Wall clock time and date at job start Tue Mar 31 2020 11:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47003 * 2 1 4 4 C 1.50702 * 109.46729 * 240.00021 * 2 1 3 5 5 H 1.08002 * 119.99878 * 235.51712 * 4 2 1 6 6 C 1.37875 * 120.00449 * 55.52594 * 4 2 1 7 7 N 1.31513 * 120.00025 * 201.76057 * 6 4 2 8 8 Si 1.86805 * 119.99591 * 21.75695 * 6 4 2 9 9 H 1.48496 * 109.47079 * 84.58462 * 8 6 4 10 10 H 1.48507 * 109.46738 * 204.57961 * 8 6 4 11 11 H 1.48493 * 109.47510 * 324.57841 * 8 6 4 12 12 C 1.52997 * 109.46733 * 120.00099 * 2 1 3 13 13 N 1.46497 * 109.47425 * 299.99649 * 12 2 1 14 14 C 1.30890 * 119.99797 * 114.72593 * 13 12 2 15 15 N 1.37537 * 120.53614 * 352.87976 * 14 13 12 16 16 H 0.96994 * 119.12123 * 0.02562 * 15 14 13 17 17 C 1.36889 * 121.75749 * 179.75467 * 15 14 13 18 18 C 1.33983 * 122.47056 * 0.53642 * 17 15 14 19 19 C 1.46605 * 119.91363 * 359.74274 * 18 17 15 20 20 C 1.39516 * 121.73539 * 179.97438 * 19 18 17 21 21 C 1.37778 * 119.56589 * 180.02562 * 20 19 18 22 22 N 1.48023 * 119.64808 * 179.97438 * 21 20 19 23 23 O 1.21799 * 119.99987 * 0.02562 * 22 21 20 24 24 O 1.21800 * 119.99890 * 180.02562 * 22 21 20 25 25 C 1.38793 * 120.70231 * 359.97438 * 21 20 19 26 26 C 1.37879 * 120.66156 * 0.04009 * 25 21 20 27 27 C 1.39192 * 119.57751 * 359.96084 * 26 25 21 28 28 H 1.08994 * 109.47428 * 311.24064 * 1 2 3 29 29 H 1.09002 * 109.46969 * 71.23635 * 1 2 3 30 30 H 1.08995 * 109.47157 * 191.23293 * 1 2 3 31 31 H 1.08998 * 109.47169 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47639 * 300.00003 * 3 2 1 33 33 H 1.09004 * 109.47675 * 59.99898 * 3 2 1 34 34 H 0.97005 * 119.99818 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47349 * 60.00503 * 12 2 1 36 36 H 1.09007 * 109.46716 * 179.97438 * 12 2 1 37 37 H 1.07993 * 118.75766 * 180.25758 * 17 15 14 38 38 H 1.08003 * 120.04499 * 179.75782 * 18 17 15 39 39 H 1.08000 * 120.21273 * 0.03926 * 20 19 18 40 40 H 1.08002 * 119.67144 * 180.02562 * 25 21 20 41 41 H 1.08000 * 120.21811 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.7115 -1.5444 -1.1331 6 6 1.6249 -0.2956 -2.4807 7 7 1.6900 -1.1224 -3.5014 8 14 0.9804 1.4407 -2.7245 9 1 2.1215 2.3671 -2.9357 10 1 0.0884 1.4754 -3.9114 11 1 0.2188 1.8597 -1.5206 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 0.7163 -0.6327 3.2534 15 7 0.1766 -1.8526 2.9185 16 1 0.4234 -2.2623 2.0747 17 6 -0.6954 -2.5065 3.7468 18 6 -1.0857 -2.0004 4.9243 19 6 -0.5704 -0.7018 5.3688 20 6 -0.9516 -0.1391 6.5872 21 6 -0.4401 1.0844 6.9607 22 7 -0.8437 1.6834 8.2527 23 8 -1.6238 1.0946 8.9796 24 8 -0.3958 2.7650 8.5890 25 6 0.4497 1.7614 6.1382 26 6 0.8392 1.2232 4.9300 27 6 0.3344 -0.0118 4.5334 28 1 -0.3634 0.6774 0.7727 29 1 -0.3633 0.3306 -0.9731 30 1 -0.3633 -1.0079 0.2002 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.4029 -0.8306 -4.3809 35 1 1.6767 -1.7490 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 -1.0867 -3.4643 3.4373 38 1 -1.7788 -2.5484 5.5454 39 1 -1.6430 -0.6594 7.2335 40 1 0.8408 2.7194 6.4476 41 1 1.5323 1.7560 4.2959 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413406416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:36 Heat of formation + Delta-G solvation = 61.876829 kcal Electronic energy + Delta-G solvation = -25736.336784 eV Core-core repulsion = 22005.871380 eV Total energy + Delta-G solvation = -3730.465404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.27378 -41.63829 -39.41369 -38.09201 -37.68959 -35.58499 -33.88795 -33.35933 -32.51459 -30.01276 -28.59461 -28.00393 -27.14575 -26.58205 -24.76275 -24.08523 -22.41304 -21.11858 -20.44810 -19.75726 -19.59000 -18.62256 -18.45504 -18.05021 -17.51338 -17.29512 -16.25349 -16.15432 -15.71604 -15.22928 -15.07548 -14.93677 -14.76347 -14.42275 -14.11099 -13.88973 -13.82209 -13.68849 -13.31176 -12.86682 -12.74679 -12.68812 -12.46011 -12.34858 -12.29249 -12.24534 -12.12501 -11.78236 -11.59142 -11.16948 -10.93017 -10.67006 -10.52788 -10.30605 -10.06861 -8.39142 -8.34701 -6.31428 -1.39336 -0.32419 0.05218 0.32357 1.11073 1.29523 1.35280 1.42177 1.58242 2.03357 2.29558 2.69120 2.88042 2.99176 3.32516 3.46253 3.66925 3.79158 4.02741 4.05934 4.22062 4.25023 4.36466 4.47473 4.52872 4.69912 4.71144 4.73995 4.81198 4.89453 4.95080 4.98600 5.01332 5.10407 5.17982 5.20644 5.30529 5.42260 5.49105 5.67431 5.74136 5.91195 6.23321 6.32226 6.48609 6.70922 6.99525 7.32167 8.77928 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022996 B = 0.003206 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.289515 B = 8732.115956 C = 9450.386667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.044 3.956 3 C -0.136 4.136 4 C -0.521 4.521 5 H 0.039 0.961 6 C 0.032 3.968 7 N -0.932 5.932 8 Si 0.925 3.075 9 H -0.285 1.285 10 H -0.310 1.310 11 H -0.223 1.223 12 C 0.084 3.916 13 N -0.570 5.570 14 C 0.389 3.611 15 N -0.661 5.661 16 H 0.418 0.582 17 C 0.145 3.855 18 C -0.237 4.237 19 C 0.003 3.997 20 C -0.055 4.055 21 C -0.031 4.031 22 N 0.029 4.971 23 O -0.165 6.165 24 O -0.182 6.182 25 C -0.084 4.084 26 C -0.052 4.052 27 C -0.035 4.035 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.264 0.736 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.197 0.803 38 H 0.180 0.820 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 -1.346 20.281 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.043 3.957 3 C -0.193 4.193 4 C -0.559 4.559 5 H 0.057 0.943 6 C -0.167 4.167 7 N -0.570 5.570 8 Si 0.755 3.245 9 H -0.212 1.212 10 H -0.239 1.239 11 H -0.147 1.147 12 C -0.046 4.046 13 N -0.293 5.293 14 C 0.116 3.884 15 N -0.285 5.285 16 H 0.258 0.742 17 C 0.022 3.978 18 C -0.263 4.263 19 C 0.000 4.000 20 C -0.074 4.074 21 C -0.115 4.115 22 N 0.546 4.454 23 O -0.382 6.382 24 O -0.394 6.394 25 C -0.103 4.103 26 C -0.072 4.072 27 C -0.038 4.038 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.214 0.786 38 H 0.197 0.803 39 H 0.197 0.803 40 H 0.184 0.816 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.529 -0.825 19.296 20.388 hybrid contribution -0.100 -0.046 -1.167 1.172 sum -6.630 -0.871 18.129 19.323 Atomic orbital electron populations 1.22048 0.97296 0.99507 0.99421 1.18435 0.92489 0.92897 0.91922 1.22175 1.00278 0.97643 0.99191 1.21075 1.28535 1.15735 0.90513 0.94316 1.25598 0.95138 1.00026 0.95904 1.70144 1.49032 1.36087 1.01773 0.86635 0.78753 0.82222 0.76870 1.21178 1.23943 1.14735 1.21756 0.99179 0.94761 0.88879 1.72851 1.17261 1.31405 1.07822 1.20803 0.91697 0.82997 0.92909 1.43080 1.43239 1.19395 1.22790 0.74152 1.22116 0.88191 0.97550 0.89987 1.21466 1.09756 0.95768 0.99315 1.18984 0.93821 0.95452 0.91792 1.21051 0.98472 0.91922 0.95960 1.21300 1.06070 0.98082 0.86013 1.43891 0.98597 1.00195 1.02752 1.94510 1.29890 1.62883 1.50887 1.94540 1.57668 1.08476 1.78691 1.21043 0.95126 1.01412 0.92742 1.21143 0.98127 0.93449 0.94499 1.18859 0.97927 0.95560 0.91491 0.94226 0.94705 0.93846 0.93837 0.95542 0.92294 0.92652 0.94718 0.91370 0.78637 0.80278 0.80335 0.81598 0.82047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 7.51 71.98 0.54 -4.46 16 2 C 0.04 1.86 0.57 -52.93 -0.03 1.83 16 3 C -0.14 -5.62 7.58 71.98 0.55 -5.07 16 4 C -0.52 -27.54 8.60 25.60 0.22 -27.32 16 5 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 6 C 0.03 1.80 5.18 84.65 0.44 2.24 16 7 N -0.93 -55.77 13.96 21.45 0.30 -55.47 16 8 Si 0.93 43.64 23.06 68.60 1.58 45.22 16 9 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 10 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 11 H -0.22 -9.57 4.68 99.48 0.47 -9.10 16 12 C 0.08 3.03 5.06 86.38 0.44 3.47 16 13 N -0.57 -17.69 8.59 -339.49 -2.92 -20.60 16 14 C 0.39 9.93 7.65 136.17 1.04 10.97 16 15 N -0.66 -13.62 5.23 -188.01 -0.98 -14.61 16 16 H 0.42 9.16 6.20 -92.71 -0.57 8.59 16 17 C 0.14 1.87 11.07 82.93 0.92 2.78 16 18 C -0.24 -2.91 9.98 23.49 0.23 -2.68 16 19 C 0.00 0.05 5.89 -20.07 -0.12 -0.07 16 20 C -0.05 -0.90 9.35 22.47 0.21 -0.69 16 21 C -0.03 -0.63 6.85 36.40 0.25 -0.38 16 22 N 0.03 0.69 4.45 -46.40 -0.21 0.48 16 23 O -0.16 -3.97 18.42 18.89 0.35 -3.63 16 24 O -0.18 -4.66 18.41 18.89 0.35 -4.31 16 25 C -0.08 -1.59 9.52 22.32 0.21 -1.38 16 26 C -0.05 -1.07 9.64 22.41 0.22 -0.85 16 27 C -0.04 -0.78 5.90 -19.95 -0.12 -0.90 16 28 H 0.04 1.45 7.92 -2.39 -0.02 1.43 16 29 H 0.03 1.49 4.32 -2.39 -0.01 1.48 16 30 H 0.04 1.60 8.06 -2.39 -0.02 1.58 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.03 1.13 2.46 -2.39 -0.01 1.13 16 33 H 0.06 2.20 7.60 -2.38 -0.02 2.18 16 34 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 35 H 0.03 1.17 5.55 -2.39 -0.01 1.15 16 36 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 37 H 0.20 0.94 8.06 -2.91 -0.02 0.91 16 38 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 39 H 0.18 2.14 7.59 -2.91 -0.02 2.12 16 40 H 0.17 2.69 7.57 -2.91 -0.02 2.66 16 41 H 0.16 3.35 7.71 -2.91 -0.02 3.33 16 Total: -1.00 -66.74 335.05 3.74 -62.99 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.27 Total: 12.42 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 5.00 Total: -22.50 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -3.81 Total: -90.21 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.70 Total: -7.93 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.58 Total: 45.22 kcal Total: -66.74 3.74 -62.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413406416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.871 kcal (2) G-P(sol) polarization free energy of solvation -66.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds