Wall clock time and date at job start Tue Mar 31 2020 10:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50699 * 109.47146 * 2 1 4 4 N 1.30353 * 126.18197 * 90.02230 * 3 2 1 5 5 N 1.28657 * 109.53961 * 180.02562 * 4 3 2 6 6 C 1.31276 * 109.25240 * 0.02562 * 5 4 3 7 7 C 1.47755 * 126.38970 * 180.02562 * 6 5 4 8 8 C 1.39639 * 120.07354 * 179.74924 * 7 6 5 9 9 C 1.37779 * 119.92603 * 179.78569 * 8 7 6 10 10 C 1.39032 * 120.07248 * 0.48698 * 9 8 7 11 11 N 1.39733 * 119.92834 * 179.71755 * 10 9 8 12 12 C 1.34780 * 120.00133 * 213.49089 * 11 10 9 13 13 O 1.21281 * 120.00068 * 5.27724 * 12 11 10 14 14 C 1.50699 * 119.99981 * 185.27723 * 12 11 10 15 15 C 1.52994 * 109.47232 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47232 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00215 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00163 * 180.02562 * 16 15 14 19 19 N 1.31523 * 119.99882 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00315 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47110 * 59.99901 * 20 18 16 22 22 H 1.48499 * 109.47404 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46819 * 300.00145 * 20 18 16 24 24 C 1.39030 * 120.14693 * 359.74542 * 10 9 8 25 25 C 1.37781 * 120.07451 * 0.02562 * 24 10 9 26 26 O 1.34458 * 126.18371 * 269.71751 * 3 2 1 27 27 H 1.09003 * 109.46996 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47129 * 300.00059 * 1 2 3 29 29 H 1.09004 * 109.46476 * 60.00034 * 1 2 3 30 30 H 1.08993 * 109.46661 * 120.00430 * 2 1 3 31 31 H 1.09002 * 109.46868 * 240.00406 * 2 1 3 32 32 H 1.08004 * 120.03657 * 359.97438 * 8 7 6 33 33 H 1.08002 * 119.96551 * 180.25204 * 9 8 7 34 34 H 0.97006 * 119.99671 * 33.49320 * 11 10 9 35 35 H 1.09003 * 109.47384 * 300.00517 * 14 12 11 36 36 H 1.09009 * 109.46729 * 60.00301 * 14 12 11 37 37 H 1.08999 * 109.47565 * 300.00259 * 15 14 12 38 38 H 1.09002 * 109.47008 * 60.00434 * 15 14 12 39 39 H 0.96999 * 119.99488 * 179.97438 * 19 18 16 40 40 H 1.08001 * 119.96643 * 179.97438 * 24 10 9 41 41 H 1.07998 * 120.04165 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2893 2.1462 1.0521 5 7 2.6996 3.3086 0.6837 6 6 2.7182 3.3654 -0.6277 7 6 3.1269 4.5235 -1.4493 8 6 3.1004 4.4372 -2.8427 9 6 3.4780 5.5204 -3.6058 10 6 3.8948 6.6951 -2.9900 11 7 4.2827 7.7899 -3.7668 12 6 5.2580 8.6126 -3.3326 13 8 5.8645 8.3503 -2.3156 14 6 5.5948 9.8584 -4.1108 15 6 6.7275 10.6086 -3.4072 16 6 7.0647 11.8540 -4.1858 17 1 6.5249 12.0874 -5.0916 18 6 8.0625 12.6956 -3.7417 19 7 8.7203 12.4112 -2.6389 20 14 8.4801 14.2398 -4.7063 21 1 7.2821 15.1137 -4.7845 22 1 9.5804 14.9673 -4.0241 23 1 8.9103 13.8656 -6.0776 24 6 3.9270 6.7828 -1.6028 25 6 3.5462 5.7049 -0.8338 26 8 2.3021 2.1674 -1.0852 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.7813 3.5233 -3.3218 33 1 3.4538 5.4557 -4.6836 34 1 3.8500 7.9578 -4.6186 35 1 5.9106 9.5838 -5.1174 36 1 4.7153 10.4998 -4.1682 37 1 6.4113 10.8832 -2.4009 38 1 7.6070 9.9674 -3.3495 39 1 9.4225 13.0031 -2.3267 40 1 4.2517 7.6966 -1.1274 41 1 3.5719 5.7734 0.2437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360326023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:37 Heat of formation + Delta-G solvation = 14.014327 kcal Electronic energy + Delta-G solvation = -24068.170074 eV Core-core repulsion = 20335.629195 eV Total energy + Delta-G solvation = -3732.540878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.35586 -40.47153 -38.55225 -36.39045 -35.24117 -34.57005 -33.58554 -31.73844 -31.30938 -30.84620 -28.84052 -26.06112 -25.17232 -24.25104 -23.28727 -22.30913 -21.97112 -21.25547 -19.82486 -18.14048 -17.62833 -17.43571 -17.07185 -16.53397 -15.94054 -15.63112 -15.29740 -14.82016 -14.55102 -14.46372 -14.32192 -13.66684 -13.51138 -13.47572 -13.14809 -12.78566 -12.63317 -12.49338 -12.38919 -12.23620 -12.06773 -11.84870 -11.57067 -11.27100 -11.11896 -10.97358 -10.79726 -10.67537 -10.07187 -9.82255 -9.72584 -9.41563 -9.20124 -9.12912 -8.38545 -8.09409 -6.02053 -4.07318 0.24695 1.17988 1.38851 1.90138 2.24176 2.91937 3.13020 3.30833 3.36253 3.37535 3.46100 3.63054 4.02179 4.36982 4.42264 4.51706 4.65082 4.68805 4.76577 4.88557 5.05369 5.11450 5.15051 5.19080 5.29562 5.33061 5.37480 5.40225 5.48488 5.59800 5.80398 5.95560 6.02991 6.04803 6.15210 6.21609 6.34437 6.72898 6.81379 7.47968 7.65799 7.74574 7.98126 8.05809 8.26660 8.43318 9.00130 9.56816 11.08692 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.047384 B = 0.001894 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.769111 B =14777.665167 C =15206.812857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.025 4.025 3 C 0.155 3.845 4 N -0.282 5.282 5 N -0.283 5.283 6 C 0.225 3.775 7 C -0.064 4.064 8 C -0.059 4.059 9 C -0.158 4.158 10 C 0.193 3.807 11 N -0.686 5.686 12 C 0.509 3.491 13 O -0.506 6.506 14 C -0.129 4.129 15 C 0.036 3.964 16 C -0.531 4.531 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.888 5.888 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.128 4.128 25 C -0.039 4.039 26 O -0.222 6.222 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.412 0.588 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.262 0.738 40 H 0.150 0.850 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.851 -23.715 -1.291 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.063 4.063 3 C -0.056 4.056 4 N -0.129 5.129 5 N -0.130 5.130 6 C 0.018 3.982 7 C -0.067 4.067 8 C -0.080 4.080 9 C -0.179 4.179 10 C 0.096 3.904 11 N -0.332 5.332 12 C 0.299 3.701 13 O -0.378 6.378 14 C -0.169 4.169 15 C -0.002 4.002 16 C -0.569 4.569 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.526 5.526 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.148 4.148 25 C -0.059 4.059 26 O -0.103 6.103 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.248 0.752 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.167 0.833 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.077 -23.397 0.825 28.978 hybrid contribution -0.002 0.538 -2.168 2.234 sum -17.078 -22.859 -1.344 28.566 Atomic orbital electron populations 1.21813 0.92627 1.03359 1.03205 1.20154 0.97144 0.83287 1.05755 1.28025 1.00008 0.98017 0.79538 1.74361 1.14451 0.98479 1.25588 1.74771 1.17436 1.12467 1.08340 1.25538 0.97161 0.85008 0.90452 1.17135 1.08747 0.89405 0.91409 1.20921 0.96955 0.98519 0.91558 1.20792 1.05362 0.91366 1.00341 1.18122 0.93673 0.87412 0.91196 1.44087 1.38861 1.26535 1.23708 1.21956 0.77261 0.84742 0.86154 1.90711 1.49234 1.72927 1.24944 1.21939 1.03233 0.91750 0.99941 1.18929 0.91467 0.94017 0.95753 1.21141 1.18962 1.07168 1.09649 0.92569 1.25024 0.96103 0.98116 0.95058 1.69984 1.23167 1.37716 1.21782 0.86631 0.78025 0.83117 0.80030 1.20215 1.21245 1.20235 1.21223 1.01104 1.00427 0.92069 1.21054 0.93786 0.90109 1.00963 1.84826 1.64393 1.22992 1.38046 0.90444 0.91529 0.92025 0.87055 0.88461 0.84989 0.84665 0.75165 0.89714 0.89556 0.95649 0.95671 0.92796 0.83287 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.90 37.16 0.37 -0.28 16 2 C -0.02 -0.13 6.56 -27.88 -0.18 -0.31 16 3 C 0.15 1.58 7.73 -12.91 -0.10 1.48 16 4 N -0.28 -3.77 12.22 32.58 0.40 -3.37 16 5 N -0.28 -4.14 11.91 32.06 0.38 -3.75 16 6 C 0.23 2.91 7.98 -13.90 -0.11 2.80 16 7 C -0.06 -0.78 5.87 -104.96 -0.62 -1.40 16 8 C -0.06 -0.60 9.72 -39.23 -0.38 -0.98 16 9 C -0.16 -1.59 9.94 -39.45 -0.39 -1.98 16 10 C 0.19 2.46 6.28 -83.67 -0.53 1.93 16 11 N -0.69 -8.67 5.33 -9.83 -0.05 -8.72 16 12 C 0.51 8.85 7.56 -10.98 -0.08 8.77 16 13 O -0.51 -10.89 13.66 5.56 0.08 -10.81 16 14 C -0.13 -2.37 5.64 -27.89 -0.16 -2.53 16 15 C 0.04 0.92 4.26 -27.89 -0.12 0.80 16 16 C -0.53 -14.53 9.11 -34.44 -0.31 -14.85 16 17 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.13 -1.80 8.63 -39.45 -0.34 -2.14 16 25 C -0.04 -0.51 9.69 -39.22 -0.38 -0.89 16 26 O -0.22 -2.51 10.67 3.85 0.04 -2.47 16 27 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.13 1.04 7.93 -52.48 -0.42 0.62 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.41 3.63 8.82 -40.82 -0.36 3.27 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.09 1.43 8.14 -51.92 -0.42 1.00 16 37 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 40 H 0.15 2.37 6.41 -52.49 -0.34 2.04 16 41 H 0.14 1.77 7.86 -52.49 -0.41 1.36 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -35.20 360.58 -6.73 -41.93 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.29 Total: -0.36 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -3.43 Total: -7.99 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 1.46 Total: -41.91 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.12 Total: -13.28 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.20 -6.73 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360326023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.943 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds