Wall clock time and date at job start Tue Mar 31 2020 12:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47122 * 2 1 4 4 N 1.46500 * 109.47347 * 120.00307 * 2 1 3 5 5 C 1.46506 * 119.99621 * 304.45339 * 4 2 1 6 6 C 1.50702 * 109.46806 * 263.58664 * 5 4 2 7 7 H 1.08001 * 119.99808 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00200 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99910 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00354 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47350 * 89.99753 * 10 8 6 12 12 H 1.48496 * 109.47343 * 210.00003 * 10 8 6 13 13 H 1.48507 * 109.46928 * 329.99804 * 10 8 6 14 14 C 1.34776 * 120.00351 * 124.44655 * 4 2 1 15 15 O 1.21355 * 119.99808 * 354.62569 * 14 4 2 16 16 C 1.49351 * 119.99992 * 174.61645 * 14 4 2 17 17 O 1.21369 * 119.99987 * 0.63086 * 16 14 4 18 18 N 1.34778 * 119.99919 * 180.63095 * 16 14 4 19 19 C 1.39360 * 119.99854 * 184.84317 * 18 16 14 20 20 C 1.39157 * 119.92764 * 324.41692 * 19 18 16 21 21 C 1.37678 * 120.07940 * 180.02562 * 20 19 18 22 22 C 1.39787 * 119.92469 * 359.97438 * 21 20 19 23 23 C 1.43194 * 120.07412 * 179.97438 * 22 21 20 24 24 N 9.85323 * 150.81394 * 202.32319 * 4 1 2 25 25 C 1.39776 * 119.84525 * 0.27708 * 22 21 20 26 26 C 1.37687 * 119.92708 * 359.45991 * 25 22 21 27 27 H 1.09000 * 109.46671 * 300.00005 * 1 2 3 28 28 H 1.09003 * 109.47073 * 59.99976 * 1 2 3 29 29 H 1.09001 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46850 * 239.99483 * 2 1 3 31 31 H 1.09002 * 109.46884 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47166 * 299.99967 * 3 2 1 33 33 H 1.08991 * 109.47435 * 60.00340 * 3 2 1 34 34 H 1.09000 * 109.47092 * 23.58592 * 5 4 2 35 35 H 1.08996 * 109.47172 * 143.59288 * 5 4 2 36 36 H 0.96994 * 120.00218 * 179.97438 * 9 8 6 37 37 H 0.96993 * 119.99907 * 4.84035 * 18 16 14 38 38 H 1.08005 * 119.95774 * 0.02562 * 20 19 18 39 39 H 1.07997 * 120.04272 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.03768 * 179.69669 * 25 22 21 41 41 H 1.08003 * 119.96215 * 180.23148 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5858 -0.2496 2.5245 6 6 2.6233 0.6735 3.1098 7 1 3.5155 0.9084 2.5482 8 6 2.4337 1.2181 4.3621 9 7 1.3471 0.9324 5.0458 10 14 3.7194 2.3629 5.0873 11 1 3.4082 3.7633 4.7037 12 1 3.7117 2.2417 6.5673 13 1 5.0606 1.9936 4.5675 14 6 2.8655 -1.7319 1.0745 15 8 3.1473 -2.1595 -0.0257 16 6 3.4576 -2.3592 2.2937 17 8 3.1670 -1.9388 3.3945 18 7 4.3146 -3.3922 2.1714 19 6 4.7885 -4.0427 3.3091 20 6 5.0384 -3.3175 4.4702 21 6 5.5072 -3.9569 5.5957 22 6 5.7316 -5.3364 5.5716 23 6 6.2197 -6.0046 6.7403 24 7 6.6075 -6.5346 7.6672 25 6 5.4846 -6.0610 4.4021 26 6 5.0107 -5.4161 3.2817 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 0.6358 0.2782 2.4406 35 1 1.4637 -1.1168 3.1734 36 1 1.2138 1.3153 5.9270 37 1 4.6014 -3.6829 1.2917 38 1 4.8644 -2.2517 4.4883 39 1 5.7013 -3.3933 6.4964 40 1 5.6616 -7.1261 4.3785 41 1 4.8160 -5.9761 2.3789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527353814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:48 Heat of formation + Delta-G solvation = 3.482564 kcal Electronic energy + Delta-G solvation = -26025.901887 eV Core-core repulsion = 22292.904317 eV Total energy + Delta-G solvation = -3732.997570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.77194 -39.42935 -38.01737 -36.50696 -36.18070 -34.52117 -32.86403 -31.36017 -31.13405 -30.13345 -27.28959 -26.78181 -25.33379 -23.14779 -23.06787 -22.80126 -20.54569 -19.00967 -18.95634 -17.74264 -16.97591 -16.61573 -16.30680 -15.57952 -15.08524 -14.79962 -14.52293 -14.38424 -14.05567 -13.88316 -13.74618 -13.58569 -13.42970 -13.22588 -12.81959 -12.57683 -12.38614 -12.33232 -12.20577 -11.84190 -11.74011 -11.56353 -11.26094 -11.08732 -10.91464 -10.86267 -10.62834 -10.29529 -10.17659 -10.00039 -9.65631 -9.14402 -8.77697 -8.35454 -8.17870 -7.90841 -6.07651 -4.09194 0.65848 1.30026 1.97841 2.62607 2.69340 2.95073 3.25867 3.33979 3.35817 3.70555 3.86576 3.90340 3.97725 4.40033 4.74578 4.79133 4.89989 5.17747 5.28717 5.34024 5.39775 5.50968 5.53421 5.68929 5.85903 5.98525 5.98958 6.03535 6.22415 6.23454 6.30244 6.30701 6.40273 6.57670 6.67770 6.86707 6.88995 7.22742 7.34804 7.43772 7.44611 7.81180 8.02456 8.13506 8.22855 8.56487 8.90490 9.52946 11.01189 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.004496 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.781621 B = 6226.163724 C = 7969.801516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 C -0.155 4.155 4 N -0.552 5.552 5 C 0.227 3.773 6 C -0.510 4.510 7 H 0.054 0.946 8 C 0.070 3.930 9 N -0.889 5.889 10 Si 0.889 3.111 11 H -0.282 1.282 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.508 3.492 15 O -0.563 6.563 16 C 0.488 3.512 17 O -0.422 6.422 18 N -0.664 5.664 19 C 0.191 3.809 20 C -0.124 4.124 21 C -0.045 4.045 22 C -0.061 4.061 23 C 0.264 3.736 24 N -0.434 5.434 25 C -0.050 4.050 26 C -0.152 4.152 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.262 0.738 37 H 0.419 0.581 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.665 -7.874 -7.390 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.283 5.283 5 C 0.108 3.892 6 C -0.549 4.549 7 H 0.072 0.928 8 C -0.132 4.132 9 N -0.528 5.528 10 Si 0.717 3.283 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.290 3.710 15 O -0.445 6.445 16 C 0.270 3.730 17 O -0.288 6.288 18 N -0.312 5.312 19 C 0.094 3.906 20 C -0.145 4.145 21 C -0.067 4.067 22 C -0.066 4.066 23 C -0.050 4.050 24 N -0.109 5.109 25 C -0.071 4.071 26 C -0.173 4.173 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.257 0.743 38 H 0.175 0.825 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.977 -8.443 -5.556 10.862 hybrid contribution 0.658 0.824 -0.179 1.070 sum 4.636 -7.619 -5.735 10.603 Atomic orbital electron populations 1.22133 0.94983 1.02010 1.02611 1.21048 0.94129 0.93596 0.88306 1.22089 1.01378 0.95415 1.02391 1.48388 1.41361 1.27988 1.10525 1.19946 0.95974 0.97384 0.75898 1.21166 1.05339 1.26893 1.01481 0.92773 1.24778 0.95374 0.96505 0.96551 1.69905 1.26090 1.44098 1.12704 0.86651 0.82110 0.81063 0.78470 1.20799 1.21187 1.20038 1.19665 0.81112 0.82028 0.88169 1.90650 1.62650 1.63927 1.27240 1.20516 0.80609 0.80707 0.91198 1.91002 1.54972 1.56322 1.26551 1.43270 1.45658 1.33354 1.08895 1.18006 0.93724 0.90988 0.87846 1.21460 0.98849 1.02433 0.91724 1.21096 0.94994 0.91912 0.98652 1.16007 1.08247 0.93151 0.89188 1.25742 0.93100 0.93255 0.92940 1.81230 1.10237 1.08823 1.10659 1.20844 0.96063 0.99613 0.90620 1.20827 1.04686 0.92092 0.99699 0.91185 0.91931 0.92767 0.89259 0.92778 0.92752 0.90336 0.94523 0.91877 0.92833 0.74339 0.82528 0.84701 0.84873 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.10 37.16 0.34 -1.99 16 2 C 0.13 2.21 3.25 -67.93 -0.22 1.99 16 3 C -0.15 -2.49 8.91 37.16 0.33 -2.16 16 4 N -0.55 -10.83 2.38 -168.01 -0.40 -11.23 16 5 C 0.23 5.18 4.12 -5.19 -0.02 5.16 16 6 C -0.51 -12.73 6.82 -34.44 -0.23 -12.97 16 7 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 8 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -24.41 13.29 55.43 0.74 -23.68 16 10 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.51 9.68 7.67 -11.63 -0.09 9.59 16 15 O -0.56 -10.71 15.82 5.49 0.09 -10.62 16 16 C 0.49 8.82 7.56 -11.63 -0.09 8.74 16 17 O -0.42 -8.94 9.56 5.48 0.05 -8.88 16 18 N -0.66 -9.23 5.30 -10.28 -0.05 -9.28 16 19 C 0.19 2.46 6.29 -83.76 -0.53 1.94 16 20 C -0.12 -1.76 8.67 -39.45 -0.34 -2.10 16 21 C -0.05 -0.55 9.75 -39.21 -0.38 -0.94 16 22 C -0.06 -0.69 5.74 -106.82 -0.61 -1.30 16 23 C 0.26 3.30 15.33 -22.48 -0.34 2.96 16 24 N -0.43 -6.30 18.54 41.84 0.78 -5.53 16 25 C -0.05 -0.47 9.75 -39.21 -0.38 -0.85 16 26 C -0.15 -1.50 9.95 -39.44 -0.39 -1.89 16 27 H 0.07 1.12 6.51 -51.93 -0.34 0.78 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.43 7.27 -51.93 -0.38 1.05 16 34 H 0.04 0.87 6.21 -51.93 -0.32 0.55 16 35 H 0.06 1.59 5.84 -51.93 -0.30 1.29 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.42 4.88 8.30 -40.82 -0.34 4.54 16 38 H 0.16 2.65 6.23 -52.48 -0.33 2.33 16 39 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -29.47 354.20 -6.42 -35.89 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.87 Total: 4.60 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -3.06 Total: 7.91 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 1.06 Total: -49.71 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.14 Total: -19.51 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.47 -6.42 -35.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527353814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.370 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds