Wall clock time and date at job start Tue Mar 31 2020 12:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47232 * 2 1 4 4 N 1.46496 * 109.47291 * 120.00292 * 2 1 3 5 5 C 1.46500 * 119.99670 * 305.06186 * 4 2 1 6 6 C 1.50698 * 109.47091 * 269.99233 * 5 4 2 7 7 N 1.32420 * 118.52390 * 90.00133 * 6 5 4 8 8 C 1.32394 * 121.52398 * 180.02562 * 7 6 5 9 9 O 1.35271 * 120.89576 * 179.97438 * 8 7 6 10 10 C 1.41424 * 118.21508 * 359.97438 * 8 7 6 11 11 C 1.40006 * 122.12958 * 180.02562 * 10 8 7 12 12 C 1.36341 * 119.50201 * 179.97438 * 11 10 8 13 13 C 1.39251 * 120.90631 * 0.02562 * 12 11 10 14 14 C 1.36283 * 121.04162 * 359.97438 * 13 12 11 15 15 C 1.40174 * 119.58530 * 0.02562 * 14 13 12 16 16 N 1.31148 * 118.53104 * 270.00589 * 6 5 4 17 17 C 1.34778 * 120.00265 * 125.05290 * 4 2 1 18 18 O 1.21687 * 119.99604 * 354.89294 * 17 4 2 19 19 C 1.46375 * 120.00134 * 174.88078 * 17 4 2 20 20 H 1.07997 * 119.99783 * 5.05579 * 19 17 4 21 21 C 1.40042 * 120.00033 * 185.05088 * 19 17 4 22 22 N 1.30668 * 120.00230 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 120.00071 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47058 * 59.99772 * 23 21 19 25 25 H 1.48500 * 109.47260 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46961 * 299.99870 * 23 21 19 27 27 H 1.08999 * 109.46742 * 300.00135 * 1 2 3 28 28 H 1.09005 * 109.47122 * 59.99665 * 1 2 3 29 29 H 1.08999 * 109.47530 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47268 * 240.00353 * 2 1 3 31 31 H 1.08995 * 109.46833 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47248 * 299.99911 * 3 2 1 33 33 H 1.09002 * 109.46500 * 60.00506 * 3 2 1 34 34 H 1.09006 * 109.46783 * 149.99888 * 5 4 2 35 35 H 1.08997 * 109.47584 * 29.99951 * 5 4 2 36 36 H 0.96707 * 114.00360 * 89.99718 * 9 8 7 37 37 H 1.08008 * 120.25090 * 0.02562 * 11 10 8 38 38 H 1.08001 * 119.55121 * 179.97438 * 12 11 10 39 39 H 1.08001 * 119.47898 * 180.02562 * 13 12 11 40 40 H 1.07997 * 120.21126 * 179.97438 * 14 13 12 41 41 H 0.97005 * 120.00642 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5754 -0.2581 2.5238 6 6 2.5200 0.7908 3.0515 7 7 2.2656 2.0627 2.7849 8 6 3.0559 3.0324 3.2184 9 8 2.7841 4.3275 2.9380 10 6 4.1919 2.6778 3.9825 11 6 5.0819 3.6362 4.4821 12 6 6.1603 3.2344 5.2132 13 6 6.3883 1.8848 5.4690 14 6 5.5412 0.9271 4.9971 15 6 4.4223 1.3043 4.2417 16 7 3.5573 0.4031 3.7542 17 6 2.8750 -1.7241 1.0750 18 8 3.1705 -2.1433 -0.0285 19 6 3.4502 -2.3419 2.2709 20 1 3.1267 -2.0248 3.2512 21 6 4.4198 -3.3443 2.1437 22 7 4.8116 -3.7277 0.9576 23 14 5.1533 -4.1333 3.6698 24 1 4.0742 -4.7764 4.4619 25 1 6.1492 -5.1586 3.2670 26 1 5.8191 -3.0926 4.4937 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.5669 -1.1128 3.2003 35 1 0.5711 0.1597 2.4536 36 1 2.2260 4.7638 3.5963 37 1 4.9151 4.6860 4.2904 38 1 6.8475 3.9730 5.5987 39 1 7.2496 1.5923 6.0513 40 1 5.7311 -0.1158 5.2032 41 1 5.4829 -4.4223 0.8694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355661137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:55 Heat of formation + Delta-G solvation = -22.611957 kcal Electronic energy + Delta-G solvation = -27011.594376 eV Core-core repulsion = 23277.465263 eV Total energy + Delta-G solvation = -3734.129113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.46961 -40.12933 -38.98642 -38.46505 -36.69660 -34.57888 -34.20062 -33.40349 -32.28161 -31.03664 -28.35182 -28.04977 -27.91159 -25.49175 -24.07175 -23.20717 -22.98137 -20.50861 -19.91050 -19.53815 -18.80555 -18.44536 -17.66214 -17.11885 -16.57877 -16.29952 -16.03267 -15.96448 -15.49675 -15.10279 -14.98692 -14.86194 -14.43107 -14.22755 -13.66160 -13.62064 -13.43861 -13.26030 -13.22901 -12.98129 -12.75037 -12.72611 -12.62997 -12.49346 -12.17151 -12.14853 -12.04151 -11.77511 -11.62773 -11.34366 -10.87261 -10.26902 -10.10466 -9.75198 -9.34335 -9.18837 -8.23911 -6.71729 -0.76886 -0.32421 0.83500 1.36745 1.40985 1.51780 1.89911 2.23873 2.27169 2.46691 2.74304 3.05496 3.14139 3.32216 3.60533 3.67886 3.89196 4.05093 4.09237 4.24098 4.25745 4.33123 4.43759 4.47334 4.56909 4.72650 4.76296 4.80818 4.85721 4.98144 5.04651 5.06247 5.20398 5.30058 5.37360 5.40990 5.45731 5.48252 5.75482 5.82278 6.05462 6.24386 6.45811 6.53197 6.96834 7.18475 7.40577 8.49963 8.72046 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010447 B = 0.006890 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.539847 B = 4063.010250 C = 6228.683422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.130 3.870 3 C -0.155 4.155 4 N -0.627 5.627 5 C 0.193 3.807 6 C 0.323 3.677 7 N -0.540 5.540 8 C 0.396 3.604 9 O -0.465 6.465 10 C -0.193 4.193 11 C -0.069 4.069 12 C -0.117 4.117 13 C -0.066 4.066 14 C -0.130 4.130 15 C 0.137 3.863 16 N -0.506 5.506 17 C 0.538 3.462 18 O -0.633 6.633 19 C -0.536 4.536 20 H 0.097 0.903 21 C 0.029 3.971 22 N -0.828 5.828 23 Si 0.984 3.016 24 H -0.252 1.252 25 H -0.277 1.277 26 H -0.254 1.254 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.047 0.953 31 H -0.001 1.001 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.431 0.569 37 H 0.167 0.833 38 H 0.173 0.827 39 H 0.166 0.834 40 H 0.127 0.873 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 18.401 13.659 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.026 3.974 3 C -0.213 4.213 4 N -0.363 5.363 5 C 0.067 3.933 6 C 0.052 3.948 7 N -0.267 5.267 8 C 0.195 3.805 9 O -0.276 6.276 10 C -0.198 4.198 11 C -0.089 4.089 12 C -0.134 4.134 13 C -0.086 4.086 14 C -0.149 4.149 15 C 0.011 3.989 16 N -0.222 5.222 17 C 0.345 3.655 18 O -0.521 6.521 19 C -0.573 4.573 20 H 0.115 0.885 21 C -0.185 4.185 22 N -0.459 5.459 23 Si 0.804 3.196 24 H -0.176 1.176 25 H -0.202 1.202 26 H -0.178 1.178 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.019 0.981 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.132 0.868 36 H 0.295 0.705 37 H 0.184 0.816 38 H 0.191 0.809 39 H 0.183 0.817 40 H 0.145 0.855 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.668 17.219 12.166 21.149 hybrid contribution 0.827 -0.104 0.487 0.965 sum -0.841 17.115 12.653 21.301 Atomic orbital electron populations 1.21984 0.92789 1.01696 1.03404 1.20837 0.95560 0.92344 0.88681 1.22330 0.97903 0.96562 1.04509 1.47899 1.49689 1.34091 1.04574 1.20079 0.94471 0.93767 0.84978 1.23671 0.92058 0.89296 0.89768 1.67597 1.34452 1.01389 1.23216 1.19739 0.88266 0.85904 0.86583 1.84617 1.73255 1.16528 1.53218 1.19829 1.00545 0.95826 1.03645 1.21231 0.92903 0.99749 0.95022 1.21462 0.97784 0.96357 0.97843 1.21478 0.98198 0.92752 0.96219 1.20962 0.93755 1.01530 0.98689 1.19487 0.95283 0.88758 0.95392 1.68786 1.03529 1.37598 1.12271 1.18782 0.77752 0.78757 0.90176 1.90530 1.64927 1.66156 1.30441 1.21435 1.22719 1.20029 0.93073 0.88464 1.26914 0.95721 0.95984 0.99878 1.70214 1.24841 1.24456 1.26346 0.85270 0.78541 0.78056 0.77722 1.17635 1.20241 1.17811 0.90614 0.90045 0.93643 0.93461 0.98139 0.90859 0.88135 0.88714 0.86776 0.70479 0.81580 0.80910 0.81673 0.85456 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.07 71.98 0.65 -3.89 16 2 C 0.13 5.59 3.25 44.99 0.15 5.74 16 3 C -0.15 -6.01 8.63 71.98 0.62 -5.39 16 4 N -0.63 -30.55 2.39 -807.19 -1.93 -32.48 16 5 C 0.19 7.73 5.06 85.63 0.43 8.16 16 6 C 0.32 12.73 6.69 138.75 0.93 13.66 16 7 N -0.54 -18.29 7.29 -299.86 -2.19 -20.48 16 8 C 0.40 11.21 7.89 85.39 0.67 11.88 16 9 O -0.47 -8.99 12.94 -85.55 -1.11 -10.10 16 10 C -0.19 -5.47 5.75 -21.22 -0.12 -5.59 16 11 C -0.07 -1.30 9.61 22.26 0.21 -1.09 16 12 C -0.12 -1.83 9.96 22.07 0.22 -1.61 16 13 C -0.07 -1.29 9.95 22.06 0.22 -1.07 16 14 C -0.13 -3.89 10.01 22.28 0.22 -3.66 16 15 C 0.14 4.84 6.61 40.12 0.27 5.11 16 16 N -0.51 -21.20 9.09 -181.74 -1.65 -22.85 16 17 C 0.54 32.94 7.59 86.36 0.66 33.59 16 18 O -0.63 -44.79 14.38 -4.31 -0.06 -44.85 16 19 C -0.54 -31.57 8.33 24.83 0.21 -31.36 16 20 H 0.10 5.29 5.26 -2.91 -0.02 5.27 16 21 C 0.03 1.69 5.50 85.30 0.47 2.16 16 22 N -0.83 -53.12 11.84 21.83 0.26 -52.86 16 23 Si 0.98 43.42 29.56 68.60 2.03 45.45 16 24 H -0.25 -10.42 7.11 99.48 0.71 -9.72 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 27 H 0.08 2.11 6.52 -2.39 -0.02 2.09 16 28 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 2.42 6.91 -2.38 -0.02 2.41 16 31 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.10 3.64 4.85 -2.39 -0.01 3.63 16 34 H 0.09 3.94 6.26 -2.38 -0.01 3.92 16 35 H 0.11 3.72 6.17 -2.39 -0.01 3.70 16 36 H 0.43 3.05 9.06 -74.05 -0.67 2.38 16 37 H 0.17 2.00 7.73 -2.91 -0.02 1.97 16 38 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 41 H 0.27 15.83 8.29 -92.70 -0.77 15.06 16 Total: -1.00 -90.08 340.48 1.58 -88.50 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.42 Total: 23.02 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 5.81 Total: 26.64 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -5.51 Total: -128.67 kcal Atomic # 8 Polarization: -53.78 SS G_CDS: -1.17 Total: -54.95 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -90.08 1.58 -88.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355661137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.890 kcal (2) G-P(sol) polarization free energy of solvation -90.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds