Wall clock time and date at job start Tue Mar 31 2020 10:35:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53000 * 109.47015 * 2 1
4 4 C 1.50697 * 109.47496 * 120.00369 * 2 1 3
5 5 C 1.35361 * 126.38935 * 145.00214 * 4 2 1
6 6 C 1.41505 * 105.50532 * 180.02562 * 5 4 2
7 7 C 1.47675 * 126.52101 * 179.97438 * 6 5 4
8 8 O 1.21581 * 120.00140 * 0.02562 * 7 6 5
9 9 N 1.34786 * 120.00093 * 180.02562 * 7 6 5
10 10 C 1.39855 * 119.99715 * 175.50375 * 9 7 6
11 11 C 1.38976 * 120.03577 * 215.15219 * 10 9 7
12 12 C 1.38149 * 120.06944 * 179.97438 * 11 10 9
13 13 C 1.38177 * 120.13671 * 359.74933 * 12 11 10
14 14 C 1.38904 * 120.07366 * 0.50442 * 13 12 11
15 15 O 1.35756 * 120.03329 * 179.77052 * 14 13 12
16 16 C 1.34828 * 116.99974 * 354.34738 * 15 14 13
17 17 H 1.08004 * 119.99622 * 5.02647 * 16 15 14
18 18 C 1.38648 * 120.00140 * 185.02046 * 16 15 14
19 19 N 1.31560 * 119.99916 * 0.02562 * 18 16 15
20 20 Si 1.86801 * 120.00039 * 179.97438 * 18 16 15
21 21 H 1.48496 * 109.47136 * 0.02562 * 20 18 16
22 22 H 1.48502 * 109.46951 * 120.00551 * 20 18 16
23 23 H 1.48496 * 109.47256 * 240.00577 * 20 18 16
24 24 C 1.38732 * 120.03983 * 35.13075 * 10 9 7
25 25 N 1.31826 * 106.96057 * 0.22554 * 6 5 4
26 26 N 1.28462 * 110.06728 * 359.61790 * 25 6 5
27 27 H 0.97000 * 124.87911 * 180.19514 * 26 25 6
28 28 H 1.08995 * 109.47359 * 299.99593 * 1 2 3
29 29 H 1.09000 * 109.47162 * 59.99674 * 1 2 3
30 30 H 1.09006 * 109.47149 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.47272 * 240.00791 * 2 1 3
32 32 H 1.09000 * 109.47137 * 179.97438 * 3 2 1
33 33 H 1.09000 * 109.47422 * 300.00167 * 3 2 1
34 34 H 1.09006 * 109.46905 * 60.00482 * 3 2 1
35 35 H 1.08002 * 127.24476 * 0.02793 * 5 4 2
36 36 H 0.96994 * 120.00234 * 355.50091 * 9 7 6
37 37 H 1.08008 * 119.97090 * 359.95874 * 11 10 9
38 38 H 1.08001 * 119.93655 * 179.97438 * 12 11 10
39 39 H 1.07997 * 119.95976 * 180.27746 * 13 12 11
40 40 H 0.97000 * 120.00140 * 179.97438 * 19 18 16
41 41 H 1.07995 * 120.06814 * 0.04678 * 24 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0324 -0.7105 1.2304
5 6 3.1416 -1.4815 1.3158
6 6 3.1925 -1.9236 2.6590
7 6 4.2213 -2.7972 3.2583
8 8 5.1411 -3.2084 2.5779
9 7 4.1405 -3.1388 4.5597
10 6 5.0604 -4.0406 5.1042
11 6 4.6573 -4.9374 6.0864
12 6 5.5653 -5.8289 6.6245
13 6 6.8751 -5.8355 6.1845
14 6 7.2855 -4.9381 5.2069
15 8 8.5737 -4.9422 4.7786
16 6 9.4306 -5.7596 5.4232
17 1 9.0653 -6.4318 6.1856
18 6 10.7804 -5.7373 5.1074
19 7 11.2253 -4.9181 4.1790
20 14 11.9676 -6.8693 6.0011
21 1 11.2219 -7.6855 6.9924
22 1 12.6299 -7.7660 5.0200
23 1 12.9947 -6.0565 6.7009
24 6 6.3761 -4.0413 4.6643
25 7 2.1439 -1.4117 3.2723
26 7 1.4595 -0.6970 2.4531
27 1 0.6464 -0.2190 2.6796
28 1 -0.3634 0.5137 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0277 -0.0005
31 1 1.8933 -0.5137 -0.8901
32 1 3.1299 1.4425 0.0005
33 1 1.6766 1.9564 -0.8899
34 1 1.6766 1.9563 0.8901
35 1 3.8407 -1.7108 0.5251
36 1 3.4445 -2.7592 5.1185
37 1 3.6333 -4.9373 6.4298
38 1 5.2498 -6.5246 7.3880
39 1 7.5814 -6.5366 6.6039
40 1 12.1697 -4.9022 3.9583
41 1 6.6919 -3.3451 3.9014
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000299105074.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:35:15
Heat of formation + Delta-G solvation = 7.569735 kcal
Electronic energy + Delta-G solvation = -24689.096937 eV
Core-core repulsion = 20956.276600 eV
Total energy + Delta-G solvation = -3732.820337 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-43.85298 -41.47486 -40.24786 -38.20407 -36.66884 -35.59783 -34.25560 -33.08765
-31.30670 -30.87311 -29.91822 -28.04345 -27.35808 -25.71979 -23.93407 -23.40688
-22.77677 -22.02435 -20.97927 -19.98843 -19.09114 -18.60057 -17.87893 -17.17957
-17.02712 -16.75159 -16.25608 -16.00189 -15.91727 -15.62618 -15.45545 -15.26119
-14.93369 -14.54369 -14.42826 -14.24839 -13.91681 -13.59148 -13.22045 -13.05329
-12.98352 -12.69892 -12.43439 -12.38264 -12.20795 -12.12166 -12.07728 -11.71992
-11.57066 -11.37597 -10.94636 -10.76805 -10.53198 -10.03620 -9.36857 -8.89636
-8.45544 -6.15160 0.14732 0.63767 0.71201 1.04605 1.35595 1.45281
1.55609 1.71136 2.06244 2.19510 2.21388 2.83679 3.12472 3.22661
3.49248 3.55107 3.84241 4.13867 4.16424 4.21059 4.35468 4.37271
4.41158 4.55006 4.64209 4.68096 4.73589 4.77069 4.95934 4.99761
5.03809 5.12187 5.15142 5.21089 5.34130 5.37497 5.39826 5.42919
5.62774 5.73124 5.99719 6.04272 6.17794 6.33710 6.76389 6.97899
7.03016 7.80602 8.78686
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.023757 B = 0.002488 C = 0.002284
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1178.294839 B =11252.793532 C =12254.008123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.025 4.025
3 C -0.146 4.146
4 C 0.047 3.953
5 C -0.200 4.200
6 C -0.032 4.032
7 C 0.593 3.407
8 O -0.551 6.551
9 N -0.643 5.643
10 C 0.180 3.820
11 C -0.202 4.202
12 C -0.047 4.047
13 C -0.252 4.252
14 C 0.128 3.872
15 O -0.234 6.234
16 C -0.413 4.413
17 H 0.108 0.892
18 C -0.029 4.029
19 N -0.925 5.925
20 Si 1.025 2.975
21 H -0.246 1.246
22 H -0.269 1.269
23 H -0.268 1.268
24 C -0.212 4.212
25 N -0.255 5.255
26 N -0.354 5.354
27 H 0.462 0.538
28 H 0.067 0.933
29 H 0.084 0.916
30 H 0.057 0.943
31 H 0.103 0.897
32 H 0.048 0.952
33 H 0.084 0.916
34 H 0.059 0.941
35 H 0.156 0.844
36 H 0.430 0.570
37 H 0.162 0.838
38 H 0.163 0.837
39 H 0.127 0.873
40 H 0.272 0.728
41 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.547 10.480 -3.053 28.704
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.045 4.045
3 C -0.204 4.204
4 C -0.080 4.080
5 C -0.228 4.228
6 C -0.191 4.191
7 C 0.381 3.619
8 O -0.426 6.426
9 N -0.289 5.289
10 C 0.085 3.915
11 C -0.223 4.223
12 C -0.065 4.065
13 C -0.271 4.271
14 C 0.077 3.923
15 O -0.141 6.141
16 C -0.489 4.489
17 H 0.125 0.875
18 C -0.225 4.225
19 N -0.563 5.563
20 Si 0.844 3.156
21 H -0.169 1.169
22 H -0.195 1.195
23 H -0.193 1.193
24 C -0.234 4.234
25 N -0.092 5.092
26 N -0.072 5.072
27 H 0.311 0.689
28 H 0.086 0.914
29 H 0.103 0.897
30 H 0.076 0.924
31 H 0.121 0.879
32 H 0.067 0.933
33 H 0.102 0.898
34 H 0.079 0.921
35 H 0.174 0.826
36 H 0.269 0.731
37 H 0.179 0.821
38 H 0.181 0.819
39 H 0.144 0.856
40 H 0.081 0.919
41 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -26.143 10.408 -2.800 28.278
hybrid contribution 0.947 0.009 -0.404 1.030
sum -25.196 10.416 -3.204 27.452
Atomic orbital electron populations
1.21917 0.92255 1.02753 1.04017 1.19933 0.97323 0.95796 0.91438
1.21884 1.01174 0.93945 1.03386 1.21701 0.94899 1.01590 0.89783
1.21679 1.01073 1.03708 0.96382 1.21423 0.97018 1.05695 0.94919
1.17473 0.83756 0.79204 0.81515 1.90877 1.34543 1.54673 1.62519
1.43081 1.31920 1.43999 1.09926 1.17349 0.86745 0.91863 0.95506
1.20890 1.01514 0.98177 1.01704 1.21042 0.90710 0.96983 0.97751
1.21349 0.99045 1.03725 1.03009 1.19638 0.85391 0.94187 0.93131
1.83967 1.15459 1.60072 1.54596 1.21978 0.88265 1.18075 1.20579
0.87464 1.26740 0.98400 0.99647 0.97752 1.70238 1.15948 1.38347
1.31799 0.84446 0.76694 0.76723 0.77753 1.16912 1.19458 1.19325
1.20186 0.92689 1.03875 1.06626 1.73452 1.05457 1.09149 1.21188
1.43311 1.22507 1.35469 1.05869 0.68926 0.91426 0.89728 0.92367
0.87869 0.93316 0.89753 0.92143 0.82620 0.73050 0.82060 0.81942
0.85564 0.91885 0.88047
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.65 8.95 71.98 0.64 -0.01 16
2 C -0.02 -0.22 3.32 -11.54 -0.04 -0.26 16
3 C -0.15 -1.17 9.18 71.98 0.66 -0.51 16
4 C 0.05 0.75 5.92 41.40 0.25 1.00 16
5 C -0.20 -4.97 10.73 22.41 0.24 -4.73 16
6 C -0.03 -0.91 7.13 42.44 0.30 -0.60 16
7 C 0.59 21.88 7.67 86.73 0.66 22.55 16
8 O -0.55 -25.97 14.36 -3.97 -0.06 -26.03 16
9 N -0.64 -21.12 5.33 -306.27 -1.63 -22.75 16
10 C 0.18 7.09 6.29 38.16 0.24 7.33 16
11 C -0.20 -6.54 9.96 22.43 0.22 -6.32 16
12 C -0.05 -1.59 10.03 22.23 0.22 -1.37 16
13 C -0.25 -11.40 9.17 22.41 0.21 -11.19 16
14 C 0.13 7.01 6.64 22.56 0.15 7.16 16
15 O -0.23 -15.33 9.76 -22.78 -0.22 -15.56 16
16 C -0.41 -25.29 9.49 67.92 0.64 -24.64 16
17 H 0.11 5.91 5.20 -2.91 -0.02 5.90 16
18 C -0.03 -1.71 5.49 84.83 0.47 -1.24 16
19 N -0.92 -60.04 13.67 21.61 0.30 -59.74 16
20 Si 1.03 44.54 29.55 68.60 2.03 46.57 16
21 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16
22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16
24 C -0.21 -10.82 8.64 22.52 0.19 -10.63 16
25 N -0.25 -5.56 11.93 -48.19 -0.57 -6.13 16
26 N -0.35 -5.05 6.64 -47.93 -0.32 -5.37 16
27 H 0.46 2.74 8.14 -219.99 -1.79 0.95 16
28 H 0.07 0.10 7.43 -2.39 -0.02 0.08 16
29 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16
30 H 0.06 0.33 8.14 -2.38 -0.02 0.32 16
31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16
32 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16
33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16
34 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16
35 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16
36 H 0.43 10.63 8.55 -92.71 -0.79 9.83 16
37 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16
38 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16
39 H 0.13 5.66 5.63 -2.91 -0.02 5.65 16
40 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16
41 H 0.10 5.77 6.23 -2.91 -0.02 5.76 16
Total: -1.00 -87.79 353.68 3.10 -84.69
By element:
Atomic # 1 Polarization: 29.27 SS G_CDS: -1.49 Total: 27.79 kcal
Atomic # 6 Polarization: -28.54 SS G_CDS: 5.07 Total: -23.47 kcal
Atomic # 7 Polarization: -91.76 SS G_CDS: -2.23 Total: -93.99 kcal
Atomic # 8 Polarization: -41.30 SS G_CDS: -0.28 Total: -41.58 kcal
Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal
Total: -87.79 3.10 -84.69 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299105074.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.261 kcal
(2) G-P(sol) polarization free energy of solvation -87.788 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.474 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.692 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.570 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds