Wall clock time and date at job start Tue Mar 31 2020 11:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46933 * 2 1 4 4 H 1.08999 * 109.46827 * 305.20974 * 3 2 1 5 5 C 1.50696 * 109.47050 * 185.20983 * 3 2 1 6 6 H 1.07992 * 120.00272 * 245.47504 * 5 3 2 7 7 C 1.37886 * 120.00051 * 65.47245 * 5 3 2 8 8 N 1.31506 * 120.00111 * 195.68052 * 7 5 3 9 9 Si 1.86801 * 119.99607 * 15.67913 * 7 5 3 10 10 H 1.48500 * 109.46972 * 95.34471 * 9 7 5 11 11 H 1.48501 * 109.46732 * 215.33853 * 9 7 5 12 12 H 1.48495 * 109.47340 * 335.34004 * 9 7 5 13 13 N 1.46502 * 109.46913 * 65.20921 * 3 2 1 14 14 S 1.65603 * 120.00025 * 244.07306 * 13 3 2 15 15 O 1.42090 * 106.40004 * 181.99267 * 14 13 3 16 16 O 1.42101 * 106.40164 * 49.07033 * 14 13 3 17 17 C 1.76202 * 107.21804 * 295.53395 * 14 13 3 18 18 C 1.34666 * 125.99347 * 154.99266 * 17 14 13 19 19 N 1.36879 * 106.81946 * 179.75910 * 18 17 14 20 20 C 1.46504 * 126.39726 * 180.25178 * 19 18 17 21 21 C 1.35042 * 107.20380 * 0.41650 * 19 18 17 22 22 C 1.50706 * 125.64540 * 179.84517 * 21 19 18 23 23 C 1.53003 * 109.47138 * 124.60357 * 22 21 19 24 24 C 1.53005 * 109.46770 * 244.59544 * 22 21 19 25 25 N 1.30497 * 108.70324 * 359.57568 * 21 19 18 26 26 H 1.08994 * 109.47463 * 296.69202 * 1 2 3 27 27 H 1.09000 * 109.46814 * 56.69525 * 1 2 3 28 28 H 1.08997 * 109.46742 * 176.68753 * 1 2 3 29 29 H 1.09000 * 109.46759 * 239.99910 * 2 1 3 30 30 H 1.09000 * 109.46709 * 120.00151 * 2 1 3 31 31 H 0.97002 * 119.99854 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00004 * 64.07903 * 13 3 2 33 33 H 1.08002 * 126.58876 * 0.04451 * 18 17 14 34 34 H 1.08999 * 109.47039 * 270.19229 * 20 19 18 35 35 H 1.08995 * 109.46838 * 30.19144 * 20 19 18 36 36 H 1.08995 * 109.46660 * 150.19139 * 20 19 18 37 37 H 1.08999 * 109.47407 * 4.60080 * 22 21 19 38 38 H 1.08995 * 109.47112 * 179.97438 * 23 22 21 39 39 H 1.08999 * 109.47198 * 59.99595 * 23 22 21 40 40 H 1.08996 * 109.46828 * 299.99304 * 23 22 21 41 41 H 1.08999 * 109.47363 * 295.06949 * 24 22 21 42 42 H 1.09006 * 109.46436 * 55.06400 * 24 22 21 43 43 H 1.08998 * 109.46946 * 175.05905 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6025 1.9825 -0.8397 5 6 3.5415 1.4445 -0.1290 6 1 4.1528 1.8075 0.6838 7 6 4.1347 0.9828 -1.2849 8 7 5.4173 0.6925 -1.2951 9 14 3.1165 0.7697 -2.8364 10 1 3.2462 1.9821 -3.6840 11 1 3.6029 -0.4146 -3.5888 12 1 1.6911 0.5721 -2.4698 13 7 1.6567 2.0959 1.2540 14 16 0.6158 3.3837 1.2321 15 8 0.4832 3.8153 2.5794 16 8 -0.4893 2.9928 0.4288 17 6 1.4213 4.6909 0.3679 18 6 0.8142 5.7034 -0.2802 19 7 1.8051 6.4900 -0.8025 20 6 1.6211 7.7138 -1.5867 21 6 2.9840 5.9255 -0.4631 22 6 4.3477 6.4519 -0.8297 23 6 5.1779 6.6460 0.4408 24 6 5.0500 5.4515 -1.7499 25 7 2.7468 4.8518 0.2397 26 1 -0.3634 0.4616 0.9181 27 1 -0.3633 0.5643 -0.8589 28 1 -0.3633 -1.0259 -0.0594 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8347 0.3681 -2.1084 32 1 2.0127 1.7743 2.0970 33 1 -0.2500 5.8661 -0.3668 34 1 1.5578 7.4610 -2.6451 35 1 0.7014 8.2095 -1.2759 36 1 2.4670 8.3812 -1.4224 37 1 4.2423 7.4070 -1.3442 38 1 6.1643 7.0262 0.1756 39 1 5.2833 5.6909 0.9554 40 1 4.6776 7.3586 1.0964 41 1 5.2340 4.5248 -1.2062 42 1 4.4175 5.2464 -2.6137 43 1 5.9987 5.8705 -2.0855 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416456915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:34 Heat of formation + Delta-G solvation = -24.620358 kcal Electronic energy + Delta-G solvation = -26197.675674 eV Core-core repulsion = 22598.903421 eV Total energy + Delta-G solvation = -3598.772253 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05965 -36.67468 -35.93156 -35.30878 -35.21506 -34.06980 -32.09720 -30.79228 -29.02938 -27.20645 -27.02461 -26.93130 -23.10326 -22.55489 -21.75768 -20.27274 -19.25634 -18.87149 -17.80902 -17.01578 -16.11730 -15.87515 -15.61532 -15.46264 -14.77850 -14.54398 -14.19298 -13.77108 -13.58855 -13.34801 -13.28489 -13.04155 -12.69272 -12.62152 -12.13054 -11.86588 -11.81314 -11.60248 -11.47522 -11.45433 -11.33829 -11.10890 -11.03003 -10.79755 -10.78288 -10.71180 -10.54557 -9.85478 -9.77282 -9.65409 -9.53534 -9.40285 -8.50281 -8.43156 -8.22511 -6.06439 -3.98235 1.15283 1.85011 2.69922 3.01391 3.27771 3.37824 3.44155 3.61420 4.25503 4.44335 4.47441 4.52623 4.69533 4.84385 4.98368 5.13022 5.22946 5.25560 5.29121 5.40844 5.51615 5.83079 5.91894 6.03950 6.07980 6.11089 6.12546 6.16436 6.21343 6.39724 6.44852 6.54769 6.72257 6.75900 6.82412 6.98698 7.15381 7.25080 7.42282 7.63503 8.05440 8.10469 8.56629 9.07778 9.59016 11.06416 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.007700 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.019827 B = 3635.565856 C = 5089.455201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.260 3.740 4 H 0.035 0.965 5 C -0.510 4.510 6 H 0.085 0.915 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.843 3.157 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.250 1.250 13 N -1.080 6.080 14 S 2.724 3.276 15 O -0.979 6.979 16 O -0.965 6.965 17 C -0.541 4.541 18 C 0.044 3.956 19 N -0.456 5.456 20 C 0.067 3.933 21 C 0.208 3.792 22 C -0.002 4.002 23 C -0.141 4.141 24 C -0.144 4.144 25 N -0.376 5.376 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.261 0.739 32 H 0.413 0.587 33 H 0.185 0.815 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 13.456 -1.219 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.154 3.846 4 H 0.053 0.947 5 C -0.549 4.549 6 H 0.103 0.897 7 C -0.120 4.120 8 N -0.526 5.526 9 Si 0.670 3.330 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.174 1.174 13 N -0.841 5.841 14 S 2.809 3.191 15 O -0.969 6.969 16 O -0.955 6.955 17 C -0.752 4.752 18 C -0.096 4.096 19 N -0.137 5.137 20 C -0.076 4.076 21 C -0.057 4.057 22 C -0.023 4.023 23 C -0.199 4.199 24 C -0.202 4.202 25 N -0.091 5.091 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.247 0.753 33 H 0.202 0.798 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.681 13.120 -0.912 14.326 hybrid contribution -0.406 0.772 -1.640 1.857 sum -6.087 13.891 -2.552 15.380 Atomic orbital electron populations 1.21863 0.97593 0.99692 1.01758 1.22221 0.93586 0.99501 1.01719 1.18807 0.96433 0.89113 0.80250 0.94703 1.21155 0.88840 1.41913 1.03001 0.89652 1.24756 0.94582 0.94538 0.98172 1.69960 1.11052 1.43841 1.27759 0.87467 0.82770 0.77833 0.84945 1.20931 1.21180 1.17376 1.54939 1.66767 1.46193 1.16192 1.00937 0.73157 0.72466 0.72565 1.93538 1.86442 1.82395 1.34515 1.93582 1.49009 1.81376 1.71506 1.33552 1.00415 1.19760 1.21487 1.22378 0.94986 0.92830 0.99385 1.45568 1.06877 1.21013 1.40246 1.22125 1.04325 0.84904 0.96239 1.23698 0.88396 0.93108 1.00502 1.19563 0.86722 0.98111 0.97855 1.21793 0.98609 1.03411 0.96046 1.21835 0.99140 1.00298 0.98966 1.70443 1.11589 1.13013 1.14103 0.93332 0.92935 0.94330 0.92048 0.92039 0.92861 0.75298 0.79752 0.90161 0.89341 0.89168 0.90686 0.91952 0.90408 0.93110 0.89515 0.93056 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.09 37.16 0.34 -2.61 16 2 C -0.13 -2.81 4.91 -26.73 -0.13 -2.94 16 3 C 0.26 6.01 1.79 -69.08 -0.12 5.89 16 4 H 0.04 0.85 6.27 -51.93 -0.33 0.53 16 5 C -0.51 -13.51 9.26 -34.44 -0.32 -13.83 16 6 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 7 C 0.08 2.25 5.33 -17.82 -0.09 2.16 16 8 N -0.89 -25.84 13.96 55.43 0.77 -25.06 16 9 Si 0.84 20.71 25.79 -169.99 -4.38 16.32 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.25 -5.86 5.57 56.52 0.31 -5.55 16 13 N -1.08 -22.18 4.89 -5.88 -0.03 -22.21 16 14 S 2.72 53.74 5.71 -107.50 -0.61 53.13 16 15 O -0.98 -20.57 18.02 -57.17 -1.03 -21.60 16 16 O -0.97 -19.81 16.50 -57.17 -0.94 -20.76 16 17 C -0.54 -10.41 7.03 -17.81 -0.13 -10.53 16 18 C 0.04 0.69 11.48 -16.56 -0.19 0.50 16 19 N -0.46 -6.37 3.15 -121.28 -0.38 -6.76 16 20 C 0.07 0.54 10.86 59.85 0.65 1.19 16 21 C 0.21 3.47 6.43 -155.42 -1.00 2.47 16 22 C 0.00 -0.03 3.25 -91.76 -0.30 -0.33 16 23 C -0.14 -1.81 9.15 37.16 0.34 -1.47 16 24 C -0.14 -2.21 9.18 37.16 0.34 -1.87 16 25 N -0.38 -7.58 11.21 -10.02 -0.11 -7.69 16 26 H 0.05 0.90 7.39 -51.93 -0.38 0.52 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.38 5.18 -51.93 -0.27 1.11 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.41 7.73 8.96 -34.47 -0.31 7.42 16 33 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.56 6.98 -51.93 -0.36 0.20 16 37 H 0.07 0.76 6.69 -51.93 -0.35 0.41 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -34.71 362.22 -8.59 -43.30 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.72 Total: 7.24 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -0.61 Total: -21.38 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.25 Total: -61.72 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.97 Total: -42.35 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.38 Total: 16.32 kcal Atomic # 16 Polarization: 53.74 SS G_CDS: -0.61 Total: 53.13 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.71 -8.59 -43.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416456915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.679 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds