Wall clock time and date at job start Tue Mar 31 2020 11:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 H 1.08998 * 109.47070 * 54.99814 * 3 2 1 5 5 C 1.50695 * 109.46894 * 174.99886 * 3 2 1 6 6 H 1.07997 * 120.00457 * 119.99898 * 5 3 2 7 7 C 1.37876 * 120.00201 * 300.00184 * 5 3 2 8 8 N 1.31519 * 119.99823 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00339 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46954 * 59.99464 * 9 7 5 11 11 H 1.48498 * 109.47357 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46928 * 299.99897 * 9 7 5 13 13 N 1.46494 * 109.46849 * 294.99509 * 3 2 1 14 14 C 1.34778 * 119.99678 * 85.00515 * 13 3 2 15 15 O 1.21367 * 120.00264 * 359.97438 * 14 13 3 16 16 C 1.49333 * 120.00169 * 179.97438 * 14 13 3 17 17 O 1.21391 * 119.99448 * 359.97438 * 16 14 13 18 18 N 1.34770 * 120.00131 * 180.02562 * 16 14 13 19 19 C 1.39771 * 119.99893 * 175.52131 * 18 16 14 20 20 C 1.38484 * 120.18114 * 34.68795 * 19 18 16 21 21 C 1.38688 * 120.56882 * 179.97438 * 20 19 18 22 22 C 1.36669 * 120.60694 * 359.97438 * 21 20 19 23 23 C 1.39736 * 119.91609 * 0.02732 * 22 21 20 24 24 C 1.46487 * 133.99032 * 179.97438 * 23 22 21 25 25 C 1.34256 * 107.00564 * 180.02562 * 24 23 22 26 26 N 1.36774 * 109.90715 * 0.02562 * 25 24 23 27 27 H 0.96996 * 125.07028 * 180.02562 * 26 25 24 28 28 C 1.37739 * 109.85686 * 359.73946 * 26 25 24 29 29 H 1.09008 * 109.47154 * 300.00203 * 1 2 3 30 30 H 1.08998 * 109.47181 * 60.00177 * 1 2 3 31 31 H 1.08993 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47109 * 239.99826 * 2 1 3 33 33 H 1.09008 * 109.46734 * 119.99627 * 2 1 3 34 34 H 0.97003 * 119.99620 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00811 * 265.00174 * 13 3 2 36 36 H 0.96998 * 119.99986 * 355.51226 * 18 16 14 37 37 H 1.07994 * 119.71225 * 359.97438 * 20 19 18 38 38 H 1.08006 * 119.69163 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.04759 * 180.02562 * 22 21 20 40 40 H 1.08006 * 126.49890 * 0.02740 * 24 23 22 41 41 H 1.08001 * 125.04862 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8811 1.3819 10 1 6.4995 2.2814 1.3822 11 1 6.3977 0.2176 2.6510 12 1 6.5975 0.1472 0.2350 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3401 2.6319 -0.4338 16 6 0.0403 3.3324 -2.6428 17 8 0.8160 3.3652 -3.5760 18 7 -1.1767 3.8997 -2.7578 19 6 -1.5120 4.6058 -3.9166 20 6 -1.0295 4.1931 -5.1473 21 6 -1.3575 4.8874 -6.3023 22 6 -2.1628 5.9902 -6.2462 23 6 -2.6623 6.4267 -5.0163 24 6 -3.5252 7.5365 -4.6047 25 6 -3.6638 7.4527 -3.2720 26 7 -2.9598 6.3805 -2.7970 27 1 -2.9084 6.1161 -1.8652 28 6 -2.3400 5.7286 -3.8401 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0604 2.9503 35 1 2.2720 2.1231 -1.9978 36 1 -1.8200 3.8180 -2.0364 37 1 -0.3924 3.3233 -5.2082 38 1 -0.9737 4.5528 -7.2548 39 1 -2.4128 6.5238 -7.1514 40 1 -3.9664 8.2811 -5.2509 41 1 -4.2449 8.1311 -2.6649 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525887895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:49 Heat of formation + Delta-G solvation = -9.133694 kcal Electronic energy + Delta-G solvation = -25523.211808 eV Core-core repulsion = 21789.667156 eV Total energy + Delta-G solvation = -3733.544652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.58073 -40.33319 -38.48606 -36.87267 -35.53314 -34.76064 -32.45899 -31.14536 -31.01988 -29.35057 -28.69907 -27.29549 -24.90543 -23.17064 -22.32534 -22.16361 -20.91106 -20.04674 -19.53883 -19.07153 -17.83639 -17.09322 -16.38111 -15.99008 -15.67722 -15.59143 -15.14423 -14.77451 -14.68348 -14.37097 -14.14320 -13.80734 -13.38168 -13.19175 -12.80973 -12.76693 -12.17972 -11.98913 -11.76671 -11.71989 -11.63581 -11.35197 -11.14707 -10.97395 -10.87661 -10.61435 -10.39087 -10.30219 -9.74119 -9.28305 -9.18802 -9.08742 -8.59797 -8.35410 -8.08581 -7.57702 -6.20570 -4.30509 0.90938 1.50479 1.81777 2.53037 2.65644 2.93271 3.23269 3.28160 3.30531 3.61151 3.84253 4.04590 4.30727 4.58097 4.75811 4.93024 5.01410 5.10934 5.12833 5.34359 5.40761 5.51875 5.74826 5.85395 6.20071 6.26170 6.27303 6.32040 6.50870 6.53064 6.57812 6.62022 6.90145 6.94698 7.04167 7.09331 7.13489 7.22924 7.29372 7.45436 7.59766 7.73969 7.88278 8.04342 8.39580 8.57509 8.81730 9.36447 10.84772 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023312 B = 0.002837 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.831985 B = 9866.571871 C =10115.399592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.666 5.666 14 C 0.495 3.505 15 O -0.532 6.532 16 C 0.506 3.494 17 O -0.503 6.503 18 N -0.652 5.652 19 C 0.136 3.864 20 C -0.104 4.104 21 C -0.125 4.125 22 C -0.089 4.089 23 C -0.094 4.094 24 C -0.207 4.207 25 C 0.053 3.947 26 N -0.593 5.593 27 H 0.416 0.584 28 C 0.077 3.923 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.027 0.973 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.417 0.583 37 H 0.144 0.856 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.147 0.853 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 10.585 -12.046 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.315 5.315 14 C 0.273 3.727 15 O -0.411 6.411 16 C 0.289 3.711 17 O -0.376 6.376 18 N -0.299 5.299 19 C 0.039 3.961 20 C -0.125 4.125 21 C -0.144 4.144 22 C -0.108 4.108 23 C -0.099 4.099 24 C -0.232 4.232 25 C -0.074 4.074 26 N -0.196 5.196 27 H 0.253 0.747 28 C -0.031 4.031 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.254 0.746 37 H 0.162 0.838 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.165 0.835 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -13.414 10.419 -11.636 20.588 hybrid contribution 0.932 -0.111 0.626 1.128 sum -12.481 10.308 -11.010 19.577 Atomic orbital electron populations 1.21856 0.98328 0.98450 1.00977 1.21968 0.92623 0.99371 1.02826 1.19015 0.94794 0.89393 0.80050 0.92782 1.21172 0.90297 1.39565 1.06629 0.91789 1.24872 0.98870 0.94549 0.95211 1.69874 1.35393 1.37359 1.09319 0.86459 0.84454 0.78442 0.77518 1.20090 1.21074 1.20006 1.46469 1.13400 1.52333 1.19254 1.19592 0.84566 0.81461 0.87049 1.90735 1.51230 1.59608 1.39525 1.20981 0.81367 0.79165 0.89601 1.90725 1.50908 1.56070 1.39918 1.43105 1.15826 1.52351 1.18603 1.16789 1.00478 0.91856 0.86928 1.21070 1.00756 1.01141 0.89571 1.20554 0.99564 0.96291 0.98040 1.20271 0.97804 0.96915 0.95790 1.19052 1.01624 0.97081 0.92158 1.21661 1.06038 1.01364 0.94183 1.21825 0.98619 0.91651 0.95298 1.41755 1.43838 1.25366 1.08647 0.74714 1.18020 1.01182 0.95237 0.88706 0.92983 0.94647 0.95429 0.94599 0.87818 0.92361 0.76334 0.74643 0.83824 0.85564 0.85975 0.83549 0.81222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.53 2.24 -69.09 -0.15 6.38 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.97 11.29 55.43 0.63 -23.35 16 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.67 -13.90 5.01 -55.41 -0.28 -14.18 16 14 C 0.49 9.59 6.45 -11.64 -0.08 9.51 16 15 O -0.53 -11.05 13.62 5.48 0.07 -10.98 16 16 C 0.51 8.56 7.73 -11.64 -0.09 8.47 16 17 O -0.50 -9.13 13.89 5.46 0.08 -9.05 16 18 N -0.65 -9.19 5.33 -10.20 -0.05 -9.24 16 19 C 0.14 1.87 6.32 -83.59 -0.53 1.34 16 20 C -0.10 -1.42 8.69 -39.32 -0.34 -1.76 16 21 C -0.12 -1.43 9.96 -39.98 -0.40 -1.83 16 22 C -0.09 -0.96 10.05 -39.59 -0.40 -1.36 16 23 C -0.09 -1.10 6.37 -105.15 -0.67 -1.77 16 24 C -0.21 -1.93 11.08 -37.66 -0.42 -2.35 16 25 C 0.05 0.43 11.82 -16.75 -0.20 0.23 16 26 N -0.59 -5.70 6.07 -10.54 -0.06 -5.77 16 27 H 0.42 3.20 8.96 -40.82 -0.37 2.83 16 28 C 0.08 0.96 7.20 -83.80 -0.60 0.35 16 29 H 0.05 1.15 7.85 -51.92 -0.41 0.74 16 30 H 0.03 0.72 5.64 -51.93 -0.29 0.43 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 2.68 5.95 -51.92 -0.31 2.37 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.40 7.91 8.01 -40.82 -0.33 7.59 16 36 H 0.42 5.19 8.30 -40.82 -0.34 4.85 16 37 H 0.14 2.10 6.17 -52.49 -0.32 1.78 16 38 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -30.10 345.00 -8.38 -38.47 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -4.84 Total: 14.70 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -4.10 Total: -1.12 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.23 Total: -52.53 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.15 Total: -20.03 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.10 -8.38 -38.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525887895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.339 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds