Wall clock time and date at job start Tue Mar 31 2020 12:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 120.00330 * 2 1 4 4 N 1.46503 * 109.47451 * 125.30980 * 3 2 1 5 5 C 1.46504 * 119.99821 * 274.79835 * 4 3 2 6 6 C 1.50697 * 109.46960 * 269.99849 * 5 4 3 7 7 H 1.08006 * 120.00350 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00320 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99775 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00618 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47254 * 89.99977 * 10 8 6 12 12 H 1.48499 * 109.47334 * 210.00577 * 10 8 6 13 13 H 1.48505 * 109.47020 * 330.00174 * 10 8 6 14 14 C 1.34774 * 120.00078 * 94.79592 * 4 3 2 15 15 O 1.21278 * 119.99840 * 5.04620 * 14 4 3 16 16 C 1.50693 * 119.99911 * 185.04351 * 14 4 3 17 17 H 1.09002 * 110.86432 * 45.47343 * 16 14 4 18 18 C 1.54735 * 110.97631 * 281.63434 * 16 14 4 19 19 C 1.51687 * 102.55252 * 266.11036 * 18 16 14 20 20 C 1.47643 * 125.87089 * 164.58361 * 19 18 16 21 21 C 1.40040 * 120.56634 * 180.02562 * 20 19 18 22 22 C 1.38353 * 118.28547 * 179.97438 * 21 20 19 23 23 C 1.38351 * 119.30914 * 0.02562 * 22 21 20 24 24 N 1.31906 * 121.09320 * 0.02562 * 23 22 21 25 25 C 1.31700 * 121.87921 * 359.68181 * 24 23 22 26 26 N 1.29085 * 108.26655 * 344.60612 * 19 18 16 27 27 O 1.41392 * 112.87392 * 359.67934 * 26 19 18 28 28 H 1.08007 * 120.00166 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99803 * 359.97438 * 1 2 3 30 30 H 1.08009 * 120.00002 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47040 * 5.30770 * 3 2 1 32 32 H 1.09005 * 109.47186 * 245.31198 * 3 2 1 33 33 H 1.08994 * 109.46884 * 29.99564 * 5 4 3 34 34 H 1.08997 * 109.46981 * 149.99629 * 5 4 3 35 35 H 0.96990 * 120.00445 * 179.97438 * 9 8 6 36 36 H 1.08998 * 110.79086 * 24.37077 * 18 16 14 37 37 H 1.09002 * 110.79875 * 147.65028 * 18 16 14 38 38 H 1.07997 * 120.85644 * 0.02562 * 21 20 19 39 39 H 1.08004 * 120.34312 * 180.02562 * 22 21 20 40 40 H 1.08008 * 119.45276 * 179.97438 * 23 22 21 41 41 H 1.08005 * 119.71951 * 180.30767 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9991 1.3288 1.1271 5 6 2.5411 1.7597 2.4503 6 6 2.7313 3.2483 2.5875 7 1 3.1510 3.8167 1.7706 8 6 2.3686 3.8850 3.7554 9 7 1.8571 3.1930 4.7500 10 14 2.6050 5.7301 3.9258 11 1 1.3831 6.4312 3.4564 12 1 2.8532 6.0679 5.3504 13 1 3.7670 6.1581 3.1060 14 6 4.2811 0.9542 0.9468 15 8 4.6836 0.6853 -0.1652 16 6 5.2144 0.8695 2.1268 17 1 4.7370 0.3596 2.9636 18 6 5.7096 2.2750 2.5435 19 6 7.0187 2.4008 1.7876 20 6 7.7671 3.6522 1.5558 21 6 8.9700 3.6402 0.8389 22 6 9.6320 4.8402 0.6491 23 6 9.0902 6.0022 1.1688 24 7 7.9555 5.9834 1.8411 25 6 7.2853 4.8679 2.0435 26 7 7.3659 1.2257 1.3813 27 8 6.4491 0.2192 1.7628 28 1 -0.5401 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3590 2.1313 0.0951 32 1 2.6169 1.4050 -0.9338 33 1 1.4850 1.5162 2.5663 34 1 3.1188 1.2471 3.2195 35 1 1.6022 3.6407 5.5718 36 1 5.0045 3.0433 2.2264 37 1 5.8747 2.3239 3.6198 38 1 9.3702 2.7182 0.4437 39 1 10.5621 4.8694 0.1008 40 1 9.6053 6.9402 1.0223 41 1 6.3569 4.8935 2.5949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293925430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:40 Heat of formation + Delta-G solvation = 31.504313 kcal Electronic energy + Delta-G solvation = -26361.852705 eV Core-core repulsion = 22630.070250 eV Total energy + Delta-G solvation = -3731.782455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.03273 -41.02791 -39.84332 -37.22739 -35.23827 -35.19284 -34.01814 -33.24855 -31.86104 -31.55384 -29.40486 -27.64823 -25.54452 -25.13644 -24.83904 -23.98101 -21.55768 -21.03128 -20.23535 -18.66229 -18.58330 -18.32809 -17.70747 -17.26793 -16.98701 -16.67743 -16.27814 -16.17295 -15.94280 -15.50020 -15.02273 -14.82824 -14.50456 -14.40269 -14.22909 -14.14329 -13.98789 -13.60703 -13.44341 -13.07432 -12.95181 -12.80548 -12.78029 -12.59359 -12.29090 -12.17602 -11.99333 -11.74836 -11.58611 -10.94822 -10.63301 -10.58544 -10.55920 -10.28297 -9.81047 -9.59610 -8.19578 -6.32861 -0.54045 0.18666 1.06555 1.22933 1.41572 1.44464 1.51643 1.57538 1.91201 2.25716 2.43442 2.78213 2.86951 3.11164 3.23832 3.38723 3.45430 3.56101 3.79955 3.91878 3.99484 4.04549 4.13309 4.15574 4.32016 4.43789 4.52054 4.63668 4.72461 4.76483 4.83315 4.89201 5.00627 5.04828 5.10920 5.19039 5.54858 5.60122 5.64732 5.72601 5.86435 6.03334 6.12291 6.42595 6.76425 6.86360 7.11893 7.38611 8.86190 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.005613 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.101232 B = 4987.178417 C = 6798.702709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C 0.140 3.860 4 N -0.584 5.584 5 C 0.247 3.753 6 C -0.540 4.540 7 H 0.058 0.942 8 C 0.038 3.962 9 N -0.912 5.912 10 Si 0.938 3.062 11 H -0.282 1.282 12 H -0.283 1.283 13 H -0.259 1.259 14 C 0.499 3.501 15 O -0.583 6.583 16 C 0.036 3.964 17 H 0.151 0.849 18 C -0.133 4.133 19 C 0.136 3.864 20 C -0.106 4.106 21 C -0.045 4.045 22 C -0.160 4.160 23 C 0.114 3.886 24 N -0.507 5.507 25 C 0.129 3.871 26 N -0.303 5.303 27 O -0.195 6.195 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.035 0.965 35 H 0.268 0.732 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.147 0.853 39 H 0.182 0.818 40 H 0.198 0.802 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.897 3.100 -4.270 10.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.203 4.203 3 C 0.018 3.982 4 N -0.315 5.315 5 C 0.127 3.873 6 C -0.579 4.579 7 H 0.076 0.924 8 C -0.164 4.164 9 N -0.550 5.550 10 Si 0.763 3.237 11 H -0.208 1.208 12 H -0.208 1.208 13 H -0.183 1.183 14 C 0.286 3.714 15 O -0.464 6.464 16 C -0.026 4.026 17 H 0.168 0.832 18 C -0.172 4.172 19 C -0.053 4.053 20 C -0.110 4.110 21 C -0.073 4.073 22 C -0.179 4.179 23 C -0.043 4.043 24 N -0.215 5.215 25 C -0.030 4.030 26 N -0.045 5.045 27 O -0.211 6.211 28 H 0.137 0.863 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.165 0.835 39 H 0.199 0.801 40 H 0.214 0.786 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.428 2.868 -4.831 10.975 hybrid contribution -0.859 0.139 0.497 1.002 sum 8.569 3.007 -4.334 10.063 Atomic orbital electron populations 1.24034 0.94883 1.03184 0.97726 1.23158 0.96847 0.97820 1.02501 1.20533 0.91797 0.96357 0.89503 1.48216 1.08146 1.62542 1.12580 1.19261 0.95724 0.94600 0.77697 1.21480 1.43058 0.93034 1.00280 0.92417 1.25437 0.94276 1.01490 0.95226 1.69983 1.42097 1.37477 1.05484 0.85853 0.79069 0.81120 0.77642 1.20833 1.20838 1.18253 1.20948 0.83464 0.76885 0.90084 1.90616 1.76861 1.52377 1.26580 1.23585 0.86976 0.95836 0.96211 0.83204 1.23078 0.93672 0.96968 1.03512 1.24449 0.95411 0.92900 0.92590 1.18869 0.97197 0.90237 1.04669 1.22029 0.91758 1.00708 0.92774 1.22519 1.02662 0.91559 1.01192 1.23680 0.90317 1.00267 0.90028 1.67807 1.09145 1.29020 1.15536 1.23044 0.98606 0.86518 0.94831 1.78263 1.13236 0.98263 1.14752 1.91204 1.19194 1.25171 1.85570 0.86337 0.87612 0.88413 0.89482 0.90856 0.95574 0.94741 0.92240 0.85730 0.85160 0.83522 0.80070 0.78571 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 14.32 67.79 0.97 -3.28 16 2 C -0.18 -5.92 9.84 25.65 0.25 -5.66 16 3 C 0.14 5.15 5.93 85.63 0.51 5.66 16 4 N -0.58 -23.91 2.44 -830.52 -2.03 -25.94 16 5 C 0.25 10.80 4.85 85.63 0.42 11.22 16 6 C -0.54 -24.87 7.11 25.60 0.18 -24.69 16 7 H 0.06 2.71 7.36 -2.91 -0.02 2.69 16 8 C 0.04 1.78 5.46 84.65 0.46 2.24 16 9 N -0.91 -45.89 13.29 21.45 0.28 -45.61 16 10 Si 0.94 38.10 29.54 68.60 2.03 40.12 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 14 C 0.50 21.43 6.96 87.66 0.61 22.04 16 15 O -0.58 -28.36 16.11 14.75 0.24 -28.12 16 16 C 0.04 1.37 3.23 30.44 0.10 1.47 16 17 H 0.15 5.31 6.85 -2.39 -0.02 5.29 16 18 C -0.13 -4.70 5.28 30.75 0.16 -4.53 16 19 C 0.14 4.70 7.17 45.76 0.33 5.02 16 20 C -0.11 -3.10 5.89 -20.04 -0.12 -3.22 16 21 C -0.05 -1.06 9.82 22.73 0.22 -0.84 16 22 C -0.16 -2.65 10.10 22.32 0.23 -2.43 16 23 C 0.11 2.10 11.17 84.71 0.95 3.04 16 24 N -0.51 -13.40 10.35 -194.72 -2.01 -15.41 16 25 C 0.13 3.73 10.79 85.03 0.92 4.65 16 26 N -0.30 -11.64 12.19 -42.23 -0.51 -12.15 16 27 O -0.19 -8.05 11.84 -20.55 -0.24 -8.29 16 28 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.11 2.65 7.84 -2.91 -0.02 2.63 16 30 H 0.10 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.09 3.08 7.76 -2.39 -0.02 3.06 16 32 H 0.07 2.81 7.23 -2.38 -0.02 2.79 16 33 H 0.03 1.22 8.07 -2.39 -0.02 1.21 16 34 H 0.03 1.53 6.08 -2.39 -0.01 1.52 16 35 H 0.27 12.98 8.31 -92.72 -0.77 12.20 16 36 H 0.12 4.78 4.96 -2.39 -0.01 4.76 16 37 H 0.13 4.08 8.14 -2.39 -0.02 4.06 16 38 H 0.15 3.29 7.92 -2.91 -0.02 3.27 16 39 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.20 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.16 4.68 7.39 -2.91 -0.02 4.66 16 Total: -1.00 -63.40 355.12 4.98 -58.42 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 1.05 Total: 26.29 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 6.18 Total: 10.70 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -4.27 Total: -99.11 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.01 Total: -36.42 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.12 kcal Total: -63.40 4.98 -58.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293925430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.923 kcal (2) G-P(sol) polarization free energy of solvation -63.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds