Wall clock time and date at job start Tue Mar 31 2020 11:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99785 * 2 1 3 5 5 H 1.08003 * 119.99963 * 239.99738 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47183 * 60.00274 * 8 6 4 10 10 H 1.48496 * 109.47425 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47216 * 300.00267 * 8 6 4 12 12 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 13 13 N 1.46500 * 109.46998 * 299.99786 * 12 2 1 14 14 C 1.39638 * 120.00032 * 180.02562 * 13 12 2 15 15 C 1.40023 * 119.72287 * 359.97438 * 14 13 12 16 16 C 1.35897 * 120.99400 * 179.97438 * 15 14 13 17 17 C 1.40651 * 120.00014 * 0.02562 * 16 15 14 18 18 N 1.33700 * 120.92998 * 180.02562 * 17 16 15 19 19 C 1.31067 * 121.36113 * 179.97438 * 18 17 16 20 20 C 1.39334 * 121.76448 * 359.97438 * 19 18 17 21 21 C 1.36575 * 119.91576 * 0.02562 * 20 19 18 22 22 C 1.40814 * 118.15584 * 359.97438 * 21 20 19 23 23 C 1.37777 * 119.72235 * 179.73007 * 14 13 12 24 24 N 1.48039 * 120.26803 * 359.97390 * 23 14 13 25 25 O 1.21795 * 120.00186 * 89.99795 * 24 23 14 26 26 O 1.21802 * 119.99546 * 270.00191 * 24 23 14 27 27 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 28 28 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 29 29 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 32 32 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 33 33 H 0.96992 * 120.00038 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.46955 * 60.00011 * 12 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 36 36 H 0.97010 * 119.99909 * 359.97438 * 13 12 2 37 37 H 1.08004 * 119.50279 * 0.02562 * 15 14 13 38 38 H 1.08001 * 120.00150 * 180.02562 * 16 15 14 39 39 H 1.07996 * 119.12148 * 179.97438 * 19 18 17 40 40 H 1.07999 * 120.04667 * 180.02562 * 20 19 18 41 41 H 1.07990 * 120.92128 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5200 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8895 -0.5074 3.7137 15 6 2.6948 -1.6464 3.8355 16 6 3.0397 -2.1323 5.0568 17 6 2.5861 -1.4899 6.2230 18 7 2.9145 -1.9517 7.4339 19 6 2.4971 -1.3594 8.5261 20 6 1.6931 -0.2223 8.4824 21 6 1.3202 0.3024 7.2778 22 6 1.7707 -0.3366 6.1067 23 6 1.4317 0.1498 4.8348 24 7 0.5856 1.3569 4.6987 25 8 -0.6263 1.2483 4.6447 26 8 1.1015 2.4587 4.6406 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9563 0.8900 33 1 0.7089 1.1612 -3.4844 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 0.9943 0.7583 2.3564 37 1 3.0479 -2.1458 2.9453 38 1 3.6620 -3.0118 5.1321 39 1 2.7838 -1.7636 9.4856 40 1 1.3652 0.2437 9.3998 41 1 0.6972 1.1829 7.2250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413401904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:42 Heat of formation + Delta-G solvation = 37.667669 kcal Electronic energy + Delta-G solvation = -26177.132960 eV Core-core repulsion = 22445.617767 eV Total energy + Delta-G solvation = -3731.515192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.44015 -41.81921 -39.84255 -37.96889 -37.66465 -35.40774 -34.82070 -33.12468 -31.95576 -30.41125 -27.72393 -27.67753 -27.48579 -26.60747 -25.28470 -24.09009 -23.16587 -20.99433 -20.14248 -19.95787 -19.61729 -19.15998 -18.01196 -17.69852 -17.40432 -17.07220 -16.38601 -16.24804 -15.98762 -15.32865 -15.06000 -14.90956 -14.62537 -14.37666 -14.13623 -13.88546 -13.76635 -13.19773 -13.17206 -12.88757 -12.85759 -12.68283 -12.63227 -12.38155 -12.36583 -12.34314 -12.17192 -11.85839 -11.63399 -11.31920 -10.95974 -10.81920 -10.75694 -10.43263 -9.91573 -8.84008 -8.05784 -6.23961 -0.96841 -0.70607 -0.34777 0.36356 0.56065 1.45127 1.46395 1.52463 1.63284 1.94060 2.44608 2.82619 3.13013 3.18968 3.33445 3.40011 3.58722 3.71790 3.79188 4.01656 4.14420 4.38025 4.41485 4.43077 4.54888 4.56800 4.69415 4.78960 4.86999 4.88892 4.96580 5.01851 5.04639 5.06482 5.21881 5.32434 5.52289 5.52342 5.61620 5.74514 5.97832 6.00507 6.16024 6.33426 6.35654 6.73171 6.82601 7.45557 8.93782 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.003434 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.681085 B = 8151.246853 C = 9054.623367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.525 4.525 5 H 0.064 0.936 6 C 0.023 3.977 7 N -0.906 5.906 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.292 1.292 11 H -0.272 1.272 12 C 0.135 3.865 13 N -0.719 5.719 14 C 0.290 3.710 15 C -0.157 4.157 16 C 0.005 3.995 17 C 0.072 3.928 18 N -0.458 5.458 19 C 0.109 3.891 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.029 4.029 23 C -0.171 4.171 24 N 0.036 4.964 25 O -0.164 6.164 26 O -0.164 6.164 27 H 0.012 0.988 28 H 0.061 0.939 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.395 0.605 37 H 0.174 0.826 38 H 0.185 0.815 39 H 0.206 0.794 40 H 0.181 0.819 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 -5.949 20.304 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.177 4.177 7 N -0.545 5.545 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.217 1.217 11 H -0.197 1.197 12 C 0.013 3.987 13 N -0.339 5.339 14 C 0.176 3.824 15 C -0.180 4.180 16 C -0.014 4.014 17 C -0.052 4.052 18 N -0.166 5.166 19 C -0.063 4.063 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.032 4.032 23 C -0.260 4.260 24 N 0.563 4.437 25 O -0.385 6.385 26 O -0.385 6.385 27 H 0.031 0.969 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.230 0.770 37 H 0.191 0.809 38 H 0.203 0.797 39 H 0.223 0.777 40 H 0.198 0.802 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.171 -7.331 19.888 21.818 hybrid contribution -1.219 1.721 -1.440 2.553 sum 3.952 -5.610 18.449 19.684 Atomic orbital electron populations 1.21700 0.98107 0.98879 0.99337 1.18335 0.92508 0.92675 0.91339 1.21701 0.98409 0.98582 0.99337 1.21225 1.31944 1.12518 0.90628 0.91769 1.25584 0.95032 0.95482 1.01563 1.69945 1.37108 1.23637 1.23763 0.85708 0.78759 0.78756 0.78957 1.19702 1.21750 1.19718 1.21820 0.98680 0.95945 0.82227 1.45684 1.53349 1.31538 1.03321 1.17907 0.89759 0.91556 0.83170 1.20848 1.00937 0.95339 1.00873 1.21246 0.93861 0.98051 0.88253 1.18796 0.99029 0.93496 0.93894 1.68078 1.20657 1.30211 0.97654 1.23666 0.92796 0.91899 0.97924 1.22336 0.96169 0.96374 0.98756 1.21429 1.00390 1.00163 0.92692 1.18123 0.97910 0.96627 0.90584 1.19979 1.14935 0.95442 0.95645 1.43628 1.01088 1.02722 0.96286 1.94524 0.97699 1.93681 1.52569 1.94526 1.76907 1.14485 1.52546 0.96902 0.92016 0.95250 0.95257 0.92015 0.96900 0.93126 0.90917 0.90923 0.77004 0.80881 0.79732 0.77725 0.80191 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.08 71.98 0.58 -5.04 16 2 C 0.05 2.31 0.50 -52.93 -0.03 2.28 16 3 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 4 C -0.52 -25.65 8.01 25.60 0.21 -25.44 16 5 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 6 C 0.02 1.17 5.15 84.65 0.44 1.61 16 7 N -0.91 -48.51 9.35 21.45 0.20 -48.31 16 8 Si 0.95 40.70 29.54 68.60 2.03 42.72 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 C 0.14 4.82 3.72 86.38 0.32 5.14 16 13 N -0.72 -24.79 5.12 -339.44 -1.74 -26.53 16 14 C 0.29 8.87 6.64 38.22 0.25 9.13 16 15 C -0.16 -3.67 9.21 22.16 0.20 -3.47 16 16 C 0.01 0.11 9.96 22.32 0.22 0.33 16 17 C 0.07 1.72 6.61 40.31 0.27 1.98 16 18 N -0.46 -9.42 10.34 -188.56 -1.95 -11.37 16 19 C 0.11 1.58 11.14 85.07 0.95 2.53 16 20 C -0.12 -1.76 10.03 22.14 0.22 -1.54 16 21 C -0.12 -2.81 9.66 22.51 0.22 -2.59 16 22 C -0.03 -0.79 5.74 -21.28 -0.12 -0.92 16 23 C -0.17 -5.48 6.18 36.77 0.23 -5.25 16 24 N 0.04 1.30 2.60 -45.50 -0.12 1.18 16 25 O -0.16 -6.12 19.26 18.89 0.36 -5.76 16 26 O -0.16 -6.12 19.26 18.88 0.36 -5.76 16 27 H 0.01 0.53 6.86 -2.39 -0.02 0.51 16 28 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 32 H 0.01 0.53 6.86 -2.39 -0.02 0.51 16 33 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 34 H 0.07 2.43 7.93 -2.39 -0.02 2.41 16 35 H 0.07 2.43 7.93 -2.39 -0.02 2.41 16 36 H 0.39 15.12 5.37 -92.70 -0.50 14.63 16 37 H 0.17 3.37 6.66 -2.91 -0.02 3.35 16 38 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.21 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.12 2.98 7.57 -2.92 -0.02 2.96 16 Total: -1.00 -61.40 343.31 4.27 -57.13 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.58 Total: 22.99 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 4.54 Total: -26.30 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -3.60 Total: -85.03 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.73 Total: -11.52 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -61.40 4.27 -57.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413401904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.800 kcal (2) G-P(sol) polarization free energy of solvation -61.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds