Wall clock time and date at job start Tue Mar 31 2020 10:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 C 1.50697 * 109.47496 * 120.00369 * 2 1 3 5 5 C 1.35361 * 126.38935 * 145.00214 * 4 2 1 6 6 C 1.41505 * 105.50532 * 180.02562 * 5 4 2 7 7 C 1.47675 * 126.52101 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00140 * 0.02562 * 7 6 5 9 9 N 1.34786 * 120.00093 * 180.02562 * 7 6 5 10 10 C 1.39855 * 119.99715 * 175.50375 * 9 7 6 11 11 C 1.38976 * 120.03577 * 215.15219 * 10 9 7 12 12 C 1.38149 * 120.06944 * 179.97438 * 11 10 9 13 13 C 1.38177 * 120.13671 * 359.74933 * 12 11 10 14 14 C 1.38904 * 120.07366 * 0.50442 * 13 12 11 15 15 O 1.35756 * 120.03329 * 179.77052 * 14 13 12 16 16 C 1.34828 * 116.99974 * 354.34738 * 15 14 13 17 17 H 1.08004 * 119.99622 * 5.02647 * 16 15 14 18 18 C 1.38648 * 120.00140 * 185.02046 * 16 15 14 19 19 N 1.31560 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00039 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47136 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46951 * 120.00551 * 20 18 16 23 23 H 1.48496 * 109.47256 * 240.00577 * 20 18 16 24 24 C 1.38732 * 120.03983 * 35.13075 * 10 9 7 25 25 N 1.31826 * 106.96057 * 0.22554 * 6 5 4 26 26 N 1.28462 * 110.06728 * 359.61790 * 25 6 5 27 27 H 0.97000 * 124.87911 * 180.19514 * 26 25 6 28 28 H 1.08995 * 109.47359 * 299.99593 * 1 2 3 29 29 H 1.09000 * 109.47162 * 59.99674 * 1 2 3 30 30 H 1.09006 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47272 * 240.00791 * 2 1 3 32 32 H 1.09000 * 109.47137 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47422 * 300.00167 * 3 2 1 34 34 H 1.09006 * 109.46905 * 60.00482 * 3 2 1 35 35 H 1.08002 * 127.24476 * 0.02793 * 5 4 2 36 36 H 0.96994 * 120.00234 * 355.50091 * 9 7 6 37 37 H 1.08008 * 119.97090 * 359.95874 * 11 10 9 38 38 H 1.08001 * 119.93655 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.95976 * 180.27746 * 13 12 11 40 40 H 0.97000 * 120.00140 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.06814 * 0.04678 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 3.1416 -1.4815 1.3158 6 6 3.1925 -1.9236 2.6590 7 6 4.2213 -2.7972 3.2583 8 8 5.1411 -3.2084 2.5779 9 7 4.1405 -3.1388 4.5597 10 6 5.0604 -4.0406 5.1042 11 6 4.6573 -4.9374 6.0864 12 6 5.5653 -5.8289 6.6245 13 6 6.8751 -5.8355 6.1845 14 6 7.2855 -4.9381 5.2069 15 8 8.5737 -4.9422 4.7786 16 6 9.4306 -5.7596 5.4232 17 1 9.0653 -6.4318 6.1856 18 6 10.7804 -5.7373 5.1074 19 7 11.2253 -4.9181 4.1790 20 14 11.9676 -6.8693 6.0011 21 1 11.2219 -7.6855 6.9924 22 1 12.6299 -7.7660 5.0200 23 1 12.9947 -6.0565 6.7009 24 6 6.3761 -4.0413 4.6643 25 7 2.1439 -1.4117 3.2723 26 7 1.4595 -0.6970 2.4531 27 1 0.6464 -0.2190 2.6796 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.8407 -1.7108 0.5251 36 1 3.4445 -2.7592 5.1185 37 1 3.6333 -4.9373 6.4298 38 1 5.2498 -6.5246 7.3880 39 1 7.5814 -6.5366 6.6039 40 1 12.1697 -4.9022 3.9583 41 1 6.6919 -3.3451 3.9014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299105074.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:15 Heat of formation + Delta-G solvation = 7.569735 kcal Electronic energy + Delta-G solvation = -24689.096937 eV Core-core repulsion = 20956.276600 eV Total energy + Delta-G solvation = -3732.820337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.85298 -41.47486 -40.24786 -38.20407 -36.66884 -35.59783 -34.25560 -33.08765 -31.30670 -30.87311 -29.91822 -28.04345 -27.35808 -25.71979 -23.93407 -23.40688 -22.77677 -22.02435 -20.97927 -19.98843 -19.09114 -18.60057 -17.87893 -17.17957 -17.02712 -16.75159 -16.25608 -16.00189 -15.91727 -15.62618 -15.45545 -15.26119 -14.93369 -14.54369 -14.42826 -14.24839 -13.91681 -13.59148 -13.22045 -13.05329 -12.98352 -12.69892 -12.43439 -12.38264 -12.20795 -12.12166 -12.07728 -11.71992 -11.57066 -11.37597 -10.94636 -10.76805 -10.53198 -10.03620 -9.36857 -8.89636 -8.45544 -6.15160 0.14732 0.63767 0.71201 1.04605 1.35595 1.45281 1.55609 1.71136 2.06244 2.19510 2.21388 2.83679 3.12472 3.22661 3.49248 3.55107 3.84241 4.13867 4.16424 4.21059 4.35468 4.37271 4.41158 4.55006 4.64209 4.68096 4.73589 4.77069 4.95934 4.99761 5.03809 5.12187 5.15142 5.21089 5.34130 5.37497 5.39826 5.42919 5.62774 5.73124 5.99719 6.04272 6.17794 6.33710 6.76389 6.97899 7.03016 7.80602 8.78686 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.002488 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.294839 B =11252.793532 C =12254.008123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.025 4.025 3 C -0.146 4.146 4 C 0.047 3.953 5 C -0.200 4.200 6 C -0.032 4.032 7 C 0.593 3.407 8 O -0.551 6.551 9 N -0.643 5.643 10 C 0.180 3.820 11 C -0.202 4.202 12 C -0.047 4.047 13 C -0.252 4.252 14 C 0.128 3.872 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.108 0.892 18 C -0.029 4.029 19 N -0.925 5.925 20 Si 1.025 2.975 21 H -0.246 1.246 22 H -0.269 1.269 23 H -0.268 1.268 24 C -0.212 4.212 25 N -0.255 5.255 26 N -0.354 5.354 27 H 0.462 0.538 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.156 0.844 36 H 0.430 0.570 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.127 0.873 40 H 0.272 0.728 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.547 10.480 -3.053 28.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.045 4.045 3 C -0.204 4.204 4 C -0.080 4.080 5 C -0.228 4.228 6 C -0.191 4.191 7 C 0.381 3.619 8 O -0.426 6.426 9 N -0.289 5.289 10 C 0.085 3.915 11 C -0.223 4.223 12 C -0.065 4.065 13 C -0.271 4.271 14 C 0.077 3.923 15 O -0.141 6.141 16 C -0.489 4.489 17 H 0.125 0.875 18 C -0.225 4.225 19 N -0.563 5.563 20 Si 0.844 3.156 21 H -0.169 1.169 22 H -0.195 1.195 23 H -0.193 1.193 24 C -0.234 4.234 25 N -0.092 5.092 26 N -0.072 5.072 27 H 0.311 0.689 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.174 0.826 36 H 0.269 0.731 37 H 0.179 0.821 38 H 0.181 0.819 39 H 0.144 0.856 40 H 0.081 0.919 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -26.143 10.408 -2.800 28.278 hybrid contribution 0.947 0.009 -0.404 1.030 sum -25.196 10.416 -3.204 27.452 Atomic orbital electron populations 1.21917 0.92255 1.02753 1.04017 1.19933 0.97323 0.95796 0.91438 1.21884 1.01174 0.93945 1.03386 1.21701 0.94899 1.01590 0.89783 1.21679 1.01073 1.03708 0.96382 1.21423 0.97018 1.05695 0.94919 1.17473 0.83756 0.79204 0.81515 1.90877 1.34543 1.54673 1.62519 1.43081 1.31920 1.43999 1.09926 1.17349 0.86745 0.91863 0.95506 1.20890 1.01514 0.98177 1.01704 1.21042 0.90710 0.96983 0.97751 1.21349 0.99045 1.03725 1.03009 1.19638 0.85391 0.94187 0.93131 1.83967 1.15459 1.60072 1.54596 1.21978 0.88265 1.18075 1.20579 0.87464 1.26740 0.98400 0.99647 0.97752 1.70238 1.15948 1.38347 1.31799 0.84446 0.76694 0.76723 0.77753 1.16912 1.19458 1.19325 1.20186 0.92689 1.03875 1.06626 1.73452 1.05457 1.09149 1.21188 1.43311 1.22507 1.35469 1.05869 0.68926 0.91426 0.89728 0.92367 0.87869 0.93316 0.89753 0.92143 0.82620 0.73050 0.82060 0.81942 0.85564 0.91885 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 8.95 71.98 0.64 -0.01 16 2 C -0.02 -0.22 3.32 -11.54 -0.04 -0.26 16 3 C -0.15 -1.17 9.18 71.98 0.66 -0.51 16 4 C 0.05 0.75 5.92 41.40 0.25 1.00 16 5 C -0.20 -4.97 10.73 22.41 0.24 -4.73 16 6 C -0.03 -0.91 7.13 42.44 0.30 -0.60 16 7 C 0.59 21.88 7.67 86.73 0.66 22.55 16 8 O -0.55 -25.97 14.36 -3.97 -0.06 -26.03 16 9 N -0.64 -21.12 5.33 -306.27 -1.63 -22.75 16 10 C 0.18 7.09 6.29 38.16 0.24 7.33 16 11 C -0.20 -6.54 9.96 22.43 0.22 -6.32 16 12 C -0.05 -1.59 10.03 22.23 0.22 -1.37 16 13 C -0.25 -11.40 9.17 22.41 0.21 -11.19 16 14 C 0.13 7.01 6.64 22.56 0.15 7.16 16 15 O -0.23 -15.33 9.76 -22.78 -0.22 -15.56 16 16 C -0.41 -25.29 9.49 67.92 0.64 -24.64 16 17 H 0.11 5.91 5.20 -2.91 -0.02 5.90 16 18 C -0.03 -1.71 5.49 84.83 0.47 -1.24 16 19 N -0.92 -60.04 13.67 21.61 0.30 -59.74 16 20 Si 1.03 44.54 29.55 68.60 2.03 46.57 16 21 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 C -0.21 -10.82 8.64 22.52 0.19 -10.63 16 25 N -0.25 -5.56 11.93 -48.19 -0.57 -6.13 16 26 N -0.35 -5.05 6.64 -47.93 -0.32 -5.37 16 27 H 0.46 2.74 8.14 -219.99 -1.79 0.95 16 28 H 0.07 0.10 7.43 -2.39 -0.02 0.08 16 29 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.06 0.33 8.14 -2.38 -0.02 0.32 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 36 H 0.43 10.63 8.55 -92.71 -0.79 9.83 16 37 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 38 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 39 H 0.13 5.66 5.63 -2.91 -0.02 5.65 16 40 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 41 H 0.10 5.77 6.23 -2.91 -0.02 5.76 16 Total: -1.00 -87.79 353.68 3.10 -84.69 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -1.49 Total: 27.79 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 5.07 Total: -23.47 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -2.23 Total: -93.99 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.28 Total: -41.58 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -87.79 3.10 -84.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299105074.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.261 kcal (2) G-P(sol) polarization free energy of solvation -87.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds