Wall clock time and date at job start Tue Mar 31 2020 11:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46800 * 2 1 4 4 C 1.50701 * 109.47145 * 240.00569 * 2 1 3 5 5 H 1.08009 * 119.99651 * 241.34574 * 4 2 1 6 6 C 1.37868 * 120.00338 * 61.34033 * 4 2 1 7 7 N 1.31521 * 120.00453 * 193.97821 * 6 4 2 8 8 Si 1.86801 * 120.00217 * 13.98060 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.54309 * 8 6 4 10 10 H 1.48497 * 109.47512 * 204.54782 * 8 6 4 11 11 H 1.48505 * 109.46983 * 324.55043 * 8 6 4 12 12 C 1.52998 * 109.47584 * 119.99837 * 2 1 3 13 13 N 1.46496 * 109.47329 * 300.00315 * 12 2 1 14 14 C 1.34773 * 120.00133 * 180.26769 * 13 12 2 15 15 O 1.21580 * 120.00063 * 359.72954 * 14 13 12 16 16 C 1.47642 * 120.00100 * 179.72037 * 14 13 12 17 17 N 1.31092 * 120.39303 * 0.02562 * 16 14 13 18 18 N 1.27932 * 124.25903 * 179.97438 * 17 16 14 19 19 H 0.96996 * 118.24142 * 179.97438 * 18 17 16 20 20 C 1.34892 * 123.51446 * 0.02562 * 18 17 16 21 21 O 1.21735 * 120.77413 * 180.02562 * 20 18 17 22 22 C 1.46944 * 118.45022 * 359.97438 * 20 18 17 23 23 C 1.39129 * 122.91061 * 180.02562 * 22 20 18 24 24 C 1.37866 * 119.34408 * 179.97438 * 23 22 20 25 25 C 1.38881 * 120.74049 * 0.02562 * 24 23 22 26 26 C 1.37883 * 120.79395 * 0.02562 * 25 24 23 27 27 C 1.39060 * 119.39572 * 359.68549 * 26 25 24 28 28 H 1.08998 * 109.47272 * 309.36723 * 1 2 3 29 29 H 1.08992 * 109.47141 * 69.36784 * 1 2 3 30 30 H 1.09004 * 109.46813 * 189.36595 * 1 2 3 31 31 H 1.09008 * 109.47129 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47084 * 299.99863 * 3 2 1 33 33 H 1.08999 * 109.47102 * 60.00497 * 3 2 1 34 34 H 0.96991 * 120.00307 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47488 * 180.02562 * 12 2 1 36 36 H 1.09007 * 109.46656 * 60.00290 * 12 2 1 37 37 H 0.97008 * 119.99791 * 359.97438 * 13 12 2 38 38 H 1.07996 * 120.32634 * 359.95977 * 23 22 20 39 39 H 1.08000 * 119.63523 * 179.97438 * 24 23 22 40 40 H 1.07996 * 119.60177 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.29956 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6353 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4825 7 7 1.9157 -0.9724 -3.5461 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8820 -0.4879 3.6694 15 8 2.5810 -1.4764 3.7810 16 6 1.3949 0.2116 4.8750 17 7 0.6405 1.2779 4.7637 18 7 0.1782 1.9398 5.7561 19 1 -0.3720 2.7173 5.5729 20 6 0.4158 1.6149 7.0436 21 8 -0.0503 2.2805 7.9501 22 6 1.2492 0.4382 7.3263 23 6 1.5525 0.0193 8.6179 24 6 2.3417 -1.0966 8.7985 25 6 2.8341 -1.8018 7.7081 26 6 2.5458 -1.4022 6.4203 27 6 1.7465 -0.2828 6.2159 28 1 -0.3634 0.6518 0.7945 29 1 -0.3633 0.3621 -0.9617 30 1 -0.3633 -1.0140 0.1672 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6979 -0.6297 -4.4269 35 1 3.1301 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 1.1736 0.5631 9.4706 39 1 2.5804 -1.4256 9.7991 40 1 3.4510 -2.6732 7.8708 41 1 2.9333 -1.9563 5.5782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315760657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:12 Heat of formation + Delta-G solvation = 14.177899 kcal Electronic energy + Delta-G solvation = -25839.127763 eV Core-core repulsion = 22106.593978 eV Total energy + Delta-G solvation = -3732.533785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05982 -39.65465 -38.72994 -38.07640 -36.80954 -33.60676 -32.96958 -31.63785 -31.57712 -30.59809 -26.74191 -26.39724 -25.39547 -24.99153 -24.69269 -22.67527 -21.22730 -19.65526 -19.29257 -18.99139 -17.99644 -17.00643 -16.53028 -16.24792 -16.06098 -15.45988 -15.05923 -14.95633 -14.93416 -14.77613 -14.31561 -13.60615 -13.46213 -13.17078 -13.01995 -12.88643 -12.63814 -12.53481 -12.25438 -12.07758 -12.05644 -11.64826 -11.38855 -10.49927 -10.36096 -10.22160 -10.21216 -10.16270 -10.10065 -9.75262 -9.45471 -9.16565 -8.79174 -8.72298 -8.54400 -8.48141 -6.17932 -4.15722 0.16231 0.33761 1.36341 2.13353 2.32064 3.06805 3.10947 3.22336 3.29622 3.37264 3.61241 3.63210 4.17462 4.33001 4.39967 4.50203 4.77850 4.88981 4.96389 5.12912 5.22818 5.27151 5.68328 5.70201 5.85194 5.87076 5.98826 6.01593 6.06172 6.09404 6.32706 6.39758 6.45477 6.48742 6.57382 6.65362 6.68298 6.90022 7.15256 7.16337 7.37923 7.61743 7.68239 7.84829 8.28499 8.41884 8.86940 9.45892 10.95012 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.003243 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.564778 B = 8632.701167 C = 9576.736436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.029 3.971 3 C -0.150 4.150 4 C -0.514 4.514 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.248 1.248 12 C 0.139 3.861 13 N -0.696 5.696 14 C 0.582 3.418 15 O -0.531 6.531 16 C 0.071 3.929 17 N -0.200 5.200 18 N -0.463 5.463 19 H 0.441 0.559 20 C 0.516 3.484 21 O -0.509 6.509 22 C -0.142 4.142 23 C -0.057 4.057 24 C -0.118 4.118 25 C -0.089 4.089 26 C -0.091 4.091 27 C -0.033 4.033 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.406 0.594 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 2.907 21.784 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.207 4.207 4 C -0.552 4.552 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.174 1.174 12 C 0.017 3.983 13 N -0.347 5.347 14 C 0.365 3.635 15 O -0.407 6.407 16 C -0.110 4.110 17 N -0.024 5.024 18 N -0.210 5.210 19 H 0.287 0.713 20 C 0.308 3.692 21 O -0.383 6.383 22 C -0.149 4.149 23 C -0.076 4.076 24 C -0.137 4.137 25 C -0.107 4.107 26 C -0.111 4.111 27 C -0.036 4.036 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.243 0.757 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.511 3.022 21.607 21.870 hybrid contribution -0.638 1.461 0.257 1.615 sum -2.150 4.483 21.864 22.423 Atomic orbital electron populations 1.22314 0.97749 0.99956 1.00127 1.18730 0.92615 0.92307 0.93610 1.22382 1.01263 0.98282 0.98745 1.20694 1.34206 1.12383 0.87916 0.90424 1.24960 0.94622 0.97270 0.95787 1.69944 1.48070 1.35913 0.98752 0.87314 0.79390 0.85560 0.76063 1.21333 1.23406 1.17438 1.21690 0.99001 0.96048 0.81588 1.46252 1.51295 1.31659 1.05455 1.17061 0.80850 0.83707 0.81909 1.90650 1.38729 1.25888 1.85414 1.22847 0.99867 0.93931 0.94382 1.70262 1.07093 1.06021 1.19071 1.44192 1.46103 1.28271 1.02477 0.71341 1.19159 0.81322 0.85632 0.83064 1.90910 1.50968 1.52943 1.43502 1.19858 1.02925 0.97048 0.95036 1.20943 0.95764 0.95753 0.95157 1.21365 0.97464 0.95115 0.99758 1.21583 0.97738 0.99185 0.92210 1.22127 0.94954 0.94775 0.99215 1.19306 0.97758 0.96309 0.90269 0.95788 0.92455 0.93308 0.92689 0.93972 0.95029 0.92514 0.91288 0.91171 0.75727 0.84187 0.84794 0.84622 0.80762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 7.53 37.16 0.28 -2.53 16 2 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 3 C -0.15 -2.91 7.52 37.16 0.28 -2.63 16 4 C -0.51 -13.27 8.62 -34.44 -0.30 -13.56 16 5 H 0.08 2.19 7.99 -52.48 -0.42 1.77 16 6 C 0.08 2.07 5.32 -17.82 -0.09 1.97 16 7 N -0.89 -26.03 13.96 55.43 0.77 -25.25 16 8 Si 0.88 20.57 22.79 -169.99 -3.87 16.69 16 9 H -0.29 -6.64 7.10 56.52 0.40 -6.24 16 10 H -0.31 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.25 -5.23 4.65 56.52 0.26 -4.97 16 12 C 0.14 2.55 4.49 -4.04 -0.02 2.53 16 13 N -0.70 -10.73 4.99 -61.32 -0.31 -11.03 16 14 C 0.58 8.79 7.80 -12.42 -0.10 8.69 16 15 O -0.53 -8.93 13.69 5.30 0.07 -8.86 16 16 C 0.07 0.94 7.04 -80.72 -0.57 0.37 16 17 N -0.20 -2.38 10.53 34.51 0.36 -2.01 16 18 N -0.46 -4.90 6.09 30.35 0.18 -4.72 16 19 H 0.44 3.46 8.89 -190.76 -1.70 1.76 16 20 C 0.52 6.32 8.00 -12.68 -0.10 6.22 16 21 O -0.51 -7.15 17.50 5.16 0.09 -7.06 16 22 C -0.14 -1.69 5.90 -104.83 -0.62 -2.31 16 23 C -0.06 -0.56 9.71 -39.39 -0.38 -0.94 16 24 C -0.12 -0.92 10.01 -39.48 -0.40 -1.32 16 25 C -0.09 -0.76 10.01 -39.47 -0.40 -1.15 16 26 C -0.09 -1.03 9.36 -39.41 -0.37 -1.40 16 27 C -0.03 -0.40 5.90 -104.75 -0.62 -1.02 16 28 H 0.02 0.39 7.13 -51.93 -0.37 0.02 16 29 H 0.06 1.20 4.30 -51.93 -0.22 0.98 16 30 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 31 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 33 H 0.03 0.51 6.86 -51.93 -0.36 0.15 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.41 5.75 5.62 -40.82 -0.23 5.52 16 38 H 0.14 1.20 7.87 -52.49 -0.41 0.78 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.18 2.17 5.22 -52.49 -0.27 1.89 16 LS Contribution 329.22 15.07 4.96 4.96 Total: -1.00 -30.65 329.22 -7.12 -37.77 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.91 Total: 6.07 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.47 Total: -6.56 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 1.02 Total: -43.02 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.16 Total: -15.92 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -3.87 Total: 16.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.65 -7.12 -37.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315760657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.948 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds