Wall clock time and date at job start Tue Mar 31 2020 10:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50699 * 109.47146 * 2 1 4 4 N 1.30353 * 126.18197 * 90.02230 * 3 2 1 5 5 N 1.28657 * 109.53961 * 180.02562 * 4 3 2 6 6 C 1.31276 * 109.25240 * 0.02562 * 5 4 3 7 7 C 1.47755 * 126.38970 * 180.02562 * 6 5 4 8 8 C 1.39639 * 120.07354 * 179.74924 * 7 6 5 9 9 C 1.37779 * 119.92603 * 179.78569 * 8 7 6 10 10 C 1.39032 * 120.07248 * 0.48698 * 9 8 7 11 11 N 1.39733 * 119.92834 * 179.71755 * 10 9 8 12 12 C 1.34780 * 120.00133 * 213.49089 * 11 10 9 13 13 O 1.21281 * 120.00068 * 5.27724 * 12 11 10 14 14 C 1.50699 * 119.99981 * 185.27723 * 12 11 10 15 15 C 1.52994 * 109.47232 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47232 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00215 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00163 * 180.02562 * 16 15 14 19 19 N 1.31523 * 119.99882 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00315 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47110 * 59.99901 * 20 18 16 22 22 H 1.48499 * 109.47404 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46819 * 300.00145 * 20 18 16 24 24 C 1.39030 * 120.14693 * 359.74542 * 10 9 8 25 25 C 1.37781 * 120.07451 * 0.02562 * 24 10 9 26 26 O 1.34458 * 126.18371 * 269.71751 * 3 2 1 27 27 H 1.09003 * 109.46996 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47129 * 300.00059 * 1 2 3 29 29 H 1.09004 * 109.46476 * 60.00034 * 1 2 3 30 30 H 1.08993 * 109.46661 * 120.00430 * 2 1 3 31 31 H 1.09002 * 109.46868 * 240.00406 * 2 1 3 32 32 H 1.08004 * 120.03657 * 359.97438 * 8 7 6 33 33 H 1.08002 * 119.96551 * 180.25204 * 9 8 7 34 34 H 0.97006 * 119.99671 * 33.49320 * 11 10 9 35 35 H 1.09003 * 109.47384 * 300.00517 * 14 12 11 36 36 H 1.09009 * 109.46729 * 60.00301 * 14 12 11 37 37 H 1.08999 * 109.47565 * 300.00259 * 15 14 12 38 38 H 1.09002 * 109.47008 * 60.00434 * 15 14 12 39 39 H 0.96999 * 119.99488 * 179.97438 * 19 18 16 40 40 H 1.08001 * 119.96643 * 179.97438 * 24 10 9 41 41 H 1.07998 * 120.04165 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2893 2.1462 1.0521 5 7 2.6996 3.3086 0.6837 6 6 2.7182 3.3654 -0.6277 7 6 3.1269 4.5235 -1.4493 8 6 3.1004 4.4372 -2.8427 9 6 3.4780 5.5204 -3.6058 10 6 3.8948 6.6951 -2.9900 11 7 4.2827 7.7899 -3.7668 12 6 5.2580 8.6126 -3.3326 13 8 5.8645 8.3503 -2.3156 14 6 5.5948 9.8584 -4.1108 15 6 6.7275 10.6086 -3.4072 16 6 7.0647 11.8540 -4.1858 17 1 6.5249 12.0874 -5.0916 18 6 8.0625 12.6956 -3.7417 19 7 8.7203 12.4112 -2.6389 20 14 8.4801 14.2398 -4.7063 21 1 7.2821 15.1137 -4.7845 22 1 9.5804 14.9673 -4.0241 23 1 8.9103 13.8656 -6.0776 24 6 3.9270 6.7828 -1.6028 25 6 3.5462 5.7049 -0.8338 26 8 2.3021 2.1674 -1.0852 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.7813 3.5233 -3.3218 33 1 3.4538 5.4557 -4.6836 34 1 3.8500 7.9578 -4.6186 35 1 5.9106 9.5838 -5.1174 36 1 4.7153 10.4998 -4.1682 37 1 6.4113 10.8832 -2.4009 38 1 7.6070 9.9674 -3.3495 39 1 9.4225 13.0031 -2.3267 40 1 4.2517 7.6966 -1.1274 41 1 3.5719 5.7734 0.2437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360326023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:36 Heat of formation + Delta-G solvation = -13.073579 kcal Electronic energy + Delta-G solvation = -24069.344693 eV Core-core repulsion = 20335.629195 eV Total energy + Delta-G solvation = -3733.715498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.26489 -41.65004 -39.71342 -37.31828 -36.28881 -35.57070 -35.28036 -33.21669 -32.31886 -32.09110 -29.84449 -27.79212 -25.93836 -25.35406 -24.32368 -23.62455 -22.72065 -22.53778 -21.19233 -19.12241 -18.81220 -18.55635 -18.42633 -17.59250 -17.39659 -16.78431 -16.47620 -16.23336 -15.65417 -15.46670 -15.14399 -14.87292 -14.66670 -14.42337 -14.19717 -14.03426 -13.71925 -13.68893 -13.53182 -13.25568 -13.07987 -12.79864 -12.77687 -12.52557 -12.51285 -12.27370 -11.93019 -11.91054 -11.82488 -11.65244 -11.32336 -10.90470 -10.68463 -10.54558 -10.12859 -9.11969 -8.17484 -6.31367 -0.69588 0.26359 0.47686 1.05129 1.25472 1.43444 1.47338 1.55052 1.63114 1.99757 2.44186 2.66085 2.67037 3.16104 3.26996 3.65398 3.76602 3.84455 3.96483 4.11831 4.14288 4.17096 4.21428 4.30905 4.40204 4.44454 4.52207 4.55110 4.75547 4.89544 4.92603 4.98358 5.02145 5.06911 5.17903 5.25503 5.27723 5.31945 5.50834 5.62995 5.78535 5.85919 6.17130 6.40790 6.87062 7.13743 7.15168 7.39164 8.94706 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.047384 B = 0.001894 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.769111 B =14777.665167 C =15206.812857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.025 4.025 3 C 0.173 3.827 4 N -0.322 5.322 5 N -0.317 5.317 6 C 0.219 3.781 7 C -0.067 4.067 8 C -0.048 4.048 9 C -0.135 4.135 10 C 0.175 3.825 11 N -0.661 5.661 12 C 0.513 3.487 13 O -0.559 6.559 14 C -0.116 4.116 15 C 0.039 3.961 16 C -0.543 4.543 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.972 3.028 21 H -0.262 1.262 22 H -0.291 1.291 23 H -0.262 1.262 24 C -0.147 4.147 25 C -0.049 4.049 26 O -0.219 6.219 27 H 0.104 0.896 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.434 0.566 35 H 0.114 0.886 36 H 0.113 0.887 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.262 0.738 40 H 0.119 0.881 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.821 -25.467 -4.905 32.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 C -0.038 4.038 4 N -0.168 5.168 5 N -0.163 5.163 6 C 0.011 3.989 7 C -0.070 4.070 8 C -0.068 4.068 9 C -0.155 4.155 10 C 0.078 3.922 11 N -0.308 5.308 12 C 0.303 3.697 13 O -0.436 6.436 14 C -0.156 4.156 15 C 0.001 3.999 16 C -0.581 4.581 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.796 3.204 21 H -0.187 1.187 22 H -0.216 1.216 23 H -0.186 1.186 24 C -0.167 4.167 25 C -0.070 4.070 26 O -0.099 6.099 27 H 0.123 0.877 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.183 0.817 33 H 0.195 0.805 34 H 0.275 0.725 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.071 0.929 40 H 0.137 0.863 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.113 -25.177 -2.825 31.736 hybrid contribution 0.527 0.910 -0.992 1.445 sum -18.587 -24.267 -3.816 30.805 Atomic orbital electron populations 1.21818 0.91673 1.04874 1.02303 1.20579 0.97713 0.80262 1.07816 1.29119 0.97146 0.98988 0.78553 1.74304 1.16625 0.98741 1.27124 1.74702 1.18488 1.13590 1.09560 1.25584 0.97447 0.85741 0.90166 1.17259 1.08515 0.88652 0.92553 1.21290 0.95448 0.99702 0.90366 1.21145 1.02655 0.89447 1.02255 1.18266 0.94890 0.88441 0.90556 1.43598 1.37345 1.25593 1.24244 1.21671 0.77807 0.84985 0.85203 1.90711 1.51575 1.74144 1.27162 1.21680 1.01541 0.92104 1.00271 1.18724 0.92552 0.94067 0.94560 1.21692 1.18785 1.07419 1.10205 0.90317 1.26125 0.96115 1.02144 0.96056 1.70173 1.24103 1.39388 1.24086 0.85393 0.77924 0.78388 0.78652 1.18712 1.21639 1.18636 1.21049 1.02508 0.99795 0.93377 1.20944 0.94708 0.90656 1.00646 1.84835 1.64400 1.22437 1.38199 0.87697 0.93050 0.92329 0.85648 0.85667 0.81729 0.80516 0.72495 0.86782 0.86931 0.99797 0.99763 0.92948 0.86276 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.90 71.99 0.71 -0.18 16 2 C -0.03 -0.20 6.56 29.85 0.20 0.00 16 3 C 0.17 3.31 7.73 88.33 0.68 4.00 16 4 N -0.32 -8.70 12.22 -165.31 -2.02 -10.72 16 5 N -0.32 -9.57 11.91 -166.31 -1.98 -11.55 16 6 C 0.22 5.60 7.98 87.29 0.70 6.29 16 7 C -0.07 -1.59 5.87 -20.08 -0.12 -1.71 16 8 C -0.05 -0.82 9.72 22.50 0.22 -0.60 16 9 C -0.14 -2.23 9.94 22.35 0.22 -2.00 16 10 C 0.18 4.25 6.28 38.26 0.24 4.49 16 11 N -0.66 -15.56 5.33 -303.41 -1.62 -17.17 16 12 C 0.51 17.98 7.56 87.66 0.66 18.64 16 13 O -0.56 -25.60 13.66 -3.03 -0.04 -25.64 16 14 C -0.12 -4.21 5.64 29.85 0.17 -4.04 16 15 C 0.04 2.06 4.26 29.85 0.13 2.18 16 16 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16 17 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 18 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 19 N -0.94 -58.80 13.29 21.45 0.28 -58.51 16 20 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 24 C -0.15 -4.36 8.63 22.35 0.19 -4.17 16 25 C -0.05 -1.36 9.69 22.50 0.22 -1.14 16 26 O -0.22 -4.56 10.67 -9.14 -0.10 -4.66 16 27 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.17 1.80 7.93 -2.91 -0.02 1.78 16 33 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 34 H 0.43 6.10 8.82 -92.70 -0.82 5.29 16 35 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 37 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 38 H -0.02 -0.97 8.10 -2.39 -0.02 -0.99 16 39 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.12 4.23 6.41 -2.91 -0.02 4.22 16 41 H 0.13 3.72 7.86 -2.91 -0.02 3.70 16 Total: -1.00 -83.42 360.58 1.72 -81.70 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.25 Total: 8.86 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.92 Total: -7.79 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -5.33 Total: -97.95 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.14 Total: -30.30 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -83.42 1.72 -81.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360326023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.631 kcal (2) G-P(sol) polarization free energy of solvation -83.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds