Wall clock time and date at job start Tue Mar 31 2020 10:30:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.50699 * 109.47146 * 2 1
4 4 N 1.30353 * 126.18197 * 90.02230 * 3 2 1
5 5 N 1.28657 * 109.53961 * 180.02562 * 4 3 2
6 6 C 1.31276 * 109.25240 * 0.02562 * 5 4 3
7 7 C 1.47755 * 126.38970 * 180.02562 * 6 5 4
8 8 C 1.39639 * 120.07354 * 179.74924 * 7 6 5
9 9 C 1.37779 * 119.92603 * 179.78569 * 8 7 6
10 10 C 1.39032 * 120.07248 * 0.48698 * 9 8 7
11 11 N 1.39733 * 119.92834 * 179.71755 * 10 9 8
12 12 C 1.34780 * 120.00133 * 213.49089 * 11 10 9
13 13 O 1.21281 * 120.00068 * 5.27724 * 12 11 10
14 14 C 1.50699 * 119.99981 * 185.27723 * 12 11 10
15 15 C 1.52994 * 109.47232 * 179.97438 * 14 12 11
16 16 C 1.50699 * 109.47232 * 179.97438 * 15 14 12
17 17 H 1.07995 * 120.00215 * 0.02562 * 16 15 14
18 18 C 1.37878 * 120.00163 * 180.02562 * 16 15 14
19 19 N 1.31523 * 119.99882 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 120.00315 * 180.02562 * 18 16 15
21 21 H 1.48497 * 109.47110 * 59.99901 * 20 18 16
22 22 H 1.48499 * 109.47404 * 180.02562 * 20 18 16
23 23 H 1.48507 * 109.46819 * 300.00145 * 20 18 16
24 24 C 1.39030 * 120.14693 * 359.74542 * 10 9 8
25 25 C 1.37781 * 120.07451 * 0.02562 * 24 10 9
26 26 O 1.34458 * 126.18371 * 269.71751 * 3 2 1
27 27 H 1.09003 * 109.46996 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47129 * 300.00059 * 1 2 3
29 29 H 1.09004 * 109.46476 * 60.00034 * 1 2 3
30 30 H 1.08993 * 109.46661 * 120.00430 * 2 1 3
31 31 H 1.09002 * 109.46868 * 240.00406 * 2 1 3
32 32 H 1.08004 * 120.03657 * 359.97438 * 8 7 6
33 33 H 1.08002 * 119.96551 * 180.25204 * 9 8 7
34 34 H 0.97006 * 119.99671 * 33.49320 * 11 10 9
35 35 H 1.09003 * 109.47384 * 300.00517 * 14 12 11
36 36 H 1.09009 * 109.46729 * 60.00301 * 14 12 11
37 37 H 1.08999 * 109.47565 * 300.00259 * 15 14 12
38 38 H 1.09002 * 109.47008 * 60.00434 * 15 14 12
39 39 H 0.96999 * 119.99488 * 179.97438 * 19 18 16
40 40 H 1.08001 * 119.96643 * 179.97438 * 24 10 9
41 41 H 1.07998 * 120.04165 * 179.97438 * 25 24 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2893 2.1462 1.0521
5 7 2.6996 3.3086 0.6837
6 6 2.7182 3.3654 -0.6277
7 6 3.1269 4.5235 -1.4493
8 6 3.1004 4.4372 -2.8427
9 6 3.4780 5.5204 -3.6058
10 6 3.8948 6.6951 -2.9900
11 7 4.2827 7.7899 -3.7668
12 6 5.2580 8.6126 -3.3326
13 8 5.8645 8.3503 -2.3156
14 6 5.5948 9.8584 -4.1108
15 6 6.7275 10.6086 -3.4072
16 6 7.0647 11.8540 -4.1858
17 1 6.5249 12.0874 -5.0916
18 6 8.0625 12.6956 -3.7417
19 7 8.7203 12.4112 -2.6389
20 14 8.4801 14.2398 -4.7063
21 1 7.2821 15.1137 -4.7845
22 1 9.5804 14.9673 -4.0241
23 1 8.9103 13.8656 -6.0776
24 6 3.9270 6.7828 -1.6028
25 6 3.5462 5.7049 -0.8338
26 8 2.3021 2.1674 -1.0852
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3632 0.5139 -0.8901
30 1 1.8933 -0.5139 0.8899
31 1 1.8934 -0.5138 -0.8900
32 1 2.7813 3.5233 -3.3218
33 1 3.4538 5.4557 -4.6836
34 1 3.8500 7.9578 -4.6186
35 1 5.9106 9.5838 -5.1174
36 1 4.7153 10.4998 -4.1682
37 1 6.4113 10.8832 -2.4009
38 1 7.6070 9.9674 -3.3495
39 1 9.4225 13.0031 -2.3267
40 1 4.2517 7.6966 -1.1274
41 1 3.5719 5.7734 0.2437
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000360326023.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:30:36
Heat of formation + Delta-G solvation = -13.073579 kcal
Electronic energy + Delta-G solvation = -24069.344693 eV
Core-core repulsion = 20335.629195 eV
Total energy + Delta-G solvation = -3733.715498 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-45.26489 -41.65004 -39.71342 -37.31828 -36.28881 -35.57070 -35.28036 -33.21669
-32.31886 -32.09110 -29.84449 -27.79212 -25.93836 -25.35406 -24.32368 -23.62455
-22.72065 -22.53778 -21.19233 -19.12241 -18.81220 -18.55635 -18.42633 -17.59250
-17.39659 -16.78431 -16.47620 -16.23336 -15.65417 -15.46670 -15.14399 -14.87292
-14.66670 -14.42337 -14.19717 -14.03426 -13.71925 -13.68893 -13.53182 -13.25568
-13.07987 -12.79864 -12.77687 -12.52557 -12.51285 -12.27370 -11.93019 -11.91054
-11.82488 -11.65244 -11.32336 -10.90470 -10.68463 -10.54558 -10.12859 -9.11969
-8.17484 -6.31367 -0.69588 0.26359 0.47686 1.05129 1.25472 1.43444
1.47338 1.55052 1.63114 1.99757 2.44186 2.66085 2.67037 3.16104
3.26996 3.65398 3.76602 3.84455 3.96483 4.11831 4.14288 4.17096
4.21428 4.30905 4.40204 4.44454 4.52207 4.55110 4.75547 4.89544
4.92603 4.98358 5.02145 5.06911 5.17903 5.25503 5.27723 5.31945
5.50834 5.62995 5.78535 5.85919 6.17130 6.40790 6.87062 7.13743
7.15168 7.39164 8.94706
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.047384 B = 0.001894 C = 0.001841
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 590.769111 B =14777.665167 C =15206.812857
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.025 4.025
3 C 0.173 3.827
4 N -0.322 5.322
5 N -0.317 5.317
6 C 0.219 3.781
7 C -0.067 4.067
8 C -0.048 4.048
9 C -0.135 4.135
10 C 0.175 3.825
11 N -0.661 5.661
12 C 0.513 3.487
13 O -0.559 6.559
14 C -0.116 4.116
15 C 0.039 3.961
16 C -0.543 4.543
17 H 0.079 0.921
18 C -0.007 4.007
19 N -0.938 5.938
20 Si 0.972 3.028
21 H -0.262 1.262
22 H -0.291 1.291
23 H -0.262 1.262
24 C -0.147 4.147
25 C -0.049 4.049
26 O -0.219 6.219
27 H 0.104 0.896
28 H 0.050 0.950
29 H 0.058 0.942
30 H 0.125 0.875
31 H 0.125 0.875
32 H 0.165 0.835
33 H 0.178 0.822
34 H 0.434 0.566
35 H 0.114 0.886
36 H 0.113 0.887
37 H -0.016 1.016
38 H -0.016 1.016
39 H 0.262 0.738
40 H 0.119 0.881
41 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.821 -25.467 -4.905 32.642
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.064 4.064
3 C -0.038 4.038
4 N -0.168 5.168
5 N -0.163 5.163
6 C 0.011 3.989
7 C -0.070 4.070
8 C -0.068 4.068
9 C -0.155 4.155
10 C 0.078 3.922
11 N -0.308 5.308
12 C 0.303 3.697
13 O -0.436 6.436
14 C -0.156 4.156
15 C 0.001 3.999
16 C -0.581 4.581
17 H 0.097 0.903
18 C -0.204 4.204
19 N -0.578 5.578
20 Si 0.796 3.204
21 H -0.187 1.187
22 H -0.216 1.216
23 H -0.186 1.186
24 C -0.167 4.167
25 C -0.070 4.070
26 O -0.099 6.099
27 H 0.123 0.877
28 H 0.069 0.931
29 H 0.077 0.923
30 H 0.144 0.856
31 H 0.143 0.857
32 H 0.183 0.817
33 H 0.195 0.805
34 H 0.275 0.725
35 H 0.132 0.868
36 H 0.131 0.869
37 H 0.002 0.998
38 H 0.002 0.998
39 H 0.071 0.929
40 H 0.137 0.863
41 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -19.113 -25.177 -2.825 31.736
hybrid contribution 0.527 0.910 -0.992 1.445
sum -18.587 -24.267 -3.816 30.805
Atomic orbital electron populations
1.21818 0.91673 1.04874 1.02303 1.20579 0.97713 0.80262 1.07816
1.29119 0.97146 0.98988 0.78553 1.74304 1.16625 0.98741 1.27124
1.74702 1.18488 1.13590 1.09560 1.25584 0.97447 0.85741 0.90166
1.17259 1.08515 0.88652 0.92553 1.21290 0.95448 0.99702 0.90366
1.21145 1.02655 0.89447 1.02255 1.18266 0.94890 0.88441 0.90556
1.43598 1.37345 1.25593 1.24244 1.21671 0.77807 0.84985 0.85203
1.90711 1.51575 1.74144 1.27162 1.21680 1.01541 0.92104 1.00271
1.18724 0.92552 0.94067 0.94560 1.21692 1.18785 1.07419 1.10205
0.90317 1.26125 0.96115 1.02144 0.96056 1.70173 1.24103 1.39388
1.24086 0.85393 0.77924 0.78388 0.78652 1.18712 1.21639 1.18636
1.21049 1.02508 0.99795 0.93377 1.20944 0.94708 0.90656 1.00646
1.84835 1.64400 1.22437 1.38199 0.87697 0.93050 0.92329 0.85648
0.85667 0.81729 0.80516 0.72495 0.86782 0.86931 0.99797 0.99763
0.92948 0.86276 0.84970
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.90 9.90 71.99 0.71 -0.18 16
2 C -0.03 -0.20 6.56 29.85 0.20 0.00 16
3 C 0.17 3.31 7.73 88.33 0.68 4.00 16
4 N -0.32 -8.70 12.22 -165.31 -2.02 -10.72 16
5 N -0.32 -9.57 11.91 -166.31 -1.98 -11.55 16
6 C 0.22 5.60 7.98 87.29 0.70 6.29 16
7 C -0.07 -1.59 5.87 -20.08 -0.12 -1.71 16
8 C -0.05 -0.82 9.72 22.50 0.22 -0.60 16
9 C -0.14 -2.23 9.94 22.35 0.22 -2.00 16
10 C 0.18 4.25 6.28 38.26 0.24 4.49 16
11 N -0.66 -15.56 5.33 -303.41 -1.62 -17.17 16
12 C 0.51 17.98 7.56 87.66 0.66 18.64 16
13 O -0.56 -25.60 13.66 -3.03 -0.04 -25.64 16
14 C -0.12 -4.21 5.64 29.85 0.17 -4.04 16
15 C 0.04 2.06 4.26 29.85 0.13 2.18 16
16 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16
17 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16
18 C -0.01 -0.39 5.46 84.65 0.46 0.07 16
19 N -0.94 -58.80 13.29 21.45 0.28 -58.51 16
20 Si 0.97 43.45 29.54 68.60 2.03 45.47 16
21 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16
22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16
23 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16
24 C -0.15 -4.36 8.63 22.35 0.19 -4.17 16
25 C -0.05 -1.36 9.69 22.50 0.22 -1.14 16
26 O -0.22 -4.56 10.67 -9.14 -0.10 -4.66 16
27 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16
28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16
29 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16
30 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16
31 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16
32 H 0.17 1.80 7.93 -2.91 -0.02 1.78 16
33 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16
34 H 0.43 6.10 8.82 -92.70 -0.82 5.29 16
35 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16
36 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16
37 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16
38 H -0.02 -0.97 8.10 -2.39 -0.02 -0.99 16
39 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16
40 H 0.12 4.23 6.41 -2.91 -0.02 4.22 16
41 H 0.13 3.72 7.86 -2.91 -0.02 3.70 16
Total: -1.00 -83.42 360.58 1.72 -81.70
By element:
Atomic # 1 Polarization: 8.61 SS G_CDS: 0.25 Total: 8.86 kcal
Atomic # 6 Polarization: -12.71 SS G_CDS: 4.92 Total: -7.79 kcal
Atomic # 7 Polarization: -92.61 SS G_CDS: -5.33 Total: -97.95 kcal
Atomic # 8 Polarization: -30.16 SS G_CDS: -0.14 Total: -30.30 kcal
Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal
Total: -83.42 1.72 -81.70 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000360326023.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.631 kcal
(2) G-P(sol) polarization free energy of solvation -83.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.791 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.705 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.074 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds