Wall clock time and date at job start Tue Mar 31 2020 11:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47003 * 2 1 4 4 C 1.50702 * 109.46729 * 240.00021 * 2 1 3 5 5 H 1.08002 * 119.99878 * 235.51712 * 4 2 1 6 6 C 1.37875 * 120.00449 * 55.52594 * 4 2 1 7 7 N 1.31513 * 120.00025 * 201.76057 * 6 4 2 8 8 Si 1.86805 * 119.99591 * 21.75695 * 6 4 2 9 9 H 1.48496 * 109.47079 * 84.58462 * 8 6 4 10 10 H 1.48507 * 109.46738 * 204.57961 * 8 6 4 11 11 H 1.48493 * 109.47510 * 324.57841 * 8 6 4 12 12 C 1.52997 * 109.46733 * 120.00099 * 2 1 3 13 13 N 1.46497 * 109.47425 * 299.99649 * 12 2 1 14 14 C 1.30890 * 119.99797 * 114.72593 * 13 12 2 15 15 N 1.37537 * 120.53614 * 352.87976 * 14 13 12 16 16 H 0.96994 * 119.12123 * 0.02562 * 15 14 13 17 17 C 1.36889 * 121.75749 * 179.75467 * 15 14 13 18 18 C 1.33983 * 122.47056 * 0.53642 * 17 15 14 19 19 C 1.46605 * 119.91363 * 359.74274 * 18 17 15 20 20 C 1.39516 * 121.73539 * 179.97438 * 19 18 17 21 21 C 1.37778 * 119.56589 * 180.02562 * 20 19 18 22 22 N 1.48023 * 119.64808 * 179.97438 * 21 20 19 23 23 O 1.21799 * 119.99987 * 0.02562 * 22 21 20 24 24 O 1.21800 * 119.99890 * 180.02562 * 22 21 20 25 25 C 1.38793 * 120.70231 * 359.97438 * 21 20 19 26 26 C 1.37879 * 120.66156 * 0.04009 * 25 21 20 27 27 C 1.39192 * 119.57751 * 359.96084 * 26 25 21 28 28 H 1.08994 * 109.47428 * 311.24064 * 1 2 3 29 29 H 1.09002 * 109.46969 * 71.23635 * 1 2 3 30 30 H 1.08995 * 109.47157 * 191.23293 * 1 2 3 31 31 H 1.08998 * 109.47169 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47639 * 300.00003 * 3 2 1 33 33 H 1.09004 * 109.47675 * 59.99898 * 3 2 1 34 34 H 0.97005 * 119.99818 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47349 * 60.00503 * 12 2 1 36 36 H 1.09007 * 109.46716 * 179.97438 * 12 2 1 37 37 H 1.07993 * 118.75766 * 180.25758 * 17 15 14 38 38 H 1.08003 * 120.04499 * 179.75782 * 18 17 15 39 39 H 1.08000 * 120.21273 * 0.03926 * 20 19 18 40 40 H 1.08002 * 119.67144 * 180.02562 * 25 21 20 41 41 H 1.08000 * 120.21811 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.7115 -1.5444 -1.1331 6 6 1.6249 -0.2956 -2.4807 7 7 1.6900 -1.1224 -3.5014 8 14 0.9804 1.4407 -2.7245 9 1 2.1215 2.3671 -2.9357 10 1 0.0884 1.4754 -3.9114 11 1 0.2188 1.8597 -1.5206 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 0.7163 -0.6327 3.2534 15 7 0.1766 -1.8526 2.9185 16 1 0.4234 -2.2623 2.0747 17 6 -0.6954 -2.5065 3.7468 18 6 -1.0857 -2.0004 4.9243 19 6 -0.5704 -0.7018 5.3688 20 6 -0.9516 -0.1391 6.5872 21 6 -0.4401 1.0844 6.9607 22 7 -0.8437 1.6834 8.2527 23 8 -1.6238 1.0946 8.9796 24 8 -0.3958 2.7650 8.5890 25 6 0.4497 1.7614 6.1382 26 6 0.8392 1.2232 4.9300 27 6 0.3344 -0.0118 4.5334 28 1 -0.3634 0.6774 0.7727 29 1 -0.3633 0.3306 -0.9731 30 1 -0.3633 -1.0079 0.2002 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.4029 -0.8306 -4.3809 35 1 1.6767 -1.7490 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 -1.0867 -3.4643 3.4373 38 1 -1.7788 -2.5484 5.5454 39 1 -1.6430 -0.6594 7.2335 40 1 0.8408 2.7194 6.4476 41 1 1.5323 1.7560 4.2959 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413406416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:38 Heat of formation + Delta-G solvation = 78.916822 kcal Electronic energy + Delta-G solvation = -25735.597874 eV Core-core repulsion = 22005.871380 eV Total energy + Delta-G solvation = -3729.726495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.31964 -40.74021 -38.37499 -36.75292 -36.67694 -34.40606 -32.49819 -32.14807 -31.35688 -29.10537 -27.55746 -26.33659 -25.65091 -24.89024 -23.95124 -23.11304 -21.42809 -20.02472 -19.12452 -18.84947 -18.57817 -17.66556 -17.42373 -16.67639 -16.20662 -15.54735 -15.39768 -15.08009 -14.65001 -14.28596 -13.92291 -13.42973 -13.32634 -13.16788 -12.87779 -12.86733 -12.42438 -12.26246 -11.90037 -11.76310 -11.60225 -11.44035 -11.30747 -11.27991 -11.18301 -10.53884 -10.35503 -10.29566 -10.12595 -10.05073 -9.43664 -9.26758 -9.10777 -8.72718 -8.41177 -7.43620 -6.28188 -4.20147 -0.45414 0.45981 1.01564 1.24132 1.92843 2.46665 2.92911 3.20988 3.31207 3.33937 3.55333 3.87787 4.10331 4.23562 4.30237 4.47414 4.63394 4.68478 5.00399 5.06369 5.10867 5.32524 5.46848 5.55749 5.59473 5.75614 5.82960 5.86484 6.01147 6.07756 6.10651 6.27035 6.29187 6.49418 6.51301 6.65166 6.75895 6.81270 6.84813 7.06487 7.21181 7.36711 7.49746 7.65929 8.08154 8.34356 8.78398 9.40910 10.84522 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022996 B = 0.003206 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.289515 B = 8732.115956 C = 9450.386667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.049 3.951 3 C -0.140 4.140 4 C -0.527 4.527 5 H 0.072 0.928 6 C 0.082 3.918 7 N -0.884 5.884 8 Si 0.875 3.125 9 H -0.283 1.283 10 H -0.304 1.304 11 H -0.248 1.248 12 C 0.070 3.930 13 N -0.535 5.535 14 C 0.377 3.623 15 N -0.658 5.658 16 H 0.421 0.579 17 C 0.155 3.845 18 C -0.246 4.246 19 C 0.004 3.996 20 C -0.065 4.065 21 C -0.024 4.024 22 N 0.029 4.971 23 O -0.164 6.164 24 O -0.161 6.161 25 C -0.085 4.085 26 C -0.053 4.053 27 C -0.012 4.012 28 H 0.025 0.975 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.029 0.971 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.364 -1.171 17.938 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.048 3.952 3 C -0.197 4.197 4 C -0.564 4.564 5 H 0.090 0.910 6 C -0.121 4.121 7 N -0.520 5.520 8 Si 0.706 3.294 9 H -0.210 1.210 10 H -0.232 1.232 11 H -0.174 1.174 12 C -0.058 4.058 13 N -0.256 5.256 14 C 0.103 3.897 15 N -0.283 5.283 16 H 0.262 0.738 17 C 0.030 3.970 18 C -0.274 4.274 19 C 0.001 3.999 20 C -0.085 4.085 21 C -0.108 4.108 22 N 0.548 4.452 23 O -0.379 6.379 24 O -0.377 6.377 25 C -0.104 4.104 26 C -0.073 4.073 27 C -0.015 4.015 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.103 0.897 37 H 0.175 0.825 38 H 0.163 0.837 39 H 0.175 0.825 40 H 0.173 0.827 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.628 -0.665 16.891 17.526 hybrid contribution -0.637 0.052 -0.623 0.893 sum -5.266 -0.613 16.268 17.110 Atomic orbital electron populations 1.22200 0.98264 0.98569 1.00137 1.18458 0.91832 0.92723 0.92227 1.22247 1.00429 0.97999 0.98991 1.20753 1.30173 1.16854 0.88623 0.90989 1.24910 0.94261 0.96968 0.95997 1.70032 1.46453 1.34253 1.01220 0.87467 0.79169 0.86346 0.76440 1.21003 1.23206 1.17394 1.22160 1.00064 0.94690 0.88935 1.72870 1.14170 1.30876 1.07705 1.20498 0.93374 0.82655 0.93141 1.42960 1.43055 1.19910 1.22403 0.73833 1.21459 0.88974 0.96308 0.90301 1.21004 1.10243 0.96880 0.99236 1.18740 0.94413 0.94700 0.92064 1.20804 0.98982 0.92596 0.96121 1.21136 1.05526 0.97463 0.86647 1.43688 0.98843 1.00323 1.02369 1.94526 1.29910 1.63037 1.50459 1.94537 1.57099 1.07923 1.78167 1.20952 0.95368 1.00965 0.93161 1.21133 0.98247 0.93568 0.94375 1.18739 0.96432 0.94753 0.91588 0.95615 0.92895 0.94812 0.93485 0.94441 0.94160 0.92531 0.95242 0.89712 0.82534 0.83685 0.82549 0.82748 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 7.51 37.16 0.28 -2.50 16 2 C 0.05 1.05 0.57 -155.66 -0.09 0.96 16 3 C -0.14 -2.96 7.58 37.15 0.28 -2.68 16 4 C -0.53 -13.65 8.60 -34.44 -0.30 -13.94 16 5 H 0.07 2.01 7.99 -52.49 -0.42 1.59 16 6 C 0.08 2.24 5.18 -17.82 -0.09 2.15 16 7 N -0.88 -25.68 13.96 55.43 0.77 -24.91 16 8 Si 0.87 21.04 23.06 -169.99 -3.92 17.12 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 11 H -0.25 -5.62 4.68 56.52 0.26 -5.36 16 12 C 0.07 1.28 5.06 -4.05 -0.02 1.26 16 13 N -0.53 -8.61 8.59 -58.66 -0.50 -9.11 16 14 C 0.38 5.17 7.65 -154.36 -1.18 3.99 16 15 N -0.66 -7.62 5.23 -10.78 -0.06 -7.67 16 16 H 0.42 5.01 6.20 -40.82 -0.25 4.75 16 17 C 0.16 1.31 11.07 -16.79 -0.19 1.12 16 18 C -0.25 -2.08 9.98 -37.70 -0.38 -2.46 16 19 C 0.00 0.04 5.89 -104.93 -0.62 -0.57 16 20 C -0.07 -0.65 9.35 -39.27 -0.37 -1.02 16 21 C -0.02 -0.27 6.85 -79.91 -0.55 -0.82 16 22 N 0.03 0.37 4.45 33.98 0.15 0.52 16 23 O -0.16 -2.16 18.42 -29.46 -0.54 -2.70 16 24 O -0.16 -2.16 18.41 -29.46 -0.54 -2.71 16 25 C -0.09 -0.88 9.52 -39.51 -0.38 -1.26 16 26 C -0.05 -0.59 9.64 -39.36 -0.38 -0.97 16 27 C -0.01 -0.15 5.90 -104.75 -0.62 -0.77 16 28 H 0.02 0.50 7.92 -51.93 -0.41 0.09 16 29 H 0.05 1.18 4.32 -51.93 -0.22 0.96 16 30 H 0.03 0.64 8.06 -51.93 -0.42 0.23 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.83 2.46 -51.93 -0.13 0.71 16 33 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.03 0.50 5.55 -51.93 -0.29 0.21 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.16 1.28 7.59 -52.49 -0.40 0.88 16 40 H 0.15 1.37 7.57 -52.49 -0.40 0.97 16 41 H 0.16 1.77 7.71 -52.49 -0.40 1.37 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -30.30 335.05 -8.88 -39.18 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.70 Total: 2.73 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -4.59 Total: -17.50 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.36 Total: -41.17 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -1.08 Total: -5.41 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -3.92 Total: 17.12 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.30 -8.88 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413406416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.093 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds