Wall clock time and date at job start Tue Mar 31 2020 11:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46781 * 2 1 4 4 H 1.08991 * 109.47511 * 306.77457 * 3 2 1 5 5 C 1.50707 * 109.46705 * 186.77822 * 3 2 1 6 6 H 1.08001 * 119.99620 * 244.97807 * 5 3 2 7 7 C 1.37873 * 119.99990 * 64.97468 * 5 3 2 8 8 N 1.31514 * 119.99550 * 186.04756 * 7 5 3 9 9 Si 1.86791 * 120.00281 * 6.05171 * 7 5 3 10 10 H 1.48508 * 109.47023 * 269.99966 * 9 7 5 11 11 H 1.48499 * 109.47358 * 29.99722 * 9 7 5 12 12 H 1.48500 * 109.47337 * 149.99889 * 9 7 5 13 13 N 1.46495 * 109.46816 * 66.78245 * 3 2 1 14 14 C 1.34778 * 119.99599 * 274.98960 * 13 3 2 15 15 O 1.21361 * 120.00072 * 0.02562 * 14 13 3 16 16 C 1.49329 * 119.99951 * 180.02562 * 14 13 3 17 17 O 1.21391 * 119.99912 * 0.02562 * 16 14 13 18 18 N 1.34778 * 120.00070 * 180.02562 * 16 14 13 19 19 C 1.39773 * 119.99884 * 184.99078 * 18 16 14 20 20 C 1.38477 * 120.18117 * 29.84888 * 19 18 16 21 21 C 1.38693 * 120.56867 * 179.97438 * 20 19 18 22 22 C 1.36671 * 120.60574 * 0.02562 * 21 20 19 23 23 C 1.39740 * 119.91315 * 359.97438 * 22 21 20 24 24 C 1.46485 * 133.98553 * 179.97438 * 23 22 21 25 25 C 1.34256 * 107.00593 * 180.02562 * 24 23 22 26 26 N 1.36780 * 109.90420 * 0.02562 * 25 24 23 27 27 H 0.97000 * 125.06994 * 180.02562 * 26 25 24 28 28 C 1.37731 * 109.85887 * 359.76575 * 26 25 24 29 29 H 1.09000 * 109.47586 * 299.99863 * 1 2 3 30 30 H 1.09005 * 109.46896 * 60.00121 * 1 2 3 31 31 H 1.09001 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46886 * 240.00220 * 2 1 3 33 33 H 1.08993 * 109.47164 * 120.00160 * 2 1 3 34 34 H 0.96994 * 120.00594 * 354.97850 * 8 7 5 35 35 H 0.97000 * 120.00695 * 94.99958 * 13 3 2 36 36 H 0.96996 * 119.99897 * 4.98387 * 18 16 14 37 37 H 1.08003 * 119.71977 * 0.02562 * 20 19 18 38 38 H 1.08006 * 119.69558 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.04778 * 179.97438 * 22 21 20 40 40 H 1.08000 * 126.49974 * 0.03215 * 24 23 22 41 41 H 1.07994 * 125.05222 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5810 1.9902 -0.8231 5 6 3.5376 1.4458 -0.1677 6 1 4.1694 1.8090 0.6294 7 6 4.1012 0.9852 -1.3386 8 7 5.4078 0.8762 -1.4411 9 14 3.0090 0.5160 -2.7795 10 1 2.6478 -0.9210 -2.6795 11 1 1.7738 1.3399 -2.7532 12 1 3.7371 0.7561 -4.0513 13 7 1.6893 2.0843 1.2693 14 6 0.4760 2.6499 1.4259 15 8 -0.3262 2.6271 0.5154 16 6 0.1187 3.3046 2.7195 17 8 0.9212 3.3279 3.6300 18 7 -1.0949 3.8698 2.8762 19 6 -1.3924 4.5728 4.0470 20 6 -0.3874 5.2237 4.7427 21 6 -0.6737 5.9241 5.9050 22 6 -1.9522 5.9839 6.3844 23 6 -2.9839 5.3354 5.7005 24 6 -4.4247 5.1975 5.9261 25 6 -4.9094 4.4487 4.9227 26 7 -3.8966 4.0957 4.0739 27 1 -4.0016 3.5554 3.2751 28 6 -2.7063 4.6267 4.5192 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.9784 1.1877 -0.7212 35 1 2.3303 2.1024 1.9971 36 1 -1.7616 3.7886 2.1765 37 1 0.6280 5.1863 4.3766 38 1 0.1210 6.4270 6.4362 39 1 -2.1649 6.5315 7.2906 40 1 -4.9899 5.6184 6.7445 41 1 -5.9450 4.1668 4.8034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525887894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:45 Heat of formation + Delta-G solvation = -31.067685 kcal Electronic energy + Delta-G solvation = -25614.565260 eV Core-core repulsion = 21880.069479 eV Total energy + Delta-G solvation = -3734.495781 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.57042 -41.70594 -40.08288 -37.89993 -37.38642 -36.07344 -34.51912 -33.25474 -32.03444 -30.27005 -29.66044 -29.29187 -26.36300 -24.34130 -23.53264 -23.20304 -22.11964 -21.50659 -21.14021 -20.54274 -19.58569 -18.64397 -18.23729 -17.57247 -17.16510 -16.87528 -16.59029 -15.96376 -15.75353 -15.57807 -15.25845 -15.08093 -14.88218 -14.53598 -14.53406 -14.11383 -13.89792 -13.73069 -13.67631 -13.00393 -12.89889 -12.75585 -12.61679 -12.55054 -12.35798 -12.22471 -11.75403 -11.71801 -11.51622 -11.01783 -10.73998 -10.69314 -10.18674 -10.06747 -9.22857 -8.83924 -8.44957 -6.53104 -0.18091 0.43952 0.62045 1.19561 1.41585 1.51466 1.67854 1.79710 2.07790 2.16203 2.39510 2.58443 2.90309 2.99484 3.34021 3.79572 4.04042 4.07570 4.23110 4.23942 4.31331 4.41782 4.44944 4.54163 4.73261 4.75171 4.88375 5.01504 5.02328 5.08109 5.17845 5.22970 5.30693 5.33940 5.46779 5.52780 5.62138 5.76201 5.77322 5.87772 5.94443 6.13399 6.37530 6.44035 6.61040 6.64986 6.91973 7.26284 8.56240 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026450 B = 0.003011 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.333053 B = 9295.866023 C =10062.087536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.245 3.755 4 H 0.042 0.958 5 C -0.612 4.612 6 H 0.036 0.964 7 C -0.010 4.010 8 N -0.933 5.933 9 Si 1.081 2.919 10 H -0.254 1.254 11 H -0.256 1.256 12 H -0.288 1.288 13 N -0.668 5.668 14 C 0.501 3.499 15 O -0.539 6.539 16 C 0.512 3.488 17 O -0.519 6.519 18 N -0.631 5.631 19 C 0.116 3.884 20 C -0.128 4.128 21 C -0.132 4.132 22 C -0.085 4.085 23 C -0.110 4.110 24 C -0.222 4.222 25 C 0.067 3.933 26 N -0.590 5.590 27 H 0.425 0.575 28 C 0.060 3.940 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.257 0.743 35 H 0.408 0.592 36 H 0.425 0.575 37 H 0.123 0.877 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.170 0.830 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.473 7.511 13.432 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.141 3.859 4 H 0.060 0.940 5 C -0.650 4.650 6 H 0.054 0.946 7 C -0.209 4.209 8 N -0.568 5.568 9 Si 0.903 3.097 10 H -0.179 1.179 11 H -0.180 1.180 12 H -0.214 1.214 13 N -0.317 5.317 14 C 0.281 3.719 15 O -0.418 6.418 16 C 0.294 3.706 17 O -0.394 6.394 18 N -0.278 5.278 19 C 0.021 3.979 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.104 4.104 23 C -0.116 4.116 24 C -0.246 4.246 25 C -0.059 4.059 26 N -0.194 5.194 27 H 0.263 0.737 28 C -0.049 4.049 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.243 0.757 36 H 0.263 0.737 37 H 0.141 0.859 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.188 0.812 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -23.428 6.762 11.748 27.067 hybrid contribution 1.031 0.407 1.176 1.616 sum -22.397 7.169 12.924 26.834 Atomic orbital electron populations 1.21821 0.94801 1.01178 1.01728 1.22197 0.96095 0.97650 1.01720 1.19193 0.94215 0.90371 0.82079 0.94040 1.22343 0.91427 1.47790 1.03447 0.94559 1.27009 0.98082 0.93408 1.02434 1.70928 1.04642 1.44499 1.36698 0.83564 0.74407 0.78753 0.72944 1.17931 1.18048 1.21443 1.46039 1.14237 1.53528 1.17929 1.19910 0.83615 0.80546 0.87870 1.90713 1.49470 1.59346 1.42221 1.20300 0.82908 0.79327 0.88086 1.90752 1.49499 1.57318 1.41811 1.42913 1.15010 1.50727 1.19110 1.16884 0.91337 0.99604 0.90112 1.21029 0.98508 0.97950 0.97445 1.20760 0.97688 1.00613 0.96062 1.20621 0.90932 0.98704 1.00169 1.19545 0.95715 1.01282 0.95024 1.22032 0.91145 1.08032 1.03403 1.22549 0.94474 0.98412 0.90509 1.41873 1.05001 1.46688 1.25861 0.73699 1.18002 0.86409 1.02840 0.97674 0.93464 0.93075 0.91770 0.92191 0.92273 0.93389 0.75711 0.73675 0.85918 0.83759 0.83245 0.81249 0.77064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 8.55 71.98 0.62 -4.20 16 2 C -0.14 -5.69 5.18 30.60 0.16 -5.53 16 3 C 0.25 11.30 1.80 44.25 0.08 11.38 16 4 H 0.04 2.04 6.08 -2.39 -0.01 2.02 16 5 C -0.61 -33.36 9.10 25.60 0.23 -33.13 16 6 H 0.04 2.14 7.95 -2.91 -0.02 2.11 16 7 C -0.01 -0.54 5.42 84.65 0.46 -0.08 16 8 N -0.93 -56.67 13.70 21.45 0.29 -56.38 16 9 Si 1.08 48.96 25.35 68.60 1.74 50.70 16 10 H -0.25 -10.46 6.75 99.48 0.67 -9.79 16 11 H -0.26 -10.80 6.37 99.48 0.63 -10.17 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 13 N -0.67 -27.33 5.03 -447.56 -2.25 -29.59 16 14 C 0.50 18.40 6.54 87.23 0.57 18.97 16 15 O -0.54 -20.41 13.63 -3.28 -0.04 -20.45 16 16 C 0.51 16.78 7.65 87.23 0.67 17.45 16 17 O -0.52 -18.95 13.92 -3.37 -0.05 -19.00 16 18 N -0.63 -16.78 5.34 -304.54 -1.63 -18.41 16 19 C 0.12 3.07 6.36 38.29 0.24 3.31 16 20 C -0.13 -3.52 8.66 22.44 0.19 -3.33 16 21 C -0.13 -2.91 9.97 22.01 0.22 -2.69 16 22 C -0.09 -1.66 10.05 22.27 0.22 -1.44 16 23 C -0.11 -2.27 6.37 -20.21 -0.13 -2.40 16 24 C -0.22 -3.18 11.08 23.51 0.26 -2.92 16 25 C 0.07 0.74 11.82 83.01 0.98 1.72 16 26 N -0.59 -8.91 6.07 -187.26 -1.14 -10.05 16 27 H 0.42 4.57 8.96 -92.71 -0.83 3.74 16 28 C 0.06 1.33 7.19 39.13 0.28 1.61 16 29 H 0.05 1.63 5.60 -2.39 -0.01 1.62 16 30 H 0.05 1.81 7.95 -2.38 -0.02 1.80 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 2.52 4.39 -2.38 -0.01 2.51 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.26 15.77 8.72 -92.71 -0.81 14.97 16 35 H 0.41 16.46 8.00 -92.71 -0.74 15.72 16 36 H 0.42 9.49 8.28 -92.71 -0.77 8.73 16 37 H 0.12 3.81 6.12 -2.91 -0.02 3.79 16 38 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.21 0.46 8.06 -2.91 -0.02 0.44 16 Total: -1.00 -69.69 339.57 0.62 -69.08 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -1.37 Total: 35.38 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.06 Total: -1.28 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.72 Total: -114.42 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.09 Total: -39.45 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.74 Total: 50.70 kcal Total: -69.69 0.62 -69.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525887894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.009 kcal (2) G-P(sol) polarization free energy of solvation -69.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds