Wall clock time and date at job start Tue Mar 31 2020 12:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47122 * 2 1 4 4 N 1.46500 * 109.47347 * 120.00307 * 2 1 3 5 5 C 1.46506 * 119.99621 * 304.45339 * 4 2 1 6 6 C 1.50702 * 109.46806 * 263.58664 * 5 4 2 7 7 H 1.08001 * 119.99808 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00200 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99910 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00354 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47350 * 89.99753 * 10 8 6 12 12 H 1.48496 * 109.47343 * 210.00003 * 10 8 6 13 13 H 1.48507 * 109.46928 * 329.99804 * 10 8 6 14 14 C 1.34776 * 120.00351 * 124.44655 * 4 2 1 15 15 O 1.21355 * 119.99808 * 354.62569 * 14 4 2 16 16 C 1.49351 * 119.99992 * 174.61645 * 14 4 2 17 17 O 1.21369 * 119.99987 * 0.63086 * 16 14 4 18 18 N 1.34778 * 119.99919 * 180.63095 * 16 14 4 19 19 C 1.39360 * 119.99854 * 184.84317 * 18 16 14 20 20 C 1.39157 * 119.92764 * 324.41692 * 19 18 16 21 21 C 1.37678 * 120.07940 * 180.02562 * 20 19 18 22 22 C 1.39787 * 119.92469 * 359.97438 * 21 20 19 23 23 C 1.43194 * 120.07412 * 179.97438 * 22 21 20 24 24 N 9.85323 * 150.81394 * 202.32319 * 4 1 2 25 25 C 1.39776 * 119.84525 * 0.27708 * 22 21 20 26 26 C 1.37687 * 119.92708 * 359.45991 * 25 22 21 27 27 H 1.09000 * 109.46671 * 300.00005 * 1 2 3 28 28 H 1.09003 * 109.47073 * 59.99976 * 1 2 3 29 29 H 1.09001 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46850 * 239.99483 * 2 1 3 31 31 H 1.09002 * 109.46884 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47166 * 299.99967 * 3 2 1 33 33 H 1.08991 * 109.47435 * 60.00340 * 3 2 1 34 34 H 1.09000 * 109.47092 * 23.58592 * 5 4 2 35 35 H 1.08996 * 109.47172 * 143.59288 * 5 4 2 36 36 H 0.96994 * 120.00218 * 179.97438 * 9 8 6 37 37 H 0.96993 * 119.99907 * 4.84035 * 18 16 14 38 38 H 1.08005 * 119.95774 * 0.02562 * 20 19 18 39 39 H 1.07997 * 120.04272 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.03768 * 179.69669 * 25 22 21 41 41 H 1.08003 * 119.96215 * 180.23148 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5858 -0.2496 2.5245 6 6 2.6233 0.6735 3.1098 7 1 3.5155 0.9084 2.5482 8 6 2.4337 1.2181 4.3621 9 7 1.3471 0.9324 5.0458 10 14 3.7194 2.3629 5.0873 11 1 3.4082 3.7633 4.7037 12 1 3.7117 2.2417 6.5673 13 1 5.0606 1.9936 4.5675 14 6 2.8655 -1.7319 1.0745 15 8 3.1473 -2.1595 -0.0257 16 6 3.4576 -2.3592 2.2937 17 8 3.1670 -1.9388 3.3945 18 7 4.3146 -3.3922 2.1714 19 6 4.7885 -4.0427 3.3091 20 6 5.0384 -3.3175 4.4702 21 6 5.5072 -3.9569 5.5957 22 6 5.7316 -5.3364 5.5716 23 6 6.2197 -6.0046 6.7403 24 7 6.6075 -6.5346 7.6672 25 6 5.4846 -6.0610 4.4021 26 6 5.0107 -5.4161 3.2817 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 0.6358 0.2782 2.4406 35 1 1.4637 -1.1168 3.1734 36 1 1.2138 1.3153 5.9270 37 1 4.6014 -3.6829 1.2917 38 1 4.8644 -2.2517 4.4883 39 1 5.7013 -3.3933 6.4964 40 1 5.6616 -7.1261 4.3785 41 1 4.8160 -5.9761 2.3789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527353814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:48 Heat of formation + Delta-G solvation = -13.644335 kcal Electronic energy + Delta-G solvation = -26026.644565 eV Core-core repulsion = 22292.904317 eV Total energy + Delta-G solvation = -3733.740248 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.09964 -40.64438 -39.30773 -37.83054 -37.47173 -35.72492 -34.75338 -32.87339 -32.08017 -31.20155 -29.15127 -28.03761 -26.64209 -24.93131 -24.17607 -23.89338 -21.82018 -20.37635 -19.93792 -19.09174 -18.53331 -18.30576 -17.72208 -16.85498 -16.68644 -16.16265 -15.97225 -15.57180 -15.17729 -15.12965 -14.95650 -14.73861 -14.60951 -14.44536 -14.24627 -13.93217 -13.79414 -13.58069 -13.40142 -13.27969 -13.11699 -12.94537 -12.76837 -12.64957 -12.36504 -12.24380 -12.19456 -11.88280 -11.63637 -11.46799 -11.33394 -10.57852 -10.15778 -9.94857 -9.58300 -9.21184 -8.08183 -6.13787 -0.35329 0.40201 0.55505 1.39909 1.40630 1.43689 1.50537 1.61567 1.90140 2.30221 2.44185 2.64119 2.89048 2.91069 3.26665 3.43407 3.90520 3.95379 4.03659 4.25018 4.25520 4.41539 4.45692 4.54707 4.66135 4.84430 4.93464 4.94530 5.00644 5.09102 5.15761 5.21757 5.27520 5.35076 5.37214 5.49150 5.51225 5.63706 5.83161 5.87978 6.14643 6.20216 6.39591 6.44754 6.82604 6.90265 7.12838 7.50996 9.00103 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.004496 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.781621 B = 6226.163724 C = 7969.801516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 C -0.148 4.148 4 N -0.560 5.560 5 C 0.248 3.752 6 C -0.501 4.501 7 H 0.045 0.955 8 C 0.025 3.975 9 N -0.922 5.922 10 Si 0.941 3.059 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.275 1.275 14 C 0.504 3.496 15 O -0.561 6.561 16 C 0.488 3.512 17 O -0.462 6.462 18 N -0.645 5.645 19 C 0.173 3.827 20 C -0.145 4.145 21 C -0.049 4.049 22 C -0.058 4.058 23 C 0.286 3.714 24 N -0.469 5.469 25 C -0.033 4.033 26 C -0.132 4.132 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.025 0.975 35 H 0.040 0.960 36 H 0.260 0.740 37 H 0.431 0.569 38 H 0.121 0.879 39 H 0.137 0.863 40 H 0.170 0.830 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -9.384 -9.111 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.022 3.978 3 C -0.205 4.205 4 N -0.290 5.290 5 C 0.128 3.872 6 C -0.539 4.539 7 H 0.063 0.937 8 C -0.174 4.174 9 N -0.562 5.562 10 Si 0.768 3.232 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.200 1.200 14 C 0.287 3.713 15 O -0.442 6.442 16 C 0.269 3.731 17 O -0.332 6.332 18 N -0.293 5.293 19 C 0.077 3.923 20 C -0.165 4.165 21 C -0.070 4.070 22 C -0.063 4.063 23 C -0.028 4.028 24 N -0.145 5.145 25 C -0.054 4.054 26 C -0.152 4.152 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.271 0.729 38 H 0.139 0.861 39 H 0.155 0.845 40 H 0.188 0.812 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.759 -9.980 -7.322 13.261 hybrid contribution 0.478 1.196 0.278 1.318 sum 5.237 -8.783 -7.044 12.417 Atomic orbital electron populations 1.22080 0.93318 1.02292 1.03273 1.21336 0.95545 0.93633 0.87259 1.22025 1.00515 0.95158 1.02839 1.48387 1.41853 1.28573 1.10229 1.19417 0.94864 0.95747 0.77149 1.21289 1.05035 1.26415 1.01209 0.93668 1.25397 0.96859 0.97991 0.97125 1.70006 1.27692 1.45569 1.12979 0.85829 0.80120 0.79767 0.77533 1.19975 1.21398 1.19961 1.19898 0.80888 0.81897 0.88634 1.90634 1.62563 1.63834 1.27214 1.20460 0.80983 0.81342 0.90276 1.91005 1.56736 1.57936 1.27515 1.43044 1.44268 1.31998 1.10039 1.18215 0.94838 0.92314 0.86975 1.21208 1.00888 1.01116 0.93334 1.21067 0.95027 0.92662 0.98211 1.16040 1.08162 0.92540 0.89539 1.25781 0.92139 0.92379 0.92541 1.81260 1.11514 1.10125 1.11585 1.21243 0.93781 1.01171 0.89171 1.21139 1.02573 0.90416 1.01099 0.93088 0.88601 0.92687 0.88414 0.94001 0.89164 0.92937 0.95684 0.94217 0.93051 0.72874 0.86065 0.84467 0.81211 0.81010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 9.10 71.98 0.66 -3.61 16 2 C 0.12 4.05 3.25 44.99 0.15 4.19 16 3 C -0.15 -4.63 8.91 71.98 0.64 -3.99 16 4 N -0.56 -22.20 2.38 -803.82 -1.91 -24.11 16 5 C 0.25 11.76 4.12 85.63 0.35 12.11 16 6 C -0.50 -25.77 6.82 25.60 0.17 -25.59 16 7 H 0.05 2.36 7.81 -2.91 -0.02 2.34 16 8 C 0.03 1.36 5.46 84.65 0.46 1.82 16 9 N -0.92 -52.25 13.29 21.45 0.28 -51.96 16 10 Si 0.94 43.02 29.54 68.60 2.03 45.04 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 14 C 0.50 19.20 7.67 87.24 0.67 19.87 16 15 O -0.56 -20.66 15.82 -3.26 -0.05 -20.71 16 16 C 0.49 17.90 7.56 87.24 0.66 18.56 16 17 O -0.46 -20.45 9.56 -3.31 -0.03 -20.48 16 18 N -0.64 -17.37 5.30 -304.78 -1.61 -18.98 16 19 C 0.17 4.24 6.29 38.38 0.24 4.48 16 20 C -0.15 -4.19 8.67 22.36 0.19 -4.00 16 21 C -0.05 -1.17 9.75 22.51 0.22 -0.95 16 22 C -0.06 -1.18 5.74 -21.29 -0.12 -1.31 16 23 C 0.29 6.64 15.33 88.33 1.35 7.99 16 24 N -0.47 -13.05 18.54 19.00 0.35 -12.69 16 25 C -0.03 -0.49 9.75 22.51 0.22 -0.27 16 26 C -0.13 -2.12 9.95 22.36 0.22 -1.90 16 27 H 0.05 1.63 6.51 -2.39 -0.02 1.61 16 28 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 3.05 6.91 -2.39 -0.02 3.03 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 1.92 7.27 -2.39 -0.02 1.90 16 34 H 0.03 1.25 6.21 -2.39 -0.01 1.23 16 35 H 0.04 2.10 5.84 -2.39 -0.01 2.09 16 36 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.43 9.24 8.30 -92.71 -0.77 8.47 16 38 H 0.12 4.42 6.23 -2.91 -0.02 4.40 16 39 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 40 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -65.96 354.20 5.46 -60.50 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.31 Total: 16.00 kcal Atomic # 6 Polarization: 21.31 SS G_CDS: 6.09 Total: 27.40 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -2.89 Total: -107.75 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -0.08 Total: -41.19 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -65.96 5.46 -60.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527353814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.858 kcal (2) G-P(sol) polarization free energy of solvation -65.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds