Wall clock time and date at job start Tue Mar 31 2020 11:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99785 * 2 1 3 5 5 H 1.08003 * 119.99963 * 239.99738 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47183 * 60.00274 * 8 6 4 10 10 H 1.48496 * 109.47425 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47216 * 300.00267 * 8 6 4 12 12 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 13 13 N 1.46500 * 109.46998 * 299.99786 * 12 2 1 14 14 C 1.39638 * 120.00032 * 180.02562 * 13 12 2 15 15 C 1.40023 * 119.72287 * 359.97438 * 14 13 12 16 16 C 1.35897 * 120.99400 * 179.97438 * 15 14 13 17 17 C 1.40651 * 120.00014 * 0.02562 * 16 15 14 18 18 N 1.33700 * 120.92998 * 180.02562 * 17 16 15 19 19 C 1.31067 * 121.36113 * 179.97438 * 18 17 16 20 20 C 1.39334 * 121.76448 * 359.97438 * 19 18 17 21 21 C 1.36575 * 119.91576 * 0.02562 * 20 19 18 22 22 C 1.40814 * 118.15584 * 359.97438 * 21 20 19 23 23 C 1.37777 * 119.72235 * 179.73007 * 14 13 12 24 24 N 1.48039 * 120.26803 * 359.97390 * 23 14 13 25 25 O 1.21795 * 120.00186 * 89.99795 * 24 23 14 26 26 O 1.21802 * 119.99546 * 270.00191 * 24 23 14 27 27 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 28 28 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 29 29 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 32 32 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 33 33 H 0.96992 * 120.00038 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.46955 * 60.00011 * 12 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 36 36 H 0.97010 * 119.99909 * 359.97438 * 13 12 2 37 37 H 1.08004 * 119.50279 * 0.02562 * 15 14 13 38 38 H 1.08001 * 120.00150 * 180.02562 * 16 15 14 39 39 H 1.07996 * 119.12148 * 179.97438 * 19 18 17 40 40 H 1.07999 * 120.04667 * 180.02562 * 20 19 18 41 41 H 1.07990 * 120.92128 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5200 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8895 -0.5074 3.7137 15 6 2.6948 -1.6464 3.8355 16 6 3.0397 -2.1323 5.0568 17 6 2.5861 -1.4899 6.2230 18 7 2.9145 -1.9517 7.4339 19 6 2.4971 -1.3594 8.5261 20 6 1.6931 -0.2223 8.4824 21 6 1.3202 0.3024 7.2778 22 6 1.7707 -0.3366 6.1067 23 6 1.4317 0.1498 4.8348 24 7 0.5856 1.3569 4.6987 25 8 -0.6263 1.2483 4.6447 26 8 1.1015 2.4587 4.6406 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9563 0.8900 33 1 0.7089 1.1612 -3.4844 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 0.9943 0.7583 2.3564 37 1 3.0479 -2.1458 2.9453 38 1 3.6620 -3.0118 5.1321 39 1 2.7838 -1.7636 9.4856 40 1 1.3652 0.2437 9.3998 41 1 0.6972 1.1829 7.2250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413401904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:43 Heat of formation + Delta-G solvation = 51.067112 kcal Electronic energy + Delta-G solvation = -26176.551916 eV Core-core repulsion = 22445.617767 eV Total energy + Delta-G solvation = -3730.934149 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.17778 -40.81355 -38.63928 -36.56649 -36.29411 -34.10955 -33.78635 -31.44898 -30.98387 -29.24015 -26.31976 -25.93685 -25.88733 -25.07968 -24.33784 -23.00924 -22.02991 -19.54066 -18.84441 -18.60159 -18.46529 -17.96194 -16.86853 -16.37452 -16.19325 -15.69852 -15.18800 -14.87982 -14.71340 -14.10613 -13.87433 -13.71172 -13.60402 -13.14540 -12.76705 -12.52852 -12.46447 -11.86355 -11.58686 -11.45706 -11.35172 -11.05907 -11.01467 -10.97383 -10.92063 -10.84940 -10.59150 -10.32880 -10.01008 -9.87170 -9.66757 -9.59433 -9.00553 -8.99565 -8.52855 -7.66976 -6.15857 -4.28828 -0.01887 0.58466 0.68226 1.52792 1.59951 2.55955 3.17955 3.19813 3.26054 3.29040 3.73212 3.98302 4.26721 4.30434 4.31961 4.56390 4.61520 4.72951 4.85495 5.10720 5.25625 5.32774 5.43217 5.51203 5.72884 5.77977 5.86580 5.87128 6.02520 6.18102 6.33466 6.44929 6.52803 6.67449 6.73394 6.82008 6.94774 7.19006 7.37990 7.40412 7.55180 7.59673 7.76069 7.83751 7.96241 8.19819 8.70608 9.38238 10.85590 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.003434 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.681085 B = 8151.246853 C = 9054.623367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.059 3.941 3 C -0.133 4.133 4 C -0.515 4.515 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.119 3.881 13 N -0.705 5.705 14 C 0.302 3.698 15 C -0.150 4.150 16 C -0.012 4.012 17 C 0.083 3.917 18 N -0.445 5.445 19 C 0.099 3.901 20 C -0.138 4.138 21 C -0.095 4.095 22 C -0.006 4.006 23 C -0.155 4.155 24 N 0.031 4.969 25 O -0.147 6.147 26 O -0.147 6.147 27 H 0.005 0.995 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.089 0.911 32 H 0.005 0.995 33 H 0.263 0.737 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.406 0.594 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.141 0.859 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 -3.842 17.707 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.059 3.941 3 C -0.191 4.191 4 C -0.553 4.553 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.519 5.519 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C -0.002 4.002 13 N -0.325 5.325 14 C 0.185 3.815 15 C -0.173 4.173 16 C -0.032 4.032 17 C -0.042 4.042 18 N -0.153 5.153 19 C -0.073 4.073 20 C -0.158 4.158 21 C -0.122 4.122 22 C -0.010 4.010 23 C -0.245 4.245 24 N 0.560 4.440 25 O -0.369 6.369 26 O -0.369 6.369 27 H 0.024 0.976 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.024 0.976 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.243 0.757 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.180 0.820 40 H 0.159 0.841 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.675 -5.211 17.262 18.402 hybrid contribution -0.765 1.078 -0.918 1.609 sum 2.910 -4.133 16.344 17.108 Atomic orbital electron populations 1.21860 0.97450 0.99362 1.00430 1.18345 0.93026 0.92864 0.89907 1.21860 0.98672 0.98146 1.00432 1.20840 1.32353 1.12414 0.89700 0.92366 1.24892 0.94646 0.94836 0.98988 1.69789 1.35978 1.22433 1.23714 0.86584 0.79205 0.79733 0.82060 1.20199 1.21182 1.20204 1.22159 0.98376 0.96219 0.83484 1.45895 1.52251 1.31428 1.02879 1.17618 0.89012 0.90602 0.84268 1.20670 1.00983 0.96052 0.99597 1.20887 0.95048 0.97939 0.89314 1.18514 0.99191 0.93823 0.92684 1.67969 1.20008 1.29735 0.97542 1.22847 0.94695 0.92754 0.96985 1.21867 0.98203 0.97197 0.98517 1.21288 0.99337 0.99714 0.91831 1.17868 0.96765 0.95552 0.90778 1.19695 1.14442 0.95954 0.94391 1.43348 1.01138 1.02296 0.97229 1.94550 0.96814 1.93513 1.52010 1.94552 1.76957 1.13380 1.51968 0.97639 0.89202 0.95205 0.95203 0.89202 0.97633 0.92641 0.91827 0.91826 0.75688 0.82579 0.82967 0.82050 0.84121 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 4 C -0.51 -12.61 8.01 -34.44 -0.28 -12.88 16 5 H 0.06 1.39 7.74 -52.48 -0.41 0.98 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -23.00 9.35 55.43 0.52 -22.48 16 8 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 C 0.12 2.16 3.72 -4.04 -0.02 2.15 16 13 N -0.71 -12.12 5.12 -58.64 -0.30 -12.42 16 14 C 0.30 4.67 6.64 -83.80 -0.56 4.11 16 15 C -0.15 -1.88 9.21 -39.75 -0.37 -2.25 16 16 C -0.01 -0.14 9.96 -39.51 -0.39 -0.53 16 17 C 0.08 1.09 6.61 -84.81 -0.56 0.53 16 18 N -0.45 -5.37 10.34 -10.95 -0.11 -5.48 16 19 C 0.10 0.94 11.14 -17.47 -0.19 0.75 16 20 C -0.14 -1.29 10.03 -39.77 -0.40 -1.69 16 21 C -0.09 -1.18 9.66 -39.21 -0.38 -1.55 16 22 C -0.01 -0.09 5.74 -106.81 -0.61 -0.70 16 23 C -0.15 -2.47 6.18 -79.32 -0.49 -2.96 16 24 N 0.03 0.54 2.60 34.27 0.09 0.62 16 25 O -0.15 -2.64 19.26 -29.46 -0.57 -3.21 16 26 O -0.15 -2.64 19.26 -29.46 -0.57 -3.20 16 27 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 28 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 32 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 35 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 36 H 0.41 7.57 5.37 -40.82 -0.22 7.35 16 37 H 0.16 1.70 6.66 -52.48 -0.35 1.35 16 38 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 1.60 7.57 -52.49 -0.40 1.20 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -27.49 343.31 -9.39 -36.88 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.79 Total: 6.89 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -3.81 Total: -17.56 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.19 Total: -39.76 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -1.13 Total: -6.41 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.49 -9.39 -36.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413401904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.943 kcal (2) G-P(sol) polarization free energy of solvation -27.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds