Wall clock time and date at job start Tue Mar 31 2020 11:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46800 * 2 1 4 4 C 1.50701 * 109.47145 * 240.00569 * 2 1 3 5 5 H 1.08009 * 119.99651 * 241.34574 * 4 2 1 6 6 C 1.37868 * 120.00338 * 61.34033 * 4 2 1 7 7 N 1.31521 * 120.00453 * 193.97821 * 6 4 2 8 8 Si 1.86801 * 120.00217 * 13.98060 * 6 4 2 9 9 H 1.48505 * 109.47124 * 84.54309 * 8 6 4 10 10 H 1.48497 * 109.47512 * 204.54782 * 8 6 4 11 11 H 1.48505 * 109.46983 * 324.55043 * 8 6 4 12 12 C 1.52998 * 109.47584 * 119.99837 * 2 1 3 13 13 N 1.46496 * 109.47329 * 300.00315 * 12 2 1 14 14 C 1.34773 * 120.00133 * 180.26769 * 13 12 2 15 15 O 1.21580 * 120.00063 * 359.72954 * 14 13 12 16 16 C 1.47642 * 120.00100 * 179.72037 * 14 13 12 17 17 N 1.31092 * 120.39303 * 0.02562 * 16 14 13 18 18 N 1.27932 * 124.25903 * 179.97438 * 17 16 14 19 19 H 0.96996 * 118.24142 * 179.97438 * 18 17 16 20 20 C 1.34892 * 123.51446 * 0.02562 * 18 17 16 21 21 O 1.21735 * 120.77413 * 180.02562 * 20 18 17 22 22 C 1.46944 * 118.45022 * 359.97438 * 20 18 17 23 23 C 1.39129 * 122.91061 * 180.02562 * 22 20 18 24 24 C 1.37866 * 119.34408 * 179.97438 * 23 22 20 25 25 C 1.38881 * 120.74049 * 0.02562 * 24 23 22 26 26 C 1.37883 * 120.79395 * 0.02562 * 25 24 23 27 27 C 1.39060 * 119.39572 * 359.68549 * 26 25 24 28 28 H 1.08998 * 109.47272 * 309.36723 * 1 2 3 29 29 H 1.08992 * 109.47141 * 69.36784 * 1 2 3 30 30 H 1.09004 * 109.46813 * 189.36595 * 1 2 3 31 31 H 1.09008 * 109.47129 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47084 * 299.99863 * 3 2 1 33 33 H 1.08999 * 109.47102 * 60.00497 * 3 2 1 34 34 H 0.96991 * 120.00307 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47488 * 180.02562 * 12 2 1 36 36 H 1.09007 * 109.46656 * 60.00290 * 12 2 1 37 37 H 0.97008 * 119.99791 * 359.97438 * 13 12 2 38 38 H 1.07996 * 120.32634 * 359.95977 * 23 22 20 39 39 H 1.08000 * 119.63523 * 179.97438 * 24 23 22 40 40 H 1.07996 * 119.60177 * 179.97438 * 25 24 23 41 41 H 1.08001 * 120.29956 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6353 -1.6010 -1.1316 6 6 1.7223 -0.2233 -2.4825 7 7 1.9157 -0.9724 -3.5461 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8820 -0.4879 3.6694 15 8 2.5810 -1.4764 3.7810 16 6 1.3949 0.2116 4.8750 17 7 0.6405 1.2779 4.7637 18 7 0.1782 1.9398 5.7561 19 1 -0.3720 2.7173 5.5729 20 6 0.4158 1.6149 7.0436 21 8 -0.0503 2.2805 7.9501 22 6 1.2492 0.4382 7.3263 23 6 1.5525 0.0193 8.6179 24 6 2.3417 -1.0966 8.7985 25 6 2.8341 -1.8018 7.7081 26 6 2.5458 -1.4022 6.4203 27 6 1.7465 -0.2828 6.2159 28 1 -0.3634 0.6518 0.7945 29 1 -0.3633 0.3621 -0.9617 30 1 -0.3633 -1.0140 0.1672 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6979 -0.6297 -4.4269 35 1 3.1301 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 1.1736 0.5631 9.4706 39 1 2.5804 -1.4256 9.7991 40 1 3.4510 -2.6732 7.8708 41 1 2.9333 -1.9563 5.5782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315760657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:11 Heat of formation + Delta-G solvation = -8.368280 kcal Electronic energy + Delta-G solvation = -25840.105438 eV Core-core repulsion = 22106.593978 eV Total energy + Delta-G solvation = -3733.511461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.96980 -40.88114 -39.53356 -39.10170 -38.33813 -35.10121 -34.01323 -33.34761 -32.40159 -31.50513 -28.09896 -27.91985 -27.04945 -26.14662 -25.75346 -23.61156 -22.30224 -20.97342 -20.43844 -20.14589 -18.86304 -18.21291 -17.91006 -17.47415 -17.21065 -16.93065 -16.36808 -16.31905 -15.81373 -15.62631 -15.27306 -15.00688 -14.75792 -14.69943 -14.22687 -14.18129 -13.96760 -13.86989 -13.72936 -13.25495 -12.91410 -12.88948 -12.54634 -12.35205 -12.12968 -11.93237 -11.73012 -11.17234 -11.05691 -11.01376 -10.88090 -10.58641 -10.37204 -10.22574 -10.07381 -9.43182 -8.27143 -6.28206 -0.71438 -0.50281 0.49971 1.25981 1.39463 1.40468 1.42657 1.52910 1.96147 2.02587 2.37493 2.65287 2.78008 3.09399 3.28086 3.51830 3.66414 3.93741 4.10006 4.19974 4.23049 4.37530 4.44734 4.45541 4.52567 4.77808 4.87036 4.89803 4.93992 4.98080 5.07253 5.10515 5.12134 5.21035 5.31804 5.34979 5.46620 5.55424 5.73861 5.78395 5.82038 6.23829 6.32850 6.46908 6.76522 6.86693 7.10136 7.36944 8.89728 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.003243 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.564778 B = 8632.701167 C = 9576.736436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.027 3.973 3 C -0.150 4.150 4 C -0.514 4.514 5 H 0.034 0.966 6 C 0.019 3.981 7 N -0.946 5.946 8 Si 0.940 3.060 9 H -0.283 1.283 10 H -0.318 1.318 11 H -0.205 1.205 12 C 0.154 3.846 13 N -0.690 5.690 14 C 0.587 3.413 15 O -0.551 6.551 16 C 0.060 3.940 17 N -0.189 5.189 18 N -0.450 5.450 19 H 0.454 0.546 20 C 0.515 3.485 21 O -0.530 6.530 22 C -0.161 4.161 23 C -0.061 4.061 24 C -0.104 4.104 25 C -0.079 4.079 26 C -0.109 4.109 27 C -0.048 4.048 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.264 0.736 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.415 0.585 38 H 0.151 0.849 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 4.540 24.999 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 C -0.206 4.206 4 C -0.552 4.552 5 H 0.053 0.947 6 C -0.179 4.179 7 N -0.585 5.585 8 Si 0.770 3.230 9 H -0.210 1.210 10 H -0.248 1.248 11 H -0.129 1.129 12 C 0.031 3.969 13 N -0.342 5.342 14 C 0.370 3.630 15 O -0.428 6.428 16 C -0.121 4.121 17 N -0.014 5.014 18 N -0.200 5.200 19 H 0.302 0.698 20 C 0.309 3.691 21 O -0.407 6.407 22 C -0.167 4.167 23 C -0.080 4.080 24 C -0.123 4.123 25 C -0.097 4.097 26 C -0.129 4.129 27 C -0.052 4.052 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.253 0.747 38 H 0.169 0.831 39 H 0.190 0.810 40 H 0.183 0.817 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.360 4.676 24.858 25.404 hybrid contribution -0.296 0.811 -0.623 1.065 sum -2.656 5.487 24.235 24.990 Atomic orbital electron populations 1.22241 0.96233 1.00785 1.00788 1.18667 0.93697 0.93055 0.92010 1.22323 1.01203 0.96969 1.00143 1.21025 1.32737 1.11150 0.90300 0.94747 1.25800 0.95440 1.01294 0.95354 1.70103 1.50831 1.38207 0.99387 0.86410 0.79412 0.80359 0.76840 1.21040 1.24770 1.12862 1.21232 0.98168 0.95345 0.82165 1.45980 1.51708 1.31850 1.04658 1.17240 0.80201 0.83360 0.82174 1.90656 1.39468 1.26832 1.85827 1.22467 1.01056 0.94677 0.93909 1.70206 1.06424 1.05508 1.19233 1.44187 1.45550 1.28249 1.01981 0.69810 1.19286 0.81080 0.85607 0.83164 1.90897 1.51970 1.53718 1.44079 1.19987 1.03688 0.97230 0.95805 1.21243 0.95753 0.96349 0.94618 1.21777 0.95546 0.93667 1.01273 1.21936 0.96935 0.99649 0.91154 1.22080 0.95774 0.94908 1.00168 1.19323 0.98826 0.97141 0.89940 0.91861 0.93727 0.93710 0.93125 0.94828 0.91044 0.92752 0.92508 0.92688 0.74675 0.83094 0.81016 0.81720 0.82378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 7.53 71.98 0.54 -4.69 16 2 C 0.03 1.08 0.50 -52.93 -0.03 1.06 16 3 C -0.15 -5.40 7.52 71.98 0.54 -4.86 16 4 C -0.51 -27.26 8.62 25.60 0.22 -27.04 16 5 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 6 C 0.02 1.03 5.32 84.65 0.45 1.48 16 7 N -0.95 -57.64 13.96 21.44 0.30 -57.34 16 8 Si 0.94 41.98 22.79 68.60 1.56 43.54 16 9 H -0.28 -12.43 7.10 99.48 0.71 -11.73 16 10 H -0.32 -14.78 7.11 99.48 0.71 -14.08 16 11 H -0.20 -7.72 4.65 99.48 0.46 -7.26 16 12 C 0.15 5.63 4.49 86.38 0.39 6.02 16 13 N -0.69 -20.15 4.99 -466.17 -2.33 -22.48 16 14 C 0.59 17.20 7.80 86.73 0.68 17.88 16 15 O -0.55 -18.60 13.69 -3.97 -0.05 -18.65 16 16 C 0.06 1.49 7.04 44.09 0.31 1.80 16 17 N -0.19 -4.06 10.53 -44.72 -0.47 -4.54 16 18 N -0.45 -8.61 6.09 -176.01 -1.07 -9.68 16 19 H 0.45 6.05 8.89 -220.27 -1.96 4.09 16 20 C 0.52 11.76 8.00 86.51 0.69 12.45 16 21 O -0.53 -14.06 17.50 -4.46 -0.08 -14.14 16 22 C -0.16 -3.53 5.90 -20.00 -0.12 -3.65 16 23 C -0.06 -1.02 9.71 22.40 0.22 -0.80 16 24 C -0.10 -1.24 10.01 22.34 0.22 -1.02 16 25 C -0.08 -1.12 10.01 22.34 0.22 -0.89 16 26 C -0.11 -2.34 9.36 22.38 0.21 -2.13 16 27 C -0.05 -1.15 5.90 -19.95 -0.12 -1.26 16 28 H 0.06 1.82 7.13 -2.39 -0.02 1.80 16 29 H 0.04 1.74 4.30 -2.39 -0.01 1.73 16 30 H 0.04 1.65 8.12 -2.39 -0.02 1.63 16 31 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.03 1.28 2.25 -2.38 -0.01 1.27 16 33 H 0.07 2.01 6.86 -2.39 -0.02 1.99 16 34 H 0.26 15.20 8.31 -92.72 -0.77 14.43 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.41 10.45 5.62 -92.70 -0.52 9.93 16 38 H 0.15 2.16 7.87 -2.91 -0.02 2.14 16 39 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 41 H 0.16 3.91 5.22 -2.91 -0.02 3.90 16 Total: -1.00 -69.54 329.22 0.68 -68.86 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -1.61 Total: 20.10 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 4.43 Total: -5.66 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -3.57 Total: -94.04 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.13 Total: -32.79 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.56 Total: 43.54 kcal Total: -69.54 0.68 -68.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315760657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.489 kcal (2) G-P(sol) polarization free energy of solvation -69.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds