Wall clock time and date at job start Tue Mar 31 2020 10:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 C 1.50697 * 109.47496 * 120.00369 * 2 1 3 5 5 C 1.35361 * 126.38935 * 145.00214 * 4 2 1 6 6 C 1.41505 * 105.50532 * 180.02562 * 5 4 2 7 7 C 1.47675 * 126.52101 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00140 * 0.02562 * 7 6 5 9 9 N 1.34786 * 120.00093 * 180.02562 * 7 6 5 10 10 C 1.39855 * 119.99715 * 175.50375 * 9 7 6 11 11 C 1.38976 * 120.03577 * 215.15219 * 10 9 7 12 12 C 1.38149 * 120.06944 * 179.97438 * 11 10 9 13 13 C 1.38177 * 120.13671 * 359.74933 * 12 11 10 14 14 C 1.38904 * 120.07366 * 0.50442 * 13 12 11 15 15 O 1.35756 * 120.03329 * 179.77052 * 14 13 12 16 16 C 1.34828 * 116.99974 * 354.34738 * 15 14 13 17 17 H 1.08004 * 119.99622 * 5.02647 * 16 15 14 18 18 C 1.38648 * 120.00140 * 185.02046 * 16 15 14 19 19 N 1.31560 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00039 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47136 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46951 * 120.00551 * 20 18 16 23 23 H 1.48496 * 109.47256 * 240.00577 * 20 18 16 24 24 C 1.38732 * 120.03983 * 35.13075 * 10 9 7 25 25 N 1.31826 * 106.96057 * 0.22554 * 6 5 4 26 26 N 1.28462 * 110.06728 * 359.61790 * 25 6 5 27 27 H 0.97000 * 124.87911 * 180.19514 * 26 25 6 28 28 H 1.08995 * 109.47359 * 299.99593 * 1 2 3 29 29 H 1.09000 * 109.47162 * 59.99674 * 1 2 3 30 30 H 1.09006 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47272 * 240.00791 * 2 1 3 32 32 H 1.09000 * 109.47137 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47422 * 300.00167 * 3 2 1 34 34 H 1.09006 * 109.46905 * 60.00482 * 3 2 1 35 35 H 1.08002 * 127.24476 * 0.02793 * 5 4 2 36 36 H 0.96994 * 120.00234 * 355.50091 * 9 7 6 37 37 H 1.08008 * 119.97090 * 359.95874 * 11 10 9 38 38 H 1.08001 * 119.93655 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.95976 * 180.27746 * 13 12 11 40 40 H 0.97000 * 120.00140 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.06814 * 0.04678 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 3.1416 -1.4815 1.3158 6 6 3.1925 -1.9236 2.6590 7 6 4.2213 -2.7972 3.2583 8 8 5.1411 -3.2084 2.5779 9 7 4.1405 -3.1388 4.5597 10 6 5.0604 -4.0406 5.1042 11 6 4.6573 -4.9374 6.0864 12 6 5.5653 -5.8289 6.6245 13 6 6.8751 -5.8355 6.1845 14 6 7.2855 -4.9381 5.2069 15 8 8.5737 -4.9422 4.7786 16 6 9.4306 -5.7596 5.4232 17 1 9.0653 -6.4318 6.1856 18 6 10.7804 -5.7373 5.1074 19 7 11.2253 -4.9181 4.1790 20 14 11.9676 -6.8693 6.0011 21 1 11.2219 -7.6855 6.9924 22 1 12.6299 -7.7660 5.0200 23 1 12.9947 -6.0565 6.7009 24 6 6.3761 -4.0413 4.6643 25 7 2.1439 -1.4117 3.2723 26 7 1.4595 -0.6970 2.4531 27 1 0.6464 -0.2190 2.6796 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.8407 -1.7108 0.5251 36 1 3.4445 -2.7592 5.1185 37 1 3.6333 -4.9373 6.4298 38 1 5.2498 -6.5246 7.3880 39 1 7.5814 -6.5366 6.6039 40 1 12.1697 -4.9022 3.9583 41 1 6.6919 -3.3451 3.9014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299105074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:16 Heat of formation + Delta-G solvation = 33.382885 kcal Electronic energy + Delta-G solvation = -24687.977594 eV Core-core repulsion = 20956.276600 eV Total energy + Delta-G solvation = -3731.700994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.94302 -39.89624 -38.44576 -36.42774 -36.11835 -34.00694 -32.19423 -32.07097 -30.17289 -29.36485 -28.33726 -27.68271 -25.30813 -24.40410 -23.05709 -21.91180 -21.22950 -21.07475 -19.66103 -18.18605 -17.75286 -17.26510 -16.59151 -16.00917 -15.58589 -15.18694 -14.98927 -14.69601 -14.46144 -14.23190 -14.08464 -13.87582 -13.52842 -13.46662 -13.42107 -12.79349 -12.72811 -12.45160 -11.85032 -11.74661 -11.68583 -11.61527 -11.45916 -11.17561 -10.99860 -10.96293 -10.72619 -10.39699 -9.86866 -9.67863 -9.55687 -9.19042 -9.13312 -8.76203 -7.62903 -7.11271 -6.36185 -3.95103 1.40507 1.87340 2.28012 2.42606 2.59688 3.17804 3.18868 3.24874 3.29731 3.53177 4.02913 4.11271 4.24774 4.40226 4.57496 4.66472 4.87817 5.04421 5.08609 5.17594 5.22588 5.28984 5.42655 5.43385 5.54168 5.55567 5.69664 5.75875 5.78949 5.91687 6.16363 6.19528 6.30190 6.45611 6.70604 6.76029 6.96865 7.10758 7.15307 7.41457 7.53693 7.58740 7.84545 7.86345 8.09021 8.40941 9.08858 9.81151 10.81940 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.002488 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.294839 B =11252.793532 C =12254.008123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.026 4.026 3 C -0.147 4.147 4 C 0.020 3.980 5 C -0.172 4.172 6 C -0.003 4.003 7 C 0.595 3.405 8 O -0.499 6.499 9 N -0.656 5.656 10 C 0.175 3.825 11 C -0.233 4.233 12 C -0.059 4.059 13 C -0.245 4.245 14 C 0.167 3.833 15 O -0.174 6.174 16 C -0.390 4.390 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.186 4.186 25 N -0.260 5.260 26 N -0.378 5.378 27 H 0.442 0.558 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.164 0.836 36 H 0.411 0.589 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.269 0.731 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.433 10.588 -4.876 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.047 4.047 3 C -0.205 4.205 4 C -0.106 4.106 5 C -0.200 4.200 6 C -0.164 4.164 7 C 0.380 3.620 8 O -0.371 6.371 9 N -0.301 5.301 10 C 0.082 3.918 11 C -0.254 4.254 12 C -0.078 4.078 13 C -0.264 4.264 14 C 0.112 3.888 15 O -0.077 6.077 16 C -0.467 4.467 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.207 4.207 25 N -0.096 5.096 26 N -0.093 5.093 27 H 0.287 0.713 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.182 0.818 36 H 0.247 0.753 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.079 0.921 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.912 10.485 -4.667 24.736 hybrid contribution 0.098 -0.181 0.184 0.276 sum -21.814 10.304 -4.484 24.538 Atomic orbital electron populations 1.21904 0.94235 1.02528 1.02458 1.19778 0.95790 0.95898 0.93186 1.21883 1.02182 0.94284 1.02138 1.21355 0.96669 1.03614 0.88911 1.21558 0.99401 1.01964 0.97027 1.21901 0.96350 1.04151 0.93983 1.16959 0.83813 0.79639 0.81599 1.90894 1.32256 1.52606 1.61316 1.43170 1.32359 1.44627 1.09913 1.17179 0.87857 0.91189 0.95620 1.20284 0.99358 1.01145 1.04597 1.20496 0.92725 0.96764 0.97818 1.21182 0.96992 1.04523 1.03749 1.19129 0.86236 0.92266 0.91161 1.83998 1.13464 1.58058 1.52190 1.21395 0.87588 1.17645 1.20035 0.88946 1.25302 0.96610 0.97797 0.96929 1.70069 1.15306 1.35265 1.28962 0.85642 0.79750 0.79109 0.78869 1.19103 1.20200 1.20211 1.20194 0.90596 1.03656 1.06272 1.73542 1.06113 1.09070 1.20905 1.43224 1.22629 1.37020 1.06393 0.71346 0.92914 0.91201 0.91948 0.88204 0.91658 0.91604 0.92725 0.81810 0.75305 0.87323 0.87024 0.85445 0.92126 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 8.95 37.15 0.33 -0.26 16 2 C -0.03 -0.15 3.32 -91.78 -0.30 -0.45 16 3 C -0.15 -0.75 9.18 37.16 0.34 -0.41 16 4 C 0.02 0.18 5.92 -82.21 -0.49 -0.31 16 5 C -0.17 -2.09 10.73 -39.36 -0.42 -2.52 16 6 C 0.00 -0.04 7.13 -82.77 -0.59 -0.63 16 7 C 0.60 10.59 7.67 -12.40 -0.10 10.49 16 8 O -0.50 -10.88 14.36 5.29 0.08 -10.80 16 9 N -0.66 -10.96 5.33 -10.78 -0.06 -11.02 16 10 C 0.17 3.49 6.29 -83.74 -0.53 2.96 16 11 C -0.23 -4.22 9.96 -39.34 -0.39 -4.61 16 12 C -0.06 -1.12 10.03 -39.64 -0.40 -1.52 16 13 C -0.24 -5.55 9.17 -39.36 -0.36 -5.91 16 14 C 0.17 4.32 6.64 -39.14 -0.26 4.06 16 15 O -0.17 -5.25 9.76 0.04 0.00 -5.25 16 16 C -0.39 -11.30 9.49 30.88 0.29 -11.01 16 17 H 0.09 2.46 5.20 -52.48 -0.27 2.19 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -26.17 13.67 55.48 0.76 -25.41 16 20 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 C -0.19 -4.46 8.64 -39.20 -0.34 -4.80 16 25 N -0.26 -3.08 11.93 33.42 0.40 -2.68 16 26 N -0.38 -3.19 6.64 33.50 0.22 -2.97 16 27 H 0.44 2.14 8.14 -190.44 -1.55 0.59 16 28 H 0.05 0.15 7.43 -51.93 -0.39 -0.23 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.41 5.55 8.55 -40.82 -0.35 5.20 16 37 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.13 2.85 5.63 -52.49 -0.30 2.56 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.13 3.44 6.23 -52.49 -0.33 3.12 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -35.62 353.68 -7.72 -43.34 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.12 Total: 7.33 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -3.30 Total: -13.94 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 1.32 Total: -42.08 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.08 Total: -16.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.62 -7.72 -43.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299105074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.723 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds