164.58361 * 19 18 16 21 21 C 1.40040 * 120.56634 * 180.02562 * 20 19 18 22 22 C 1.38353 * 118.28547 * 179.97438 * 21 20 19 23 23 C 1.38351 * 119.30914 * 0.02562 * 22 21 20 24 24 N 1.31906 * 121.09320 * 0.02562 * 23 22 21 25 25 C 1.31700 * 121.87921 * 359.68181 * 24 23 22 26 26 N 1.29085 * 108.26655 * 344.60612 * 19 18 16 27 27 O 1.41392 * 112.87392 * 359.67934 * 26 19 18 28 28 H 1.08007 * 120.00166 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99803 * 359.97438 * 1 2 3 30 30 H 1.08009 * 120.00002 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47040 * 5.30770 * 3 2 1 32 32 H 1.09005 * 109.47186 * 245.31198 * 3 2 1 33 33 H 1.08994 * 109.46884 * 29.99564 * 5 4 3 34 34 H 1.08997 * 109.46981 * 149.99629 * 5 4 3 35 35 H 0.96990 * 120.00445 * 179.97438 * 9 8 6 36 36 H 1.08998 * 110.79086 * 24.37077 * 18 16 14 37 37 H 1.09002 * 110.79875 * 147.65028 * 18 16 14 38 38 H 1.07997 * 120.85644 * 0.02562 * 21 20 19 39 39 H 1.08004 * 120.34312 * 180.02562 * 22 21 20 40 40 H 1.08008 * 119.45276 * 179.97438 * 23 22 21 41 41 H 1.08005 * 119.71951 * 180.30767 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9991 1.3288 1.1271 5 6 2.5411 1.7597 2.4503 6 6 2.7313 3.2483 2.5875 7 1 3.1510 3.8167 1.7706 8 6 2.3686 3.8850 3.7554 9 7 1.8571 3.1930 4.7500 10 14 2.6050 5.7301 3.9258 11 1 1.3831 6.4312 3.4564 12 1 2.8532 6.0679 5.3504 13 1 3.7670 6.1581 3.1060 14 6 4.2811 0.9542 0.9468 15 8 4.6836 0.6853 -0.1652 16 6 5.2144 0.8695 2.1268 17 1 4.7370 0.3596 2.9636 18 6 5.7096 2.2750 2.5435 19 6 7.0187 2.4008 1.7876 20 6 7.7671 3.6522 1.5558 21 6 8.9700 3.6402 0.8389 22 6 9.6320 4.8402 0.6491 23 6 9.0902 6.0022 1.1688 24 7 7.9555 5.9834 1.8411 25 6 7.2853 4.8679 2.0435 26 7 7.3659 1.2257 1.3813 27 8 6.4491 0.2192 1.7628 28 1 -0.5401 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3590 2.1313 0.0951 32 1 2.6169 1.4050 -0.9338 33 1 1.4850 1.5162 2.5663 34 1 3.1188 1.2471 3.2195 35 1 1.6022 3.6407 5.5718 36 1 5.0045 3.0433 2.2264 37 1 5.8747 2.3239 3.6198 38 1 9.3702 2.7182 0.4437 39 1 10.5621 4.8694 0.1008 40 1 9.6053 6.9402 1.0223 41 1 6.3569 4.8935 2.5949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293925430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:41 Heat of formation + Delta-G solvation = 47.324116 kcal Electronic energy + Delta-G solvation = -26361.166707 eV Core-core repulsion = 22630.070250 eV Total energy + Delta-G solvation = -3731.096457 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.63687 -39.88082 -38.32210 -35.58580 -33.93082 -33.67370 -32.35508 -32.23140 -30.46842 -30.37256 -27.65059 -26.16971 -24.32837 -23.92536 -23.22084 -22.68942 -20.25357 -19.75451 -18.71941 -17.29787 -17.03281 -16.79494 -16.34821 -16.16201 -15.51961 -15.31861 -14.83464 -14.58663 -14.41762 -14.27600 -13.90054 -13.61564 -13.19202 -13.10755 -12.95606 -12.62885 -12.35753 -12.26074 -11.76338 -11.72127 -11.51779 -11.38638 -11.15787 -10.95631 -10.89099 -10.63785 -10.51461 -10.19333 -9.89715 -9.79099 -9.59607 -9.29759 -9.02304 -8.72783 -8.48575 -7.91381 -6.34582 -4.43648 0.54303 1.14676 2.30800 2.49370 2.99986 3.13308 3.22749 3.24565 3.37423 3.76384 3.79882 4.13315 4.19132 4.41407 4.60176 4.77333 4.81956 4.91087 4.97972 5.01859 5.07218 5.27635 5.31130 5.48316 5.52274 5.63155 5.78905 5.84392 5.94102 6.01089 6.09261 6.12521 6.26710 6.33767 6.52972 6.57885 6.86475 6.94154 7.03456 7.36286 7.52692 7.58664 7.83730 7.86512 8.11862 8.59151 8.79596 9.24524 10.71484 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.005613 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.101232 B = 4987.178417 C = 6798.702709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.158 4.158 3 C 0.142 3.858 4 N -0.587 5.587 5 C 0.234 3.766 6 C -0.545 4.545 7 H 0.064 0.936 8 C 0.071 3.929 9 N -0.884 5.884 10 Si 0.888 3.112 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.502 3.498 15 O -0.551 6.551 16 C 0.037 3.963 17 H 0.139 0.861 18 C -0.138 4.138 19 C 0.120 3.880 20 C -0.082 4.082 21 C -0.040 4.040 22 C -0.178 4.178 23 C 0.108 3.892 24 N -0.482 5.482 25 C 0.138 3.862 26 N -0.278 5.278 27 O -0.173 6.173 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.268 0.732 36 H 0.138 0.862 37 H 0.113 0.887 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.158 0.842 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.889 1.563 -3.878 8.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.177 4.177 3 C 0.019 3.981 4 N -0.318 5.318 5 C 0.114 3.886 6 C -0.583 4.583 7 H 0.082 0.918 8 C -0.133 4.133 9 N -0.521 5.521 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.191 1.191 14 C 0.288 3.712 15 O -0.431 6.431 16 C -0.025 4.025 17 H 0.156 0.844 18 C -0.177 4.177 19 C -0.070 4.070 20 C -0.085 4.085 21 C -0.068 4.068 22 C -0.198 4.198 23 C -0.049 4.049 24 N -0.190 5.190 25 C -0.021 4.021 26 N -0.018 5.018 27 O -0.192 6.192 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.156 0.844 37 H 0.131 0.869 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.176 0.824 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.442 1.345 -4.438 9.632 hybrid contribution -0.568 0.518 0.438 0.885 sum 7.874 1.863 -4.000 9.026 Atomic orbital electron populations 1.23775 0.95727 1.01637 1.01496 1.23353 0.96126 0.99163 0.99059 1.20444 0.92063 0.94902 0.90669 1.48193 1.07936 1.63155 1.12547 1.19523 0.96798 0.95185 0.77079 1.21408 1.43795 0.92523 1.00621 0.91835 1.24918 0.94445 0.98507 0.95462 1.69907 1.40935 1.36186 1.05031 0.86641 0.79237 0.84886 0.77785 1.20385 1.20829 1.19100 1.20585 0.83169 0.77504 0.89908 1.90646 1.76340 1.50813 1.25252 1.23528 0.87348 0.94789 0.96834 0.84365 1.23119 0.93722 0.98422 1.02441 1.24125 0.96008 0.92521 0.94374 1.18845 0.95870 0.91328 1.02440 1.21810 0.92422 0.99245 0.93307 1.22097 1.01946 0.93182 1.02553 1.22958 0.91576 0.98320 0.92048 1.67779 1.07633 1.29392 1.14236 1.23165 0.98455 0.86174 0.94342 1.78269 1.12966 0.97902 1.12666 1.91239 1.18793 1.23970 1.85149 0.88816 0.88380 0.87849 0.89772 0.89838 0.94107 0.94512 0.92242 0.84410 0.86851 0.83911 0.84259 0.82434 0.81462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 14.32 29.02 0.42 -2.24 16 2 C -0.16 -2.55 9.84 -36.03 -0.35 -2.91 16 3 C 0.14 2.57 5.93 -5.19 -0.03 2.54 16 4 N -0.59 -11.77 2.44 -176.44 -0.43 -12.20 16 5 C 0.23 5.04 4.85 -5.19 -0.03 5.02 16 6 C -0.55 -12.51 7.11 -34.44 -0.24 -12.76 16 7 H 0.06 1.48 7.36 -52.48 -0.39 1.10 16 8 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.88 -22.27 13.29 55.43 0.74 -21.53 16 10 Si 0.89 18.74 29.54 -169.99 -5.02 13.72 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 14 C 0.50 10.50 6.96 -10.99 -0.08 10.42 16 15 O -0.55 -13.01 16.11 -13.03 -0.21 -13.22 16 16 C 0.04 0.69 3.23 -26.97 -0.09 0.61 16 17 H 0.14 2.39 6.85 -51.93 -0.36 2.04 16 18 C -0.14 -2.39 5.28 -26.48 -0.14 -2.53 16 19 C 0.12 2.04 7.17 -79.42 -0.57 1.47 16 20 C -0.08 -1.21 5.89 -104.89 -0.62 -1.83 16 21 C -0.04 -0.51 9.82 -38.86 -0.38 -0.89 16 22 C -0.18 -1.81 10.10 -39.50 -0.40 -2.21 16 23 C 0.11 1.19 11.17 -17.48 -0.20 0.99 16 24 N -0.48 -6.84 10.35 -12.90 -0.13 -6.97 16 25 C 0.14 2.04 10.79 -17.11 -0.18 1.85 16 26 N -0.28 -5.25 12.19 35.30 0.43 -4.82 16 27 O -0.17 -3.47 11.84 -29.96 -0.35 -3.83 16 28 H 0.09 1.15 8.06 -52.48 -0.42 0.72 16 29 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 30 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.08 1.48 7.76 -51.93 -0.40 1.08 16 32 H 0.08 1.55 7.23 -51.93 -0.38 1.17 16 33 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.04 0.81 6.08 -51.93 -0.32 0.49 16 35 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 36 H 0.14 2.59 4.96 -51.93 -0.26 2.33 16 37 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 38 H 0.14 1.70 7.92 -52.49 -0.42 1.29 16 39 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.16 1.20 8.06 -52.48 -0.42 0.77 16 41 H 0.17 2.45 7.39 -52.48 -0.39 2.06 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -29.24 355.12 -7.60 -36.83 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -4.98 Total: 7.52 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.99 Total: -0.86 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.60 Total: -45.52 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.56 Total: -17.05 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.24 -7.60 -36.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293925430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.159 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds