Wall clock time and date at job start Tue Mar 31 2020 11:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46781 * 2 1 4 4 H 1.08991 * 109.47511 * 306.77457 * 3 2 1 5 5 C 1.50707 * 109.46705 * 186.77822 * 3 2 1 6 6 H 1.08001 * 119.99620 * 244.97807 * 5 3 2 7 7 C 1.37873 * 119.99990 * 64.97468 * 5 3 2 8 8 N 1.31514 * 119.99550 * 186.04756 * 7 5 3 9 9 Si 1.86791 * 120.00281 * 6.05171 * 7 5 3 10 10 H 1.48508 * 109.47023 * 269.99966 * 9 7 5 11 11 H 1.48499 * 109.47358 * 29.99722 * 9 7 5 12 12 H 1.48500 * 109.47337 * 149.99889 * 9 7 5 13 13 N 1.46495 * 109.46816 * 66.78245 * 3 2 1 14 14 C 1.34778 * 119.99599 * 274.98960 * 13 3 2 15 15 O 1.21361 * 120.00072 * 0.02562 * 14 13 3 16 16 C 1.49329 * 119.99951 * 180.02562 * 14 13 3 17 17 O 1.21391 * 119.99912 * 0.02562 * 16 14 13 18 18 N 1.34778 * 120.00070 * 180.02562 * 16 14 13 19 19 C 1.39773 * 119.99884 * 184.99078 * 18 16 14 20 20 C 1.38477 * 120.18117 * 29.84888 * 19 18 16 21 21 C 1.38693 * 120.56867 * 179.97438 * 20 19 18 22 22 C 1.36671 * 120.60574 * 0.02562 * 21 20 19 23 23 C 1.39740 * 119.91315 * 359.97438 * 22 21 20 24 24 C 1.46485 * 133.98553 * 179.97438 * 23 22 21 25 25 C 1.34256 * 107.00593 * 180.02562 * 24 23 22 26 26 N 1.36780 * 109.90420 * 0.02562 * 25 24 23 27 27 H 0.97000 * 125.06994 * 180.02562 * 26 25 24 28 28 C 1.37731 * 109.85887 * 359.76575 * 26 25 24 29 29 H 1.09000 * 109.47586 * 299.99863 * 1 2 3 30 30 H 1.09005 * 109.46896 * 60.00121 * 1 2 3 31 31 H 1.09001 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46886 * 240.00220 * 2 1 3 33 33 H 1.08993 * 109.47164 * 120.00160 * 2 1 3 34 34 H 0.96994 * 120.00594 * 354.97850 * 8 7 5 35 35 H 0.97000 * 120.00695 * 94.99958 * 13 3 2 36 36 H 0.96996 * 119.99897 * 4.98387 * 18 16 14 37 37 H 1.08003 * 119.71977 * 0.02562 * 20 19 18 38 38 H 1.08006 * 119.69558 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.04778 * 179.97438 * 22 21 20 40 40 H 1.08000 * 126.49974 * 0.03215 * 24 23 22 41 41 H 1.07994 * 125.05222 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5810 1.9902 -0.8231 5 6 3.5376 1.4458 -0.1677 6 1 4.1694 1.8090 0.6294 7 6 4.1012 0.9852 -1.3386 8 7 5.4078 0.8762 -1.4411 9 14 3.0090 0.5160 -2.7795 10 1 2.6478 -0.9210 -2.6795 11 1 1.7738 1.3399 -2.7532 12 1 3.7371 0.7561 -4.0513 13 7 1.6893 2.0843 1.2693 14 6 0.4760 2.6499 1.4259 15 8 -0.3262 2.6271 0.5154 16 6 0.1187 3.3046 2.7195 17 8 0.9212 3.3279 3.6300 18 7 -1.0949 3.8698 2.8762 19 6 -1.3924 4.5728 4.0470 20 6 -0.3874 5.2237 4.7427 21 6 -0.6737 5.9241 5.9050 22 6 -1.9522 5.9839 6.3844 23 6 -2.9839 5.3354 5.7005 24 6 -4.4247 5.1975 5.9261 25 6 -4.9094 4.4487 4.9227 26 7 -3.8966 4.0957 4.0739 27 1 -4.0016 3.5554 3.2751 28 6 -2.7063 4.6267 4.5192 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.9784 1.1877 -0.7212 35 1 2.3303 2.1024 1.9971 36 1 -1.7616 3.7886 2.1765 37 1 0.6280 5.1863 4.3766 38 1 0.1210 6.4270 6.4362 39 1 -2.1649 6.5315 7.2906 40 1 -4.9899 5.6184 6.7445 41 1 -5.9450 4.1668 4.8034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525887894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:46 Heat of formation + Delta-G solvation = -8.300678 kcal Electronic energy + Delta-G solvation = -25613.578009 eV Core-core repulsion = 21880.069479 eV Total energy + Delta-G solvation = -3733.508529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65641 -40.47331 -38.67590 -36.94395 -35.74946 -34.89520 -32.52363 -31.60130 -31.20152 -29.41777 -28.76603 -27.55528 -24.98620 -22.73456 -22.35700 -22.23464 -21.05523 -20.19584 -19.75284 -19.23991 -18.09763 -17.17582 -17.14407 -16.22750 -15.82557 -15.74538 -15.28071 -14.84239 -14.75117 -14.45129 -14.03215 -13.76141 -13.43331 -13.25839 -12.88219 -12.76593 -12.56443 -12.42165 -12.10676 -11.93211 -11.81833 -11.76830 -11.20985 -11.04370 -10.83794 -10.74018 -10.58260 -9.92079 -9.79517 -9.36813 -9.24289 -8.99510 -8.63338 -8.41372 -8.35979 -7.60930 -6.63823 -4.32544 0.83417 1.44369 1.70749 2.45646 2.54359 2.85630 3.28913 3.38238 3.45839 3.51276 3.79478 3.90928 4.33514 4.52531 4.69278 4.82304 4.87908 5.04567 5.11297 5.29290 5.35178 5.45180 5.68534 5.78636 5.86854 5.92218 6.05651 6.13241 6.19514 6.46817 6.51081 6.52503 6.56300 6.59056 6.68783 6.80391 6.90170 6.99594 7.09650 7.17003 7.23184 7.44622 7.72649 8.11755 8.21004 8.42888 8.71132 9.38614 10.77335 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026450 B = 0.003011 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.333053 B = 9295.866023 C =10062.087536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.239 3.761 4 H 0.054 0.946 5 C -0.614 4.614 6 H 0.065 0.935 7 C 0.037 3.963 8 N -0.900 5.900 9 Si 1.049 2.951 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.286 1.286 13 N -0.659 5.659 14 C 0.495 3.505 15 O -0.533 6.533 16 C 0.506 3.494 17 O -0.499 6.499 18 N -0.650 5.650 19 C 0.138 3.862 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.090 4.090 23 C -0.092 4.092 24 C -0.206 4.206 25 C 0.053 3.947 26 N -0.594 5.594 27 H 0.415 0.585 28 C 0.075 3.925 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.270 0.730 35 H 0.406 0.594 36 H 0.417 0.583 37 H 0.143 0.857 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.147 0.853 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.564 7.603 12.738 24.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.137 3.863 4 H 0.072 0.928 5 C -0.652 4.652 6 H 0.084 0.916 7 C -0.169 4.169 8 N -0.534 5.534 9 Si 0.877 3.123 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.212 1.212 13 N -0.308 5.308 14 C 0.274 3.726 15 O -0.411 6.411 16 C 0.289 3.711 17 O -0.372 6.372 18 N -0.297 5.297 19 C 0.042 3.958 20 C -0.129 4.129 21 C -0.141 4.141 22 C -0.109 4.109 23 C -0.097 4.097 24 C -0.232 4.232 25 C -0.074 4.074 26 N -0.197 5.197 27 H 0.252 0.748 28 C -0.034 4.034 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.242 0.758 36 H 0.253 0.747 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -19.463 6.839 11.031 23.393 hybrid contribution -0.085 0.270 1.257 1.288 sum -19.548 7.109 12.287 24.158 Atomic orbital electron populations 1.21918 0.97173 0.99373 1.01942 1.22286 0.94017 0.99550 1.01910 1.19478 0.96822 0.88862 0.81170 0.92809 1.22153 0.89374 1.49161 1.04470 0.91650 1.25714 0.97824 0.93604 0.99764 1.70815 1.03589 1.42133 1.36823 0.83952 0.75261 0.77177 0.75894 1.20600 1.19864 1.21249 1.46201 1.13225 1.52647 1.18732 1.19666 0.84494 0.81301 0.87122 1.90729 1.49441 1.59321 1.41657 1.20834 0.82030 0.78962 0.89291 1.90749 1.48650 1.56232 1.41572 1.43108 1.16080 1.51856 1.18610 1.16777 0.90346 0.98648 0.89998 1.21017 0.99210 0.96499 0.96176 1.20550 0.96499 1.00541 0.96550 1.20275 0.91483 0.99506 0.99666 1.19052 0.94081 1.01448 0.95122 1.21669 0.92356 1.07154 1.01982 1.21822 0.93254 1.00327 0.91980 1.41731 1.05605 1.47032 1.25335 0.74827 1.17956 0.86211 1.02113 0.97084 0.93432 0.92730 0.94561 0.91701 0.92336 0.91930 0.75840 0.74681 0.83909 0.85488 0.85909 0.83507 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.55 37.16 0.32 -2.43 16 2 C -0.14 -2.96 5.18 -26.73 -0.14 -3.10 16 3 C 0.24 5.52 1.80 -69.08 -0.12 5.40 16 4 H 0.05 1.33 6.08 -51.93 -0.32 1.02 16 5 C -0.61 -16.30 9.10 -34.44 -0.31 -16.62 16 6 H 0.07 1.84 7.95 -52.49 -0.42 1.42 16 7 C 0.04 1.03 5.42 -17.82 -0.10 0.94 16 8 N -0.90 -26.59 13.70 55.43 0.76 -25.83 16 9 Si 1.05 24.58 25.35 -169.99 -4.31 20.27 16 10 H -0.28 -6.18 6.75 56.52 0.38 -5.80 16 11 H -0.27 -6.10 6.37 56.52 0.36 -5.74 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.66 -13.34 5.03 -55.41 -0.28 -13.62 16 14 C 0.50 9.16 6.54 -11.64 -0.08 9.08 16 15 O -0.53 -10.37 13.63 5.49 0.07 -10.30 16 16 C 0.51 8.26 7.65 -11.64 -0.09 8.17 16 17 O -0.50 -8.88 13.92 5.46 0.08 -8.81 16 18 N -0.65 -8.77 5.34 -10.20 -0.05 -8.83 16 19 C 0.14 1.85 6.36 -83.59 -0.53 1.32 16 20 C -0.11 -1.45 8.66 -39.33 -0.34 -1.79 16 21 C -0.12 -1.38 9.97 -39.98 -0.40 -1.77 16 22 C -0.09 -0.95 10.05 -39.59 -0.40 -1.35 16 23 C -0.09 -1.04 6.37 -105.15 -0.67 -1.71 16 24 C -0.21 -1.83 11.08 -37.67 -0.42 -2.24 16 25 C 0.05 0.39 11.82 -16.75 -0.20 0.20 16 26 N -0.59 -5.28 6.07 -10.54 -0.06 -5.35 16 27 H 0.42 2.79 8.96 -40.82 -0.37 2.43 16 28 C 0.07 0.89 7.19 -83.80 -0.60 0.28 16 29 H 0.05 0.87 5.60 -51.93 -0.29 0.58 16 30 H 0.05 1.04 7.95 -51.93 -0.41 0.63 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.43 4.39 -51.93 -0.23 1.20 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.27 7.93 8.72 -40.82 -0.36 7.57 16 35 H 0.41 7.95 8.00 -40.82 -0.33 7.62 16 36 H 0.42 4.86 8.28 -40.82 -0.34 4.52 16 37 H 0.14 2.10 6.12 -52.48 -0.32 1.77 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -31.53 339.57 -7.52 -39.05 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -4.77 Total: 13.92 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -4.08 Total: -5.63 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.36 Total: -53.62 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.15 Total: -19.11 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -4.31 Total: 20.27 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.53 -7.52 -39.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525887894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.752 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds