Wall clock time and date at job start Tue Mar 31 2020 11:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 H 1.08998 * 109.47070 * 54.99814 * 3 2 1 5 5 C 1.50695 * 109.46894 * 174.99886 * 3 2 1 6 6 H 1.07997 * 120.00457 * 119.99898 * 5 3 2 7 7 C 1.37876 * 120.00201 * 300.00184 * 5 3 2 8 8 N 1.31519 * 119.99823 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00339 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46954 * 59.99464 * 9 7 5 11 11 H 1.48498 * 109.47357 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46928 * 299.99897 * 9 7 5 13 13 N 1.46494 * 109.46849 * 294.99509 * 3 2 1 14 14 C 1.34778 * 119.99678 * 85.00515 * 13 3 2 15 15 O 1.21367 * 120.00264 * 359.97438 * 14 13 3 16 16 C 1.49333 * 120.00169 * 179.97438 * 14 13 3 17 17 O 1.21391 * 119.99448 * 359.97438 * 16 14 13 18 18 N 1.34770 * 120.00131 * 180.02562 * 16 14 13 19 19 C 1.39771 * 119.99893 * 175.52131 * 18 16 14 20 20 C 1.38484 * 120.18114 * 34.68795 * 19 18 16 21 21 C 1.38688 * 120.56882 * 179.97438 * 20 19 18 22 22 C 1.36669 * 120.60694 * 359.97438 * 21 20 19 23 23 C 1.39736 * 119.91609 * 0.02732 * 22 21 20 24 24 C 1.46487 * 133.99032 * 179.97438 * 23 22 21 25 25 C 1.34256 * 107.00564 * 180.02562 * 24 23 22 26 26 N 1.36774 * 109.90715 * 0.02562 * 25 24 23 27 27 H 0.96996 * 125.07028 * 180.02562 * 26 25 24 28 28 C 1.37739 * 109.85686 * 359.73946 * 26 25 24 29 29 H 1.09008 * 109.47154 * 300.00203 * 1 2 3 30 30 H 1.08998 * 109.47181 * 60.00177 * 1 2 3 31 31 H 1.08993 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47109 * 239.99826 * 2 1 3 33 33 H 1.09008 * 109.46734 * 119.99627 * 2 1 3 34 34 H 0.97003 * 119.99620 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00811 * 265.00174 * 13 3 2 36 36 H 0.96998 * 119.99986 * 355.51226 * 18 16 14 37 37 H 1.07994 * 119.71225 * 359.97438 * 20 19 18 38 38 H 1.08006 * 119.69163 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.04759 * 180.02562 * 22 21 20 40 40 H 1.08006 * 126.49890 * 0.02740 * 24 23 22 41 41 H 1.08001 * 125.04862 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8811 1.3819 10 1 6.4995 2.2814 1.3822 11 1 6.3977 0.2176 2.6510 12 1 6.5975 0.1472 0.2350 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3401 2.6319 -0.4338 16 6 0.0403 3.3324 -2.6428 17 8 0.8160 3.3652 -3.5760 18 7 -1.1767 3.8997 -2.7578 19 6 -1.5120 4.6058 -3.9166 20 6 -1.0295 4.1931 -5.1473 21 6 -1.3575 4.8874 -6.3023 22 6 -2.1628 5.9902 -6.2462 23 6 -2.6623 6.4267 -5.0163 24 6 -3.5252 7.5365 -4.6047 25 6 -3.6638 7.4527 -3.2720 26 7 -2.9598 6.3805 -2.7970 27 1 -2.9084 6.1161 -1.8652 28 6 -2.3400 5.7286 -3.8401 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0604 2.9503 35 1 2.2720 2.1231 -1.9978 36 1 -1.8200 3.8180 -2.0364 37 1 -0.3924 3.3233 -5.2082 38 1 -0.9737 4.5528 -7.2548 39 1 -2.4128 6.5238 -7.1514 40 1 -3.9664 8.2811 -5.2509 41 1 -4.2449 8.1311 -2.6649 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525887895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:49 Heat of formation + Delta-G solvation = -29.111388 kcal Electronic energy + Delta-G solvation = -25524.078105 eV Core-core repulsion = 21789.667156 eV Total energy + Delta-G solvation = -3734.410950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.51987 -41.63075 -39.96498 -37.86396 -37.22232 -36.00990 -34.34295 -32.84985 -32.00171 -30.23440 -29.60865 -29.12366 -26.37922 -24.88538 -23.43022 -23.13498 -22.00323 -21.41375 -21.05578 -20.35487 -19.06362 -18.22606 -18.03045 -17.36559 -17.19929 -16.80851 -16.59871 -16.03842 -15.82325 -15.64428 -15.25410 -15.07653 -14.80446 -14.63407 -13.96023 -13.84705 -13.67063 -13.52540 -13.21641 -13.02413 -12.90744 -12.79694 -12.68302 -12.58846 -12.30541 -12.13357 -12.11506 -11.64872 -11.61269 -11.14003 -10.64274 -10.54372 -10.18576 -9.87543 -9.20403 -8.45142 -8.20493 -6.37726 -0.10984 0.47019 0.64900 1.27825 1.45347 1.45769 1.54074 1.81981 2.14748 2.19337 2.37966 2.70485 2.92501 3.09358 3.46624 3.82278 4.07681 4.09344 4.27016 4.46177 4.48473 4.52520 4.57572 4.68760 4.75403 4.91759 4.99354 5.04195 5.19109 5.27028 5.32808 5.35252 5.36478 5.53644 5.61750 5.67551 5.76162 5.78846 5.81436 5.96086 6.08961 6.16402 6.50503 6.62380 6.64346 6.76334 7.06572 7.34189 8.84463 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023312 B = 0.002837 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.831985 B = 9866.571871 C =10115.399592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.015 0.985 5 C -0.556 4.556 6 H 0.068 0.932 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.267 1.267 13 N -0.670 5.670 14 C 0.497 3.503 15 O -0.547 6.547 16 C 0.513 3.487 17 O -0.518 6.518 18 N -0.634 5.634 19 C 0.111 3.889 20 C -0.121 4.121 21 C -0.133 4.133 22 C -0.083 4.083 23 C -0.112 4.112 24 C -0.220 4.220 25 C 0.064 3.936 26 N -0.592 5.592 27 H 0.423 0.577 28 C 0.060 3.940 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.268 0.732 35 H 0.408 0.592 36 H 0.423 0.577 37 H 0.128 0.872 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.171 0.829 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.416 12.150 -13.278 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.033 0.967 5 C -0.594 4.594 6 H 0.086 0.914 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.192 1.192 13 N -0.319 5.319 14 C 0.277 3.723 15 O -0.426 6.426 16 C 0.295 3.705 17 O -0.393 6.393 18 N -0.281 5.281 19 C 0.015 3.985 20 C -0.142 4.142 21 C -0.152 4.152 22 C -0.102 4.102 23 C -0.118 4.118 24 C -0.245 4.245 25 C -0.063 4.063 26 N -0.196 5.196 27 H 0.261 0.739 28 C -0.049 4.049 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.244 0.756 36 H 0.261 0.739 37 H 0.146 0.854 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.188 0.812 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -14.355 12.008 -12.884 22.722 hybrid contribution 1.075 -0.487 0.982 1.535 sum -13.281 11.521 -11.902 21.231 Atomic orbital electron populations 1.21709 0.96560 0.99719 1.00375 1.21823 0.94149 0.98519 1.01735 1.18637 0.94067 0.89586 0.80227 0.96692 1.21496 0.91254 1.39681 1.06979 0.91427 1.25676 1.03192 0.94114 0.94852 1.70003 1.37092 1.37896 1.09733 0.85456 0.79180 0.78449 0.77634 1.19801 1.20784 1.19187 1.46243 1.14330 1.52914 1.18401 1.19962 0.83760 0.80771 0.87855 1.90721 1.51517 1.59918 1.40455 1.20334 0.82265 0.79633 0.88235 1.90725 1.51627 1.57050 1.39879 1.42911 1.14697 1.51328 1.19121 1.16930 1.02086 0.92992 0.86470 1.21108 1.01148 1.01288 0.90644 1.20791 0.99847 0.96463 0.98137 1.20636 0.96501 0.96341 0.96733 1.19545 1.02087 0.97905 0.92235 1.22031 1.06022 1.01331 0.95098 1.22539 0.97322 0.90858 0.95554 1.41911 1.43505 1.25494 1.08678 0.73857 1.18106 1.01475 0.95202 0.90126 0.94523 0.94179 0.93184 0.94149 0.90246 0.92321 0.75627 0.73857 0.85448 0.83504 0.83193 0.81184 0.77253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.51 71.98 0.61 -4.74 16 2 C -0.12 -5.89 5.45 30.60 0.17 -5.72 16 3 C 0.28 13.88 2.24 44.25 0.10 13.98 16 4 H 0.02 0.87 7.58 -2.39 -0.02 0.86 16 5 C -0.56 -29.29 8.73 25.60 0.22 -29.07 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -50.40 11.29 21.45 0.24 -50.16 16 9 Si 0.97 41.77 29.54 68.60 2.03 43.79 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 N -0.67 -28.57 5.01 -447.56 -2.24 -30.82 16 14 C 0.50 19.60 6.45 87.23 0.56 20.17 16 15 O -0.55 -23.14 13.62 -3.30 -0.04 -23.18 16 16 C 0.51 17.60 7.73 87.23 0.67 18.28 16 17 O -0.52 -19.11 13.89 -3.37 -0.05 -19.15 16 18 N -0.63 -17.94 5.33 -304.54 -1.62 -19.57 16 19 C 0.11 3.03 6.32 38.29 0.24 3.27 16 20 C -0.12 -3.31 8.69 22.44 0.19 -3.12 16 21 C -0.13 -2.90 9.96 22.01 0.22 -2.68 16 22 C -0.08 -1.64 10.05 22.26 0.22 -1.42 16 23 C -0.11 -2.42 6.37 -20.21 -0.13 -2.55 16 24 C -0.22 -3.43 11.08 23.51 0.26 -3.17 16 25 C 0.06 0.82 11.82 83.01 0.98 1.80 16 26 N -0.59 -10.24 6.07 -187.26 -1.14 -11.38 16 27 H 0.42 5.82 8.96 -92.71 -0.83 4.99 16 28 C 0.06 1.42 7.20 39.13 0.28 1.70 16 29 H 0.04 1.64 7.85 -2.38 -0.02 1.62 16 30 H 0.04 1.63 5.64 -2.39 -0.01 1.62 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.08 4.21 5.95 -2.38 -0.01 4.20 16 34 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.41 16.37 8.01 -92.71 -0.74 15.62 16 36 H 0.42 10.53 8.30 -92.71 -0.77 9.77 16 37 H 0.13 3.85 6.17 -2.91 -0.02 3.83 16 38 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 39 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 41 H 0.21 0.88 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -65.79 345.00 1.00 -64.79 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: -1.23 Total: 37.31 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 5.06 Total: 8.37 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.76 Total: -111.92 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.09 Total: -42.34 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -65.79 1.00 -64.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525887895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.678 kcal (2) G-P(sol) polarization free energy of solvation -65.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds