Wall clock time and date at job start Tue Mar 31 2020 11:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46933 * 2 1 4 4 H 1.08999 * 109.46827 * 305.20974 * 3 2 1 5 5 C 1.50696 * 109.47050 * 185.20983 * 3 2 1 6 6 H 1.07992 * 120.00272 * 245.47504 * 5 3 2 7 7 C 1.37886 * 120.00051 * 65.47245 * 5 3 2 8 8 N 1.31506 * 120.00111 * 195.68052 * 7 5 3 9 9 Si 1.86801 * 119.99607 * 15.67913 * 7 5 3 10 10 H 1.48500 * 109.46972 * 95.34471 * 9 7 5 11 11 H 1.48501 * 109.46732 * 215.33853 * 9 7 5 12 12 H 1.48495 * 109.47340 * 335.34004 * 9 7 5 13 13 N 1.46502 * 109.46913 * 65.20921 * 3 2 1 14 14 S 1.65603 * 120.00025 * 244.07306 * 13 3 2 15 15 O 1.42090 * 106.40004 * 181.99267 * 14 13 3 16 16 O 1.42101 * 106.40164 * 49.07033 * 14 13 3 17 17 C 1.76202 * 107.21804 * 295.53395 * 14 13 3 18 18 C 1.34666 * 125.99347 * 154.99266 * 17 14 13 19 19 N 1.36879 * 106.81946 * 179.75910 * 18 17 14 20 20 C 1.46504 * 126.39726 * 180.25178 * 19 18 17 21 21 C 1.35042 * 107.20380 * 0.41650 * 19 18 17 22 22 C 1.50706 * 125.64540 * 179.84517 * 21 19 18 23 23 C 1.53003 * 109.47138 * 124.60357 * 22 21 19 24 24 C 1.53005 * 109.46770 * 244.59544 * 22 21 19 25 25 N 1.30497 * 108.70324 * 359.57568 * 21 19 18 26 26 H 1.08994 * 109.47463 * 296.69202 * 1 2 3 27 27 H 1.09000 * 109.46814 * 56.69525 * 1 2 3 28 28 H 1.08997 * 109.46742 * 176.68753 * 1 2 3 29 29 H 1.09000 * 109.46759 * 239.99910 * 2 1 3 30 30 H 1.09000 * 109.46709 * 120.00151 * 2 1 3 31 31 H 0.97002 * 119.99854 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00004 * 64.07903 * 13 3 2 33 33 H 1.08002 * 126.58876 * 0.04451 * 18 17 14 34 34 H 1.08999 * 109.47039 * 270.19229 * 20 19 18 35 35 H 1.08995 * 109.46838 * 30.19144 * 20 19 18 36 36 H 1.08995 * 109.46660 * 150.19139 * 20 19 18 37 37 H 1.08999 * 109.47407 * 4.60080 * 22 21 19 38 38 H 1.08995 * 109.47112 * 179.97438 * 23 22 21 39 39 H 1.08999 * 109.47198 * 59.99595 * 23 22 21 40 40 H 1.08996 * 109.46828 * 299.99304 * 23 22 21 41 41 H 1.08999 * 109.47363 * 295.06949 * 24 22 21 42 42 H 1.09006 * 109.46436 * 55.06400 * 24 22 21 43 43 H 1.08998 * 109.46946 * 175.05905 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6025 1.9825 -0.8397 5 6 3.5415 1.4445 -0.1290 6 1 4.1528 1.8075 0.6838 7 6 4.1347 0.9828 -1.2849 8 7 5.4173 0.6925 -1.2951 9 14 3.1165 0.7697 -2.8364 10 1 3.2462 1.9821 -3.6840 11 1 3.6029 -0.4146 -3.5888 12 1 1.6911 0.5721 -2.4698 13 7 1.6567 2.0959 1.2540 14 16 0.6158 3.3837 1.2321 15 8 0.4832 3.8153 2.5794 16 8 -0.4893 2.9928 0.4288 17 6 1.4213 4.6909 0.3679 18 6 0.8142 5.7034 -0.2802 19 7 1.8051 6.4900 -0.8025 20 6 1.6211 7.7138 -1.5867 21 6 2.9840 5.9255 -0.4631 22 6 4.3477 6.4519 -0.8297 23 6 5.1779 6.6460 0.4408 24 6 5.0500 5.4515 -1.7499 25 7 2.7468 4.8518 0.2397 26 1 -0.3634 0.4616 0.9181 27 1 -0.3633 0.5643 -0.8589 28 1 -0.3633 -1.0259 -0.0594 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8347 0.3681 -2.1084 32 1 2.0127 1.7743 2.0970 33 1 -0.2500 5.8661 -0.3668 34 1 1.5578 7.4610 -2.6451 35 1 0.7014 8.2095 -1.2759 36 1 2.4670 8.3812 -1.4224 37 1 4.2423 7.4070 -1.3442 38 1 6.1643 7.0262 0.1756 39 1 5.2833 5.6909 0.9554 40 1 4.6776 7.3586 1.0964 41 1 5.2340 4.5248 -1.2062 42 1 4.4175 5.2464 -2.6137 43 1 5.9987 5.8705 -2.0855 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416456915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:34 Heat of formation + Delta-G solvation = -51.154297 kcal Electronic energy + Delta-G solvation = -26198.826272 eV Core-core repulsion = 22598.903421 eV Total energy + Delta-G solvation = -3599.922850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.24414 -38.32568 -37.68773 -36.90084 -36.34890 -35.12778 -34.18886 -32.44558 -30.27429 -28.96142 -28.08306 -28.04670 -24.46831 -24.30473 -22.93346 -22.05088 -20.45080 -20.36967 -19.32545 -18.64273 -17.88482 -17.35887 -16.89307 -16.78645 -16.25519 -15.90569 -15.60639 -15.32892 -15.00339 -14.73388 -14.62082 -14.23252 -13.99213 -13.75059 -13.65094 -13.58905 -13.26835 -13.11788 -13.07363 -13.01426 -12.75665 -12.64680 -12.52912 -12.37981 -12.24624 -12.15791 -11.90307 -11.68886 -11.50791 -11.31004 -10.99068 -10.77240 -10.53289 -10.03757 -9.77323 -8.21698 -6.15831 -0.36933 0.65025 1.30092 1.36749 1.45767 1.70515 1.71798 2.05311 2.37745 2.76291 3.12000 3.37785 3.59290 3.80961 3.91275 3.96603 4.13797 4.19207 4.29453 4.34813 4.41173 4.43432 4.54050 4.64505 4.74612 4.76321 4.81983 4.92596 4.97231 5.03755 5.09045 5.21846 5.25072 5.28018 5.35452 5.49404 5.53511 5.61852 5.67321 6.08229 6.36781 6.45621 6.86756 6.87778 7.43582 8.94833 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.007700 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.019827 B = 3635.565856 C = 5089.455201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.268 3.732 4 H 0.027 0.973 5 C -0.501 4.501 6 H 0.047 0.953 7 C 0.036 3.964 8 N -0.931 5.931 9 Si 0.893 3.107 10 H -0.285 1.285 11 H -0.282 1.282 12 H -0.231 1.231 13 N -1.085 6.085 14 S 2.742 3.258 15 O -0.997 6.997 16 O -0.974 6.974 17 C -0.587 4.587 18 C 0.060 3.940 19 N -0.447 5.447 20 C 0.053 3.947 21 C 0.197 3.803 22 C 0.000 4.000 23 C -0.136 4.136 24 C -0.138 4.138 25 N -0.429 5.429 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.262 0.738 32 H 0.417 0.583 33 H 0.223 0.777 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.032 0.968 42 H 0.041 0.959 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 15.655 -2.727 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.161 3.839 4 H 0.045 0.955 5 C -0.540 4.540 6 H 0.065 0.935 7 C -0.163 4.163 8 N -0.572 5.572 9 Si 0.718 3.282 10 H -0.211 1.211 11 H -0.207 1.207 12 H -0.154 1.154 13 N -0.845 5.845 14 S 2.829 3.171 15 O -0.987 6.987 16 O -0.964 6.964 17 C -0.800 4.800 18 C -0.083 4.083 19 N -0.126 5.126 20 C -0.087 4.087 21 C -0.070 4.070 22 C -0.019 4.019 23 C -0.194 4.194 24 C -0.196 4.196 25 N -0.146 5.146 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.252 0.748 33 H 0.240 0.760 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.506 15.316 -2.406 17.226 hybrid contribution 0.203 0.217 -1.131 1.169 sum -7.303 15.533 -3.537 17.525 Atomic orbital electron populations 1.21817 0.95462 1.01521 1.01675 1.22171 0.95504 0.97919 1.01670 1.18570 0.93896 0.90372 0.81058 0.95484 1.21246 0.90613 1.40435 1.01731 0.93471 1.25367 0.95403 0.94672 1.00848 1.70074 1.12807 1.45733 1.28538 0.86648 0.82455 0.77653 0.81440 1.21114 1.20732 1.15371 1.54863 1.66878 1.47125 1.15597 1.00211 0.72655 0.72120 0.72116 1.93508 1.86750 1.82546 1.35853 1.93555 1.49636 1.81711 1.71453 1.33247 1.00833 1.21403 1.24487 1.22984 0.96792 0.91420 0.97133 1.45870 1.05435 1.21930 1.39382 1.22652 1.06935 0.82895 0.96227 1.24178 0.90278 0.92640 0.99912 1.19738 0.85057 0.99281 0.97866 1.21747 1.00225 1.01623 0.95827 1.21748 1.00797 0.98800 0.98302 1.70336 1.12454 1.15474 1.16294 0.92889 0.93643 0.91481 0.92861 0.91441 0.92842 0.74816 0.76020 0.88774 0.86501 0.86840 0.85886 0.89329 0.94421 0.91996 0.94832 0.93956 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 9.09 71.98 0.65 -4.79 16 2 C -0.13 -5.65 4.91 30.60 0.15 -5.50 16 3 C 0.27 12.56 1.79 44.24 0.08 12.64 16 4 H 0.03 1.33 6.27 -2.39 -0.01 1.32 16 5 C -0.50 -27.66 9.26 25.60 0.24 -27.42 16 6 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 7 C 0.04 2.03 5.33 84.66 0.45 2.48 16 8 N -0.93 -56.34 13.96 21.45 0.30 -56.04 16 9 Si 0.89 43.08 25.79 68.60 1.77 44.84 16 10 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.23 -10.34 5.57 99.48 0.55 -9.79 16 13 N -1.09 -45.63 4.89 -172.52 -0.84 -46.47 16 14 S 2.74 108.50 5.71 -56.49 -0.32 108.18 16 15 O -1.00 -42.22 18.02 -128.00 -2.31 -44.53 16 16 O -0.97 -39.12 16.50 -128.00 -2.11 -41.23 16 17 C -0.59 -22.49 7.03 83.52 0.59 -21.90 16 18 C 0.06 1.73 11.48 83.09 0.95 2.69 16 19 N -0.45 -11.22 3.15 -537.61 -1.69 -12.91 16 20 C 0.05 0.60 10.86 127.77 1.39 1.99 16 21 C 0.20 6.35 6.43 138.13 0.89 7.24 16 22 C 0.00 0.01 3.25 -11.54 -0.04 -0.03 16 23 C -0.14 -3.41 9.15 71.98 0.66 -2.75 16 24 C -0.14 -4.23 9.18 71.98 0.66 -3.57 16 25 N -0.43 -17.66 11.21 -185.62 -2.08 -19.75 16 26 H 0.05 1.89 7.39 -2.39 -0.02 1.87 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 2.34 5.18 -2.39 -0.01 2.32 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.42 16.31 8.96 -96.75 -0.87 15.45 16 33 H 0.22 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.79 6.98 -2.39 -0.02 0.78 16 37 H 0.12 1.94 6.69 -2.39 -0.02 1.93 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -79.30 362.22 -0.63 -79.92 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.01 Total: 26.91 kcal Atomic # 6 Polarization: -45.60 SS G_CDS: 6.67 Total: -38.93 kcal Atomic # 7 Polarization: -130.85 SS G_CDS: -4.32 Total: -135.17 kcal Atomic # 8 Polarization: -81.34 SS G_CDS: -4.42 Total: -85.76 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.77 Total: 44.84 kcal Atomic # 16 Polarization: 108.50 SS G_CDS: -0.32 Total: 108.18 kcal Total: -79.30 -0.63 -79.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416456915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.770 kcal (2) G-P(sol) polarization free energy of solvation -79.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds